KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:03 2014 Check: 00 .. Name: ENSP00000430276/1-1001 Len: 1119 Check: 1618 Weight: 1.00 Name: ENSBTAP00000005233/1-1000 Len: 1119 Check: 1563 Weight: 1.00 Name: ENSTTRP00000003188/1-1063 Len: 1119 Check: 8960 Weight: 1.00 Name: BACU006454/1-784 Len: 1119 Check: 8833 Weight: 1.00 Name: bmy_07996T0/1-945 Len: 1119 Check: 9882 Weight: 1.00 // 1 50 ENSP00000430276/1-1001 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005233/1-1000 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003188/1-1063 APRTPAPQSP APGGRTPGLP WDPDSCAFVP ATQAISLQVD MAMALQRVRI BACU006454/1-784 ---------- ---------- ---------- ---------- ---------- bmy_07996T0/1-945 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000430276/1-1001 ---------- ---------- ---------- ---MQDIAFL SGGRGKDNAW ENSBTAP00000005233/1-1000 ---------- ---------- ---------- ---MQDIAFL SGGRGKDDAW ENSTTRP00000003188/1-1063 SDKYGKSYLC LLQAVFLAET EVLLRVKDIS HFLMQDIAFL SGGRGKDNAW BACU006454/1-784 ---------- ---------- ---------- ------FYTI LGGRGKDNAW bmy_07996T0/1-945 ---------- ---------- ---------- ------MAEA TPPRGK---- 101 150 ENSP00000430276/1-1001 IITFPENCNF RCIPEEVIAK VLTYLTSIAR QNGSDSRFTI ILDRRLDTWS ENSBTAP00000005233/1-1000 IITFPENCNF KCIPEEVIAK VLTYLTSVAR QNGSDSRFTI ILDRRLDTWS ENSTTRP00000003188/1-1063 IITFPENCNF RCIPEEVIAK VLTYLTSVAR QNESDSRFTI ILDRRLDTWS BACU006454/1-784 IITFPENCNF RCIPEEVIAK VLTYLTSVAR QNGSDSRFTI ILDRRLDTWS bmy_07996T0/1-945 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000430276/1-1001 SLKISLQKIS ASFPGNLHLV LVLRPTSFLQ RTFTDIGFWF SQEDFMLKLP ENSBTAP00000005233/1-1000 SLKMSLQKIS SSFPGNLHLV LVLRPTSFLQ RTFTDIGFRF SQEDFMLKLP ENSTTRP00000003188/1-1063 SLKISLQKIS ASFPGNLHLV LVLRPTSFLQ RTFTDIGFRF SQEDFILKLP BACU006454/1-784 SLKISLQKIS ASFPGNLHLV LVLRPTSFLQ RTFTDIGFRF SQEDFILKLP bmy_07996T0/1-945 ---MRFRRNA ASFPGNLHLV LVLRPTSFLQ RTFTDIGFRF SQEDFILKLP 201 250 ENSP00000430276/1-1001 VVMLSSVSDL LTYIDDKQLT PELGGTLQYC HSEWIIFRNA IENFALTVKE ENSBTAP00000005233/1-1000 VVMLSSVSDL LTYIDDKQLT TELGGTLQYS HSEWITFRNA IENFALTVKD ENSTTRP00000003188/1-1063 VVMLSSVSDL LTYIDDEQLT PELGGTLQYC HSEWIIFRNA IENFALTVKD BACU006454/1-784 VVMLSSVSDL LTYIDDEQLT PELGGTLQYC HSEWIIFRNA IENFALTVKD bmy_07996T0/1-945 VVMLSSVSDL LTYIDDEQLT PELGGTLQYC HSEWIIFRNA IENFALTVKD 251 300 ENSP00000430276/1-1001 MAQMLQSFGT ELAETELPDD IPSIEEILAI RAER------ -------YHL ENSBTAP00000005233/1-1000 TAQMLQSFGT ELAETELPGD IPAMEEILAI RAER------ -------YHL ENSTTRP00000003188/1-1063 MAQMLQSFGT ELAETELPDD IPAIEEILAT RAER------ -------YHL BACU006454/1-784 MAQMLQSFGT ELAETELPDD FPAIEEILAI RAERSFRVGS QQADSSYFAF bmy_07996T0/1-945 MAQMLQSFGT ELAETELPDD IPAIEEILAI RAER------ -------YHL 301 350 ENSP00000430276/1-1001 LKNDITAVTK EGKILLTNLE VPDTEGAVSS RLECHRQISG DWQTINKLLT ENSBTAP00000005233/1-1000 LKKDITAVTK EGKFLLTNLE VPDAEGAVSS RLENDQPTSG DWQTINKLLT ENSTTRP00000003188/1-1063 LKKDITTVTK EGKILLTNLE VPDAEDAVSS RLENHQQICG DWQTINKLLT BACU006454/1-784 VQKDITAVTK EGKILLTNLE VPDAEGAVSS RLENHQQICG DWQTINKLLT bmy_07996T0/1-945 LKKDITAVTK EGKILLTNLE VPDAEDAVSS RLENHQQICG DWQTINKLLT 351 400 ENSP00000430276/1-1001 QVHDMETAFD GFWEKHQLKM EQYLQLWKFE QDFQQLVTEV EFLLNQQAEL ENSBTAP00000005233/1-1000 QVHDMEIAFD GFWEKHQLKM EQYLQLWKFE QDFQELVSEA ELILNQQAEL ENSTTRP00000003188/1-1063 QVHDMEIAFD GFWEKHQLKM EQYLQLWKFE QDFQELVSEA ELLLNQQAEL BACU006454/1-784 QVHDMEIAFD GFWEKHQLKM EQYLQLWKFE QDFQELVSEA ELLLNQQAEL bmy_07996T0/1-945 QVHDMEIAFD GFWEKHQLKM EQYLQLWKFE QDFQELVSEA ELLLNQQAEL 401 450 ENSP00000430276/1-1001 ADVTGTIAQV KQKIKKLENL DENSQELLSK AQFVILHGHK LAANHHYALD ENSBTAP00000005233/1-1000 ADVTGTIAQV KQKIKKLENL DENSQDLLAK ARFVIIHGHR LAASHHYALD ENSTTRP00000003188/1-1063 ADVTGNIAQV KQKIKKLENL DENSQDLLAK AQFVILHGHR LAASHHYALD BACU006454/1-784 ADVTGNIAQV KQKIKKLENL DENSQDLLAK AQFVILHGHR LAASHHYALD bmy_07996T0/1-945 ADVTGNIAQV KQKIKKLENL DENSQDLLAK AQFVILHGHR LAASHHYALD 451 500 ENSP00000430276/1-1001 LICQRCNELR YLSDILVNEI KAKRIQLSRT FKMHKLLQQA RQCCDEGECL ENSBTAP00000005233/1-1000 LICQRCNELR YLSDILVNEI RTKRIQLNRT FKMHKLLQQA LQCCDEGECL ENSTTRP00000003188/1-1063 LICQRCNELR YLSDILVNEI KTKRIQLSRT FKMHKILQQA HQCCDEGECL BACU006454/1-784 LICQRCNELR YLSDILVNEI KTKRIQLSRT FKMHKILQQA ---------- bmy_07996T0/1-945 LICQRCNELR YLSDILVNEI KTKRIQLSRT FKMHKILQQA RQCCDEGECL 501 550 ENSP00000430276/1-1001 LANQEIDKFQ SKEDAQKALQ DIENFLEMAL PFINYEPETL QYEFDVILSP ENSBTAP00000005233/1-1000 LANQEIDKFQ SKEDAQKALQ DIENFLEMAL PFINYDPETL QYEFGIILSP ENSTTRP00000003188/1-1063 LANQEINKFQ SKKDAQRALQ DMETFLEMAA PFINYDPEAL QYEFDMILSP BACU006454/1-784 ---------- ---------- ---------- ---------- ---------- bmy_07996T0/1-945 LANQEINKFQ SKKDAQKALQ DIENFLEMAL PFINYDPETL QYEFDVILSP 551 600 ENSP00000430276/1-1001 ELKVQMKTIQ LKLENIRSIF ENQQAGFRNL ADKHVRPIQF VVPTPENLVT ENSBTAP00000005233/1-1000 ELKVQMQTIQ LKLENIRSIF ENQQAGFRNL TDKHVRPIPF VVSASDNLVR ENSTTRP00000003188/1-1063 ELKVQMQTIQ LKLENLRSIF ENQQAGFRNL TDKHVRPIPS VVPASDSLIR BACU006454/1-784 ----QMQTIQ LKLENIRSIF ENQQAGFRNL TDKHVRPIPF VVPASDSLIR bmy_07996T0/1-945 ELKAQMQTIQ LKLENIRSIF ENQQAGFRNL TDKHVRPIPF VVPASDSLIR 601 650 ENSP00000430276/1-1001 SGTPFFSSKQ -VGVGYSFFQ ACKLFSKGKK TWRQNQSNLK IEVVPDCQEK ENSBTAP00000005233/1-1000 SGAPFFSPTQ AVGVGYSFFQ ACKLFSKGKK TWRQNQSNTK TEAVYDCQEK ENSTTRP00000003188/1-1063 SREPFFSPEQ ---------- -------GRK TWRQNQSNIK IEVVQDCQEK BACU006454/1-784 SREPFFSPKQ ---------- ---------- ---------- --AVHDCQEK bmy_07996T0/1-945 SREPFFSPKQ -VGVGYSFFQ ACKLFSKGRK TWRQNQSNIK IEAVHDCQEK 651 700 ENSP00000430276/1-1001 RSSGPSSSLD NGNSLDVLKN HVLNELIQTE RVYVRELYTV LLGYRAEMDN ENSBTAP00000005233/1-1000 RSSAQSSNLD NDNSLDILKN HVLNELIQTE RAYVRELFTV LLGYRAEMDN ENSTTRP00000003188/1-1063 RSSAQSSSLD NDNSLDILKN HVLNELVQTE KVYVRELFAV LLGYREEMDN BACU006454/1-784 SSSAQSSSLD NGNSLDVLKN HVLNELVQTE RVYVRELFAV LL-------- bmy_07996T0/1-945 SSSAQSSSLN NGNSLDVLKN HVLNELVQTE RVYVRELFAV LLGYREEMDN 701 750 ENSP00000430276/1-1001 PEMFDLMPPL LRNKKDILFG NMAEIYEFHN DIFLS-SLEN CAHAPERVGP ENSBTAP00000005233/1-1000 PEMFVLMPPL LRSKRDVLFG NMAEIYEFHN KLLFKWLLTN IAYAPERVGS ENSTTRP00000003188/1-1063 PEMFDLIPPL LRNKKDVLFG NMAEIYEFHS NIFMS-SLED CVVAPERVGP BACU006454/1-784 ---------- ---------- ---------- ---------- ---------- bmy_07996T0/1-945 PEMFDLIPPL LRNKKDVLFG NMAEIYEFHN NIFMS-SLEN CVVAPERVGP 751 800 ENSP00000430276/1-1001 CFLERKDDFQ MYAKYCQNKP RSETIWRKYS ECAFFQECQR KLKHRLRLDS ENSBTAP00000005233/1-1000 CFLERKDDFQ MYAKYCQNKP RSEAIWKKYS ECAFFQECQR KLKHRLGLDS ENSTTRP00000003188/1-1063 CFLERKDDFQ MYAKYCQNKP KSEAIWKKYS ECAFFQECQR KLKHRLGLDS BACU006454/1-784 -----KDDFQ MYAKYCQNKP RSEAIWRKYS ECAFFQ---- ---------- bmy_07996T0/1-945 CFLERKDDFQ MYAKYCQNKP RSEAIWRKYS ECAFFQECQR KLKHRLGLDS 801 850 ENSP00000430276/1-1001 YLLKPVQRIT KYQLLLKELL KYSKDCEGSA LLKKALDAML DLLKSVNDSM ENSBTAP00000005233/1-1000 YLLKPVQRIT KYQLLLKELL KYSKDCVGSV ELKEALDTML DLLKSVNDLM ENSTTRP00000003188/1-1063 YLLKPVQRIT KYQLLLKELL KYSKDCEGSV QLKEALDMIL DLLKSVNDSM BACU006454/1-784 ---------- -------ELL KYSKDCEGSV QLKEALDMIL DLLKSVNDSM bmy_07996T0/1-945 YLLKPVQRIT KYQLLLKELL KYSKDCEGSV QLKEALDMIL DLLKSVNDSM 851 900 ENSP00000430276/1-1001 HQIAINGYIG NLNELGKMIM QGGFSVWIGH KKGATKMKDL ARFKPMQRHL ENSBTAP00000005233/1-1000 HQTAINGYIG NLNELGKMIM QGAFSVWIGH KKGTTKMKDF ARFKPMQRHL ENSTTRP00000003188/1-1063 HQIAINGYIG NLNELGKMIT QGAFSVWIGH KKGATKMKDF ARFKPMQRHL BACU006454/1-784 HQIAINGYIG NLNELGKMIT QGAFSVWIGH KKGATKMKDF ARFKPMQRHL bmy_07996T0/1-945 HQIAINGYIG NLNELGKMIT QGAFSVWIGH KKGATKMKDF ARFKPMQRHL 901 950 ENSP00000430276/1-1001 FLYEKAIVFC KRRVESGEGS DRYPSYSFKH CWKMDEVGIT EYVKGDNRKF ENSBTAP00000005233/1-1000 FLYEKAVVFC KRRVESGEGG DRYPSYSFKH CLKMDELGIT EYVKGDNRKF ENSTTRP00000003188/1-1063 FLYEKAIVFC KRRVESREGS DRYPSYSFKH CLKMDEVGIT EYVKGDDRKF BACU006454/1-784 FLYEKAIVFC KRRVESREGS DRYPSYSFKH CLK------- ---------- bmy_07996T0/1-945 FLYEKAIVFC KRRVESREGS DRYPSYSFKH CLKMDEVGIT EYVKGDNRKF 951 1000 ENSP00000430276/1-1001 EIWYGEKEEV YIVQASNVDV KMTWLKEIRN ILLKQQELLT VKKRKQQDQL ENSBTAP00000005233/1-1000 EIWNAGKEEV YIVQASNIDM KMMWLKEIRT ILLKQQELLT VKNREQHNQL ENSTTRP00000003188/1-1063 EIWYAGKEEV YIVQASNVDV KMMWLKEIRS ILLKQQELMT VKKQEQHNQL BACU006454/1-784 ---------- ----ASNVDV KMTWLKEIRS ILLKQQELMT VKKQEQHNQL bmy_07996T0/1-945 EIWYAGKEEV YIVQASNVDV KMTWLKEIR- ---------- IKKQEQHNQL 1001 1050 ENSP00000430276/1-1001 TERDKFQISL QQNDEKQQGA FISTEETELE HTSTVVEVCE AIASVQAEAN ENSBTAP00000005233/1-1000 TEQNHF--SS QQNDEGQHRG FIGAEEPELG HISTMVEVGE SITSVQAEAN ENSTTRP00000003188/1-1063 TEQNL----S SQRNERQQGA FIGAEETDLA HTSTMVEVDE AIASVRAEAN BACU006454/1-784 TEQNL----S SQRNERQQGA FIGAEETDLE HTSAMVEVGE AIASVRAEAN bmy_07996T0/1-945 MEQNL----S SQRNERQQGA FIGAEETDLE HTSAMVEVGE AIASVRAEAN 1051 1100 ENSP00000430276/1-1001 TVWTEASQSA EISEEPAEWS SNYFYPTYDE NEEENRPLMR PV-------- ENSBTAP00000005233/1-1000 TVWTEMSSPA KVSDEPEKWS SNYFYSSYDG HEEE-RPLMK PE-------- ENSTTRP00000003188/1-1063 TVWTEMSSPS EIPVEPEEWP SNYFYSSCDD NEEE-RPLMR PV-------- BACU006454/1-784 TVWTEMSSPA EISGEPEEWS SNYFYSSYDG NEEE-RPLMV SN-------- bmy_07996T0/1-945 TVWTEMSSPA EISDEPEEWS SNYFYSSYDD NEEE-RPLMI TVLKSATDKQ 1101 1150 ENSP00000430276/1-1001 ------SEMA LLY------ ENSBTAP00000005233/1-1000 ------SEMA VLF------ ENSTTRP00000003188/1-1063 ------SEMA VLF------ BACU006454/1-784 ------DILR --------- bmy_07996T0/1-945 HKSQDDPMLP MTFTELPQD