KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:02 2014 Check: 00 .. Name: ENSP00000218099/1-461 Len: 523 Check: 9943 Weight: 1.00 Name: ENSBTAP00000005227/1-462 Len: 523 Check: 9586 Weight: 1.00 Name: bmy_07994T0/1-480 Len: 523 Check: 9402 Weight: 1.00 Name: ENSTTRP00000003185/1-407 Len: 523 Check: 1795 Weight: 1.00 Name: BACU006455/1-136 Len: 523 Check: 4546 Weight: 1.00 // 1 50 ENSP00000218099/1-461 MQRVNMIMAE SPGLITICLL GYLLSAECTV FLDHENANKI LNRPKRYNSG ENSBTAP00000005227/1-462 MWCLNMIMAE SPGLVTICLL GYLLSAECTV FLDRENATKI LHRPKRYNSG bmy_07994T0/1-480 MRCLNMIMAE SPGLVTICLL GYLLSAECTV FLDRENATKI LNRPKRYNSG ENSTTRP00000003185/1-407 ---------- ---------- ---------- FLDRENATKI LNRPKRYNSG BACU006455/1-136 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000218099/1-461 KLEEFVQGNL ERECMEEKCS FEEAREVFEN TERTTEFWKQ YVDGDQCESN ENSBTAP00000005227/1-462 KLEEFVRGNL ERECKEEKCS FEEAREVFEN TEKTTEFWKQ YVDGDQCESN bmy_07994T0/1-480 KLEEFVRGNL ERECIEEKCS FEEAREVFEN TEKTTEFWKQ YVDGDQCESN ENSTTRP00000003185/1-407 KLEEFVRGNL ERECIEEKCS FEEAREVFEN TEKTTEFWKQ YVDGDQCESN BACU006455/1-136 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000218099/1-461 PCLNGGSCKD DINSYECWCP FGFEGKNCEL DVTCNIKNGR CEQFCKNSAD ENSBTAP00000005227/1-462 PCLNGGMCKD DINSYECWCQ AGFEGTNCEL DATCSIKNGR CKQFCKRDTD bmy_07994T0/1-480 PCLNGGLCKD DINSYECWCQ VGFEGKNCEL ---------- ---------- ENSTTRP00000003185/1-407 PCLNGGLCKD DINSYECWCQ VGFEGKNCEL DATCSIKNGR CKQFCKKGAD BACU006455/1-136 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000218099/1-461 NKVVCSCTEG YRLAENQKSC EPAVPFPCGR VSVSQTS-KL TRAETVFPDV ENSBTAP00000005227/1-462 NKVVCSCTDG YRLAEDQKSC EPAVPFPCGR VSVSHISKKL TRAETIFSNT bmy_07994T0/1-480 ---------- ---------- ---VPFPCGR VSVSNTRMKF TRAETIFSNM ENSTTRP00000003185/1-407 NKVVCSCTAG YRLAEDQKSC EPAVPFPCGR VSVSNTRMKF TRAETIFSNM BACU006455/1-136 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000218099/1-461 DYVNSTEAET ILDNITQSTQ SFNDFTRVVG GEDAKPGQFP WQ-------- ENSBTAP00000005227/1-462 NYENSSEAEI IWDNVTQSNQ SFDEFSRVVG GEDAERGQFP WQ-------- bmy_07994T0/1-480 DYENSTEAEI ILENITQSNQ SSNDVTRIVG GEDAIRGQFP WQGFRLRFLA ENSTTRP00000003185/1-407 DYENSTEAEI IFDNIIQSNQ SSNDVTRIVG GEDAIRGQFP WQ-------- BACU006455/1-136 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000218099/1-461 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005227/1-462 ---------- ---------- ---------- ---------- ---------- bmy_07994T0/1-480 RGKAAAAAAA AAAAAAAAAA AAAAATAAPA QPQTLPRSPC ASGRLDPRPP ENSTTRP00000003185/1-407 ---------- ---------- ---------- ---------- ---------- BACU006455/1-136 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000218099/1-461 ---VVLNGKV DAFCGGSIVN EKWIVTAAHC VETGVKITVV AGEHNIEETE ENSBTAP00000005227/1-462 ---VLLHGEI AAFCGGSIVN EKWVVTAAHC IKPGVKITVV AGEHNTEKPE bmy_07994T0/1-480 RPKVLLSDEI DGFCGGSIVN EKWVVTAAHC IKPGVKITVV AGEHNTEETE ENSTTRP00000003185/1-407 ---VLLSDEI DGFCGGSIIN EKWVVTAAHC LKPGVKITVV AGEHNTEETE BACU006455/1-136 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000218099/1-461 HTEQKRNVIR IIPHHNYNAA INKYNHDIAL LELDEPLVLN SYVTPICIAD ENSBTAP00000005227/1-462 PTEQKRNVIR AIPYHSYNAS INKYSHDIAL LELDEPLELN SYVTPICIAD bmy_07994T0/1-480 PTEQKRNVIR AIPYHSYNAS VNKYSHDIAL LELDEPLMLN SYVTPICLAD ENSTTRP00000003185/1-407 PTEQKRNVIR AIPHHSYNAS VNKYSHDIAL LELDEPLMLN SYVTPICIAD BACU006455/1-136 ---------- ---------- ---------- -------MLN SYITPICIAD 401 450 ENSP00000218099/1-461 KEYTNIFLKF GSGYVSGWGR VFHKGRSALV LQYLRVPLVD RATCLRSTKF ENSBTAP00000005227/1-462 RDYTNIFLKF GYGYVSGWGK VFNRGRSASI LQYLKVPLVD RATCLRSTKF bmy_07994T0/1-480 REYTNIFLKF GYGYVSGWGR VFNRGRSASI LQYLKVPLVD RATCLRSTKF ENSTTRP00000003185/1-407 REYTNIFLKF GYGYVSGWGR VFNRGRSASI LQYLKVPLVD RATCLRSTKF BACU006455/1-136 REYTNIFLKF GYGYVSGWGR VFNRGRSASI LQYLKVPLVD RATCLRSTKF 451 500 ENSP00000218099/1-461 TIYNNMFCAG FHEGGRDSCQ GDSGGPHVTE VEGTSFLTGI ISWGEECAMK ENSBTAP00000005227/1-462 SIYSHMFCAG YHEGGKDSCQ GDSGGPHVTE VEGTSFLTGI ISWGEECAMK bmy_07994T0/1-480 TIYNHMFCAG FHEGGKDSCQ GDSGGPHVTE VEGTSFLTGI ISWGEECAVK ENSTTRP00000003185/1-407 TIYNHMFCAG FHEGGKDSCQ GDSGGPHVTE VEGTSFLTGI ISWGEECA-- BACU006455/1-136 TIYNHMFCAG FHEGGKDSCQ GDSGGPHVTE VEGTSFLTGI ISWGEECAVK 501 550 ENSP00000218099/1-461 GKYGIYTKVS RYVNWIKEKT KLT ENSBTAP00000005227/1-462 GKYGIYTKVS RYVNWIKEKT KLT bmy_07994T0/1-480 GKYGIYTKVS RYVNWIKEKT KLT ENSTTRP00000003185/1-407 ---------- ---------- --- BACU006455/1-136 GKYGIYTKVS RYVNWIKEKT KFT