KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:05 2014 Check: 00 .. Name: ENSTTRP00000010612/1-1213 Len: 1304 Check: 3344 Weight: 1.00 Name: ENSP00000384169/1-1231 Len: 1304 Check: 7927 Weight: 1.00 Name: ENSBTAP00000005240/1-1160 Len: 1304 Check: 3363 Weight: 1.00 Name: BACU010001/1-1194 Len: 1304 Check: 5025 Weight: 1.00 Name: bmy_19223T0/1-783 Len: 1304 Check: 537 Weight: 1.00 // 1 50 ENSTTRP00000010612/1-1213 MASLAEPVGA WLAVAVALAL GPSPSTAVPG QDCTGIECPP LENCIEEALE ENSP00000384169/1-1231 MVLLWEPAGA WLALGLALAL GPSVAAAAPR QDCTGVECPP LENCIEEALE ENSBTAP00000005240/1-1160 MARLGEPMGA WLALALALAL SPG-GAAAPG QDCTGVECPP LENCIEDALE BACU010001/1-1194 MAPLGEPVGA WLALALALAL GPGPSTAVPG QDCTGAECPP LENCIEEALE bmy_19223T0/1-783 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000010612/1-1213 PGACCATCMQ QGCACEGYQY YDCLQGGFVR GRVPAGQSYF VDFGSTECSC ENSP00000384169/1-1231 PGACCATCVQ QGCACEGYQY YDCLQGGFVR GRVPAGQSYF VDFGSTECSC ENSBTAP00000005240/1-1160 PGACCATCVQ RGCACEGYQY YDCLQGGFVR GRVPAGQSYF VDFGSTECSC BACU010001/1-1194 PGACCATCVQ QGCACEGYQY YDCLQGGFVR GRVPAGQSYF VDFGSTECSC bmy_19223T0/1-783 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000010612/1-1213 PPGGGKISCQ FMPCPELPPN CIEALVAADS CPQCGQVGCV HSGRKYAAGH ENSP00000384169/1-1231 PPGGGKISCQ FMLCPELPPN CIEAVVVADS CPQCGQVGCV HAGHKYAAGH ENSBTAP00000005240/1-1160 PPGGGKISCQ FMPCPELPPN CIEAVVAADS CPQCGQVGCV HSGRKYAAGH BACU010001/1-1194 PPGGGKISCQ FMPCPELPPN CIEAVVAADS CPQCGQVGCV HSGRKYAAGH bmy_19223T0/1-783 ---------- ----MVLVPN ---------- ---------- ---------- 151 200 ENSTTRP00000010612/1-1213 TVHLSPCRAC HCPDAGGEL- ---------- ---------- --------IC ENSP00000384169/1-1231 TVHLPPCRAC HCPDAGGEL- ---------- ---------- --------IC ENSBTAP00000005240/1-1160 TVRLAPCRAC HCPDAGGEL- ---------- ---------- --------IC BACU010001/1-1194 TIHLSPCRAC HCPDAGGALX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_19223T0/1-783 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000010612/1-1213 YRLPDCHGDA APGNFSDAEE GDPERHYEDP YSYDQEVAEA EAAAALEGEL ENSP00000384169/1-1231 YQLPGCH--- --GNFSDAEE GDPERHYEDP YSYDQEVAEV EAATALGGEV ENSBTAP00000005240/1-1160 YPLPDCHGDA APGNTSDAED GDPERHYEDP YSYDQEVAEA E---ALAGEL BACU010001/1-1194 XXLPDCHGDA APGNFSDAEE GDPERHYEDP YSYDQEVAEA EAAAALEGEL bmy_19223T0/1-783 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000010612/1-1213 QAGA------ GGPAALGAGG QPPSAIQATR WPAALPRPTA AAALGPPAPV ENSP00000384169/1-1231 QAGAVQAGAG GPPAALGGGS QPLSTIQAPP WPAVLPRPTA AAALGPPAPV ENSBTAP00000005240/1-1160 QAGA------ GGPAALGGGG QPPSALQATL WPAALPRPTA AAALGPPAPV BACU010001/1-1194 QAGA------ GGPAALGAGG QPPSALQATR GLAALPRPTA AAALGPPAPV bmy_19223T0/1-783 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000010612/1-1213 QAKARRVTED R------QED REELTVREQP AAGGPRGLDG RPTAGPA-PG ENSP00000384169/1-1231 QAKARRVTED SEEEEEEEEE REEMAVTEQL AAGGHRGLDG LPTTAPAGPS ENSBTAP00000005240/1-1160 QAKARRVTDD G------QED REVPAVQEQL AAGGPRGLDG RPTAGPM-PA BACU010001/1-1194 QAKPRSVTED R------QEE REELTVREQP AAGGPRGLDG RPTAGPA-PG bmy_19223T0/1-783 ---------- -------RQA RKAM------ ---------- ---------- 351 400 ENSTTRP00000010612/1-1213 LPVEEAA--- ----EARARP EENLIPDAQA TPRSAGQEGA AHASTTGQ-- ENSP00000384169/1-1231 LPIQEERAEA GARAEAGARP EENLILDAQA TSRSTGPEGV THAPSLGKAA ENSBTAP00000005240/1-1160 HPVREEG--- ---AEARAGV EENLIPDVQA THRSAGP--- --PPTFSMPN BACU010001/1-1194 LPVQEEA--- ---AEARARP EENLIPDAQA TPHSAWQEGA GPIPASSTAS bmy_19223T0/1-783 LPLAERR--- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000010612/1-1213 VPASQATQSA PEGPAEPH-H AILTTPHQEA ARVPPTQEVP KQPPVVPRSR ENSP00000384169/1-1231 LVPTQAVPGS PRDPVKPSPH NILSTSLPDA AWIPPTREVP RKPQVLPHSH ENSBTAP00000005240/1-1160 ILLTETTQGP PEAPTEPSAH AALTTLQQET ARAPPTQEVP QQPAG-PRSR BACU010001/1-1194 VLPSQATQSA PEGPAEPSTH AILTTPHQEA ARVPPTQEVP KQPPVLPRSR bmy_19223T0/1-783 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000010612/1-1213 PEEDTDPNSV HSVPRGDPEV ---------- ---------- ------STKD ENSP00000384169/1-1231 VEEDTDPNSV HSIPRSSPEG ---------- ---------- ------STKD ENSBTAP00000005240/1-1160 LEEEEDPNSV HSVPRAGLEV ---------- ---------- ------STKD BACU010001/1-1194 PEEDTDPNSV HSVPRADPEG QRRACRGQRD PQTRGLGFPQ PLLLRVSTKD bmy_19223T0/1-783 ---------- --------QM ---------- ---------- ------STKD 501 550 ENSTTRP00000010612/1-1213 LIETCCAAGQ QWAIDNDECL DIPESGAESD VCRTAQKHCC VSYLKEKSCM ENSP00000384169/1-1231 LIETCCAAGQ QWAIDNDECL EIPESGTEDN VCRTAQRHCC VSYLQEKSCM ENSBTAP00000005240/1-1160 LIETCCAAGQ QWAIDSDECL DIPESGAEGD ACRTAQKQCC VSYLKEKSCM BACU010001/1-1194 LIETCCAAGQ QWAIDNDECL DIPESGAESD VCRTAQKHCC VSYLKEKSCM bmy_19223T0/1-783 LIETCCAAGQ QWAIDNDECL DIPESGAESD VCRTAQKHCC VSYLKEKSCM 551 600 ENSTTRP00000010612/1-1213 AGVMGAKEGA ACGDEDSDTC GVSLYK---- ---------Q CCDCCGLGLR ENSP00000384169/1-1231 AGVLGAKEGE TCGAEDNDSC GISLYK---- ---------Q CCDCCGLGLR ENSBTAP00000005240/1-1160 AGVLGAKEGE ACGDEDSDTC GVSLYK---- ---------Q CCDCCGLGLR BACU010001/1-1194 AGVMGAKEGE ACGDEDNDTC GVSLYKASLP WGGCGLSLQQ CCDCCGLGLR bmy_19223T0/1-783 AGVMGAKEGE ACGDEDNDTC GVSLYKASLP WGVCGLSLKQ CCDCCGLGLR 601 650 ENSTTRP00000010612/1-1213 VRAEGQSCES NPNLGYPCNH VMLSCCEGED PLIVPEVRRP PEPEAVPRRX ENSP00000384169/1-1231 VRAEGQSCES NPNLGYPCNH VMLSCCEGEE PLIVPEVRRP PEPAAAPRRV ENSBTAP00000005240/1-1160 VRAEGQSCES NPNLGYPCNH VMLSCCEGED PLIVPEVRRP PEPEAVPRRV BACU010001/1-1194 VRAEGQSCES NPNLGYPCNH VMLSCCEGED PLIVPEVRRP PEPEAVPRRV bmy_19223T0/1-783 VRAEGQSCES NPNLGYPCNH VMLSCCEGED PLIVPEVRRP PEPEAVPRRV 651 700 ENSTTRP00000010612/1-1213 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000384169/1-1231 SEAEMAGREA LSLGTEAELP NSLPGDDQDE CLLLPGELCQ HLCINTVGSY ENSBTAP00000005240/1-1160 SEAELASREA LSLGTETELP NSLPGDDQDE CLLLPGELCQ HLCINTVGSY BACU010001/1-1194 SEAELTSREA LSLGTETELP NSLPGDDQDE CLLLPGELCQ HLCINTVGSY bmy_19223T0/1-783 SEAELTSREA LSLGTETELP NSLPGDDQDE CLLLPGELCQ HLCINTVGSY 701 750 ENSTTRP00000010612/1-1213 XXXXXXXXXX XXXXXXXXXX GDRPKPEAAE ESAVRPESSQ VVPNTIALPV ENSP00000384169/1-1231 HCACFPGFSL QDDGRTCRPE GHPPQPEAPQ EPALKSEFSQ VASNTIPLPL ENSBTAP00000005240/1-1160 RCACFPGFSL QDDGRTCRPE GAPPKPEAAE ESAQRPESAQ VAPNTIALPV BACU010001/1-1194 HCACFPGFSL QDDGRTCRPD GDRPKPEAAE ESALRPESSQ VAPNTIALPV bmy_19223T0/1-783 HCACFPGFSL QDDGRTCRPD GDRPKPEAAE ESALRPESSQ VAPNTIALPV 751 800 ENSTTRP00000010612/1-1213 PQPNTCKDNG PCKQVCSVVG DTAMCSCFPG YAIMADGVSC EXXXXXXXXX ENSP00000384169/1-1231 PQPNTCKDNG PCKQVCSTVG GSAICSCFPG YAIMADGVSC EDQDECLMGA ENSBTAP00000005240/1-1160 PQPNTCQDNG PCKQVCRVVG DTAMCSCFPG YAIMADGVSC E--------- BACU010001/1-1194 PQPNTCKDNG PCKQVCSVVG DTAMCSCFPG YAIMADGVSC EDQDECLLGT bmy_19223T0/1-783 PQPNTCKDNG PCKQVCSVVG DTAMCSCFPG YAIMADGVSC E--------- 801 850 ENSTTRP00000010612/1-1213 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXI NECVTDLHTC ENSP00000384169/1-1231 HDCSRRQFCV NTLGSFYCVN HTVLCADGYI LNAHRKCVDI NECVTDLHTC ENSBTAP00000005240/1-1160 ---------- ---------- ---------- --------DI NECVTDLHTC BACU010001/1-1194 HDCSWRQFCV NTLGSFYCVN HTVVCAEGFI LNAHRKCVDI NECVTDLHTC bmy_19223T0/1-783 ---------- ---------- ---------- --------DI NECVTDLHTC 851 900 ENSTTRP00000010612/1-1213 SRGEHCMNTV GSFRCYKALT CESGYMLKDG ECTDVDECEL GTHNCQAGSV ENSP00000384169/1-1231 SRGEHCVNTL GSFHCYKALT CEPGYALKDG ECEDVDECAM GTHTCQPGFL ENSBTAP00000005240/1-1160 SRREHCVNTV GSFHCYKALT CEPGYRLEDG ECTDVDECEL GTHNCQAGAV BACU010001/1-1194 SRGEHCMNTV GSFRCYKALT CESGYMLKDG ECTDVDECEL GTHNCQAGSA bmy_19223T0/1-783 SRGEHCMNTV GSFRCYKALT CESGYMLKDG ECTDVDECEL GTHNCQAGSA 901 950 ENSTTRP00000010612/1-1213 CHNTKGSFYC QARQRCMEGF LQDPEGNCVD INECTSLSEP CRPGFSCVNT ENSP00000384169/1-1231 CQNTKGSFYC QARQRCMDGF LQDPEGNCVD INECTSLSEP CRPGFSCINT ENSBTAP00000005240/1-1160 CHNTKGSFYC QARQRCLEGF LQDPEGNCVD INECTSLSEP CRPGFSCINT BACU010001/1-1194 CHNTKGSFYC QARQRCMEGF LQDPEGNCVD INECTSLSEP CRPGFSCINT bmy_19223T0/1-783 CHNTKGSFYC QARQRCMEGF LQDPEGNCVD INECTSLSEP CRPGFSCINT 951 1000 ENSTTRP00000010612/1-1213 VGSYTCQRNP VICGRGYHAS QDGTKCVDVN ECEAGVHRCG EGQVCHNLPG ENSP00000384169/1-1231 VGSYTCQRNP LICARGYHAS DDGTKCVDVN ECETGVHRCG EGQVCHNLPG ENSBTAP00000005240/1-1160 VGSYTCQRNP VICGRGYHAS QDGTKCVDVN ECETGVHRCG EGQVCHNLPG BACU010001/1-1194 VGSYTCQRNP VICGRGYHAS QDGTKCVDVN ECESGVHRCG EGQVCHNLPG bmy_19223T0/1-783 VGSYTCQRNP VICGRGYHAS QDGTKCVDVN ECESGVHRCG EGQVCHNLPG 1001 1050 ENSTTRP00000010612/1-1213 SYRCDCKPGF QRDAFGRACV DVNECWSSPS RLCQHACENT LGSYRCSCAS ENSP00000384169/1-1231 SYRCDCKAGF QRDAFGRGCI DVNECWASPG RLCQHTCENT LGSYRCSCAS ENSBTAP00000005240/1-1160 SYRCDCKPGF QRDAFGRTCI DVNECWTSPT RLCQHTCENT LGSYRCSCAS BACU010001/1-1194 SYRCDCKPGF QRDAFGRACV DVNECWTSPS RLCQHTCENT LGSYRCSCAS bmy_19223T0/1-783 SYRCDCKPGF QRDAFGRACV DVNECWTSPS RLCQHTCENT LGSYRCSCAS 1051 1100 ENSTTRP00000010612/1-1213 GFRLAADGKR CEDVNECEAQ RCSQECANIY GSYQCYCRQG YQLAEDGHTC ENSP00000384169/1-1231 GFLLAADGKR CEDVNECEAQ RCSQECANIY GSYQCYCRQG YQLAEDGHTC ENSBTAP00000005240/1-1160 GFLLAADGKH CEDVNECEAQ RCSQECANIY GSYQCYCRQG YQLAEDGHTC BACU010001/1-1194 GFLLAADGKR CEDVNECEAQ RCSQECANIY GSYQCYCRQG YQLAEDGHTC bmy_19223T0/1-783 GFLLAADGKR CEDVNECEAQ RCSQECANIY GSYQCYCRQG YQLAEDGHTC 1101 1150 ENSTTRP00000010612/1-1213 TDIDECAQGA GILCTFRCIN VPGSYQCVCP ERGYTMTANG RSCKXXXXXX ENSP00000384169/1-1231 TDIDECAQGA GILCTFRCLN VPGSYQCACP EQGYTMTANG RSCKDVDECA ENSBTAP00000005240/1-1160 TDIDECAQGA SILCTFRCIN VPGSYQCTCP ERGYTMTANG RSCKDLDECA BACU010001/1-1194 TDIDECAQGA GILCTFRCIN VPGSYQCACP ERGYTMTANG RSCKDLDECA bmy_19223T0/1-783 TDIDECAQGA GILCTFRCIN VPGSYQCACP ERGYTMTANG RSCKDLDECA 1151 1200 ENSTTRP00000010612/1-1213 XXXXXXXXXX XXXXXXXXXX XXXXECPPNY VRVSETKCER ALCHDFMECQ ENSP00000384169/1-1231 LGTHNCSEAE TCHNIQGSFR CLRFECPPNY VQVSKTKCER TTCHDFLECQ ENSBTAP00000005240/1-1160 LGTHNCSEAE TCHNIQGGFR CLRFDCPPNY VRVSETKCER ALCHDFLECQ BACU010001/1-1194 LGTHNCSEAE TCHNIQGGFR CLRFECPPNY VRVSETSEAQ GW-------- bmy_19223T0/1-783 LGTHNCSEAE TCHNIQGGFR CLRFECPPNY VRVSETKCER ALCHDFMECQ 1201 1250 ENSTTRP00000010612/1-1213 NAPARITYYR LNFQTGLLVP AHIFRISPVP AFAGDTIALT ITKGNEEGYF ENSP00000384169/1-1231 NSPARITHYQ LNFQTGLLVP AHIFRIGPAP AFTGDTIALN IIKGNEEGYF ENSBTAP00000005240/1-1160 NAPARITHYR LNFQTGLLVP AHIFRISPVP AFAGDTIALT ITKGNEEGYF BACU010001/1-1194 SGPAGAKVYV LVL------- -------PTP A--------- ---------- bmy_19223T0/1-783 NAPARITYYR LNFQTGLLVP AHIFRISPVP AFAGDTIALT ITKGNEEGYF 1251 1300 ENSTTRP00000010612/1-1213 GTRRLNAYTG VVFLQRSVRE PRDFALDVEM KLWRQGSVTT FLAKMHIFFT ENSP00000384169/1-1231 GTRRLNAYTG VVYLQRAVLE PRDFALDVEM KLWRQGSVTT FLAKMHIFFT ENSBTAP00000005240/1-1160 GTRRLNAYTG VVFLQRTVRE PRDFALDVEM KLWRQGSVTT FLAKMHIFFT BACU010001/1-1194 ---------- ---------- ---------- ---------- ---------- bmy_19223T0/1-783 GTRRLNAYTG VVFLQRSVRE PRDFALDVEM KLWRQGSVTT FLAKMHIFFT 1301 1350 ENSTTRP00000010612/1-1213 TFAL ENSP00000384169/1-1231 TFAL ENSBTAP00000005240/1-1160 AFAL BACU010001/1-1194 TVTL bmy_19223T0/1-783 TFAL