KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:08 2014 Check: 00 .. Name: ENSP00000402758/1-668 Len: 812 Check: 8038 Weight: 1.00 Name: ENSBTAP00000005250/1-649 Len: 812 Check: 533 Weight: 1.00 Name: bmy_03940T0/1-811 Len: 812 Check: 2669 Weight: 1.00 Name: ENSTTRP00000014208/1-662 Len: 812 Check: 8736 Weight: 1.00 Name: BACU008122/1-649 Len: 812 Check: 7368 Weight: 1.00 // 1 50 ENSP00000402758/1-668 ---------- ---------- ----MDLVLK RCLLHLAVIG ALLAVGATKV ENSBTAP00000005250/1-649 ---------- ---------- ----MDLVLR KYLLHVALMG VLLAVGTTEG bmy_03940T0/1-811 MSIRFLYRGL SYAPAPLVAG KKNRMDLVLR KCLLHVAVMG ALLAVGATEG ENSTTRP00000014208/1-662 ---------- ---------- ----MDLVLR KCLLHVAVMG ALLAVGATEG BACU008122/1-649 ---------- ---------- ----MDLVLR KCLLHVAVMG ALLAVGATEG 51 100 ENSP00000402758/1-668 PRNQDWLGVS RQLRTKAWNR QLYPEWTEAQ RLDCWR---- -----GGQVS ENSBTAP00000005250/1-649 PRDRDWLGVS RQLRIKAWNR QLYPEWTESQ GPDCWR---- -----GGHIS bmy_03940T0/1-811 PRDRDWLGVS RQLRTKAWNR QLYPEWTESQ GPDCWRGGNL AISGEGGQVS ENSTTRP00000014208/1-662 PRDRDWLGVS RQLRTKAWNR QLYPEWTESQ GPHCWR---- -----GGQVS BACU008122/1-649 PRDRDWLGVS RQLRTKAWNR QLYPEWTESQ GPDCWR---- -----GGQVS 101 150 ENSP00000402758/1-668 LKVSNDGPTL IGANASFSIA LNFPGSQKVL PDGQVIWVNN TIINGSQVWG ENSBTAP00000005250/1-649 LKVSNDGPTL IGANASFSIA LHFPKSQKVL PDGQVIWANN TIINGSQVWG bmy_03940T0/1-811 LKVSNDGPTL LGANASFSIA LHFPESQKVL SDGQVIWANN TIINGSQVWG ENSTTRP00000014208/1-662 LKVSNDGPTL RGANASFSIA LHFPESQKVL SDGQVIWANN TIINGSQVWG BACU008122/1-649 LKVSNDGPTL LGANASFSIA LHFPESQKVL SDGQVIWANN TIINGSQVWR 151 200 ENSP00000402758/1-668 GQPVYPQETD DACIFPDGGP CPSGSWSQKR SFVYVWKTWG QYWQVLGGPV ENSBTAP00000005250/1-649 GQLVYPQEPD DTCIFPDGEP CPSGPLSQKR CFVYVWKTWD QYWQVLGGPV bmy_03940T0/1-811 GQPVYPQEPD DTCIFPDGRA CPSGPSPQRR SFVYVWKTWG QYWQVLGGPV ENSTTRP00000014208/1-662 GQPVYPQEPD DTCIFPDGRA CPPGPSPQRR SFVYVWKTWG QYWQVLGGPV BACU008122/1-649 GQPVYPQEPD DTCIFPDGRA CPSGPSPQRR SFVYVWKTWG QYWQVLGGPV 201 250 ENSP00000402758/1-668 SGLSIGTGRA MLGTHTMEVT VYHRRGSRSY VPLAHSSSAF TITDQVPFSV ENSBTAP00000005250/1-649 SGLSIGTDKA MLGTYNMEVT VYHRRGSQSY VPLAHSSSAF TITDQVPFSV bmy_03940T0/1-811 SGLSIGTGKA VLGTHIMEVT VYHRRGSQSY VSLAHSRSAF TITDQVPFSV ENSTTRP00000014208/1-662 SGLSIGTGKA VLGTHIMEVT VYHRRGSQSY VSLAHSRSAF TITDQVPFSV BACU008122/1-649 SGLSIGTGKA VLGTHIMEVT VYHRRGSQSY ISLAHSRSAF TITDQVPFSV 251 300 ENSP00000402758/1-668 SVSQLRALDG GNKHFLRNQP LTFALQLHDP SGYLAEADLS YTWDFGDSSG ENSBTAP00000005250/1-649 SVSQLQALDG RNKRFLRKQP LTFALQLHDP SGYLAGADLS YTWDFGDSTG bmy_03940T0/1-811 SVSRLQALDG ANKHFLRKQP LTFALQLHDP SGYLAGADLS YTWDFGDSTG ENSTTRP00000014208/1-662 SVSQLQALDG MNNHFLRKQP LTFALRLHDP SGYLAGADLS YTWDFGDSTG BACU008122/1-649 SVSRLQALDG ANKHFLRKQP LTFALQLHDP SGYLAGADLS YTWDFGDSTG 301 350 ENSP00000402758/1-668 TLISRALVVT HTYLEPGPVT AQVVLQAAIP LTSCGSSPVP GTTDGHRPTA ENSBTAP00000005250/1-649 TLISRALTVT HTYLESGPVT AQVVLQAAIP LTSCGSSPVP GTTDRHVTTA bmy_03940T0/1-811 TLISRALVVT HTYLESGPVT AQVVLQAAIP LTSCGSSPVP GTTAGHMPTA ENSTTRP00000014208/1-662 TLISRALVVT HTYLESGPVT AQVVLQAAIP LTSCGSSPVP GTTAGHRPTA BACU008122/1-649 TLISRALVVT HTYLESGPVT AQVVLQAAIP LTSCGSSPVP GTTAGHMPTA 351 400 ENSP00000402758/1-668 EAPNTTAGQV PTTEVVGTTP GQAPTAEPSG TTSVQVPTTE VI-------- ENSBTAP00000005250/1-649 EAPGTTAGQV PTTEVMGTTP GQVPTAEAPG TTVGWV---- ---------- bmy_03940T0/1-811 EAPGTTAGQV PTAEVVGTTP AQIPTAEPSG TTAVQVPTAE GTGTTAGQVP ENSTTRP00000014208/1-662 EGTGTTAGQV PTAEVVGTTP AQVPTAEPSG TTAVQVPTTE VV-------- BACU008122/1-649 EAPGTTAGQV PTAEVVGTTP AQVPTAEPSG TTAVQV---- ---------- 401 450 ENSP00000402758/1-668 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005250/1-649 ---------- ---------- ---------- ---------- ---------- bmy_03940T0/1-811 TAEVVGTTPA QVPTTEPSGT TAVQVPTAEG TGTTAGQVPT AEVVGTXEPS ENSTTRP00000014208/1-662 ---------- ---------- ---------- ---------- ---------- BACU008122/1-649 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000402758/1-668 ---------- ---------- ---------- ---------S TAPVQMPTAE ENSBTAP00000005250/1-649 ---------- ---------- ---------- ---------- ------PTTE bmy_03940T0/1-811 GTTAVQVPTA EGTGTTAGQV PTAEVVGTTP AQVPTAEPSG TTAVQVPTAE ENSTTRP00000014208/1-662 ---------- ---------- ---------- ---------G TTPVQIPTAE BACU008122/1-649 ---------- ---------- ---------- ---------- ------PTAE 501 550 ENSP00000402758/1-668 STGMTPEKVP VSEVMGTTLA EMSTPEATGM TPAEVSIVVL SGTTAAQVTT ENSBTAP00000005250/1-649 DVGTTPEQVA TSKVLSTTPV EMPTAKATGR TP-EVSTTEP SGTTVTQGTT bmy_03940T0/1-811 GTGTTPEQVL TSEVVSTTPA EMPTAEAIGT TP-EVSTAEP SGTTVAQVTT ENSTTRP00000014208/1-662 GTGTTAEQVL ASEVISTTPA EMPTAEAIGT TP-EVSTAEP SGTTVAQVTT BACU008122/1-649 GTGTTPEQVL TSEVISTTPA EMPTAEAIGT TP-EVSTAEP SGTTVAQVTT 551 600 ENSP00000402758/1-668 TEWVETTARE LPIPEPEGPD ASSIMSTESI TGSLGPLLDG TATLRLVKRQ ENSBTAP00000005250/1-649 PELVETTAGE VSTPEPAGSN TSSFMPTEGT AGSLSPLPDD TATLVLEKRQ bmy_03940T0/1-811 TELVETIAGE VPTPKPDSPD ASPFLSTEGV TGSQSPLLDD TATLILVKRQ ENSTTRP00000014208/1-662 TELVETTAGE VPTPEPDSPD ASPFLSTEGI TGSQSPLLDD TATLILVKRQ BACU008122/1-649 TELVETIAGE VPTPEPDSPD ASPFLSTEGI TGSQSPLLDD TATLILVKRQ 601 650 ENSP00000402758/1-668 VPLDCVLYRY GSFSVTLDIV QGIESAEILQ AVPSGEGDAF ELTVSCQGGL ENSBTAP00000005250/1-649 APLDCVLYRY GSFSLTLDIV QGIESAEILQ AVSSSEGDAF ELTVSCQGGL bmy_03940T0/1-811 VPLDCVLYRY GSFSLTLDIV QGIESAEILQ AVPSSEGDAF ELTVSCQGGL ENSTTRP00000014208/1-662 VPLDCVLYRY GSFSLTLDIV QGIESAEILQ AVPSSEGDAF ELTVSCQGGL BACU008122/1-649 VPLDCVLYRY GSFSLTLDIV QGIESAEILQ AVPSSEGDAF ELTVSCQGGL 651 700 ENSP00000402758/1-668 PKEACMEISS PGCQPPAQRL CQPVLPSPAC QLVLHQILKG GSGTYCLNVS ENSBTAP00000005250/1-649 PKEACMDISS PGCQLPAQRL CQPVPPSPAC QLVLHQVLKG GSGTYCLNVS bmy_03940T0/1-811 PKEACMDISS PGCQPPVQRL CQPVPPSPAC QLVLHQVLKG GSGTYCLNVS ENSTTRP00000014208/1-662 PKEACIDISS PGCQPPAQRL CQPVPPSPDC QLVLHQVLKG GSGTYCLNVS BACU008122/1-649 PKEACVDISS PGCQPPVQRL CQPVPPSPAC QLVLHQVLKG GSGTYCLNVS 701 750 ENSP00000402758/1-668 LADTNSLAVV STQLIMPVPG ILLTGQEAGL GQVPLIVGIL LV------LM ENSBTAP00000005250/1-649 LADANSLAMV STQLVMP--- ----GQEAGL RQAPLFVGIL LV------LT bmy_03940T0/1-811 LADANSLAMV STQLVMPGRY LDREGEGARI KAKEAWDMIY PLRWRSTNRL ENSTTRP00000014208/1-662 LADADSLAMV STQLVMP--- ----GQEAGF GQAPLFLGIL LV------LM BACU008122/1-649 LADANSLAMV STQLVMP--- ----GQEAGF GQAPLFLGIL LV------LM 751 800 ENSP00000402758/1-668 AVVLASLI-- ----YRRRLM KQD--FSVPQ LPHSSSHWLR LPRIFCSCPI ENSBTAP00000005250/1-649 ALLLASLI-- ----YRRRLM KQGSAVPLPQ LPHGRTQWLR LPWVFRSCPI bmy_03940T0/1-811 PLTTANQYPR FSPNIRRRRT KQGSALPLPQ LPPGRTQWLR LPWVFRSCPI ENSTTRP00000014208/1-662 ALLLASLV-- ----YRRRRT KQGRALPLPQ LPPGRTQWLR LPWVFRSCPI BACU008122/1-649 ALLLASLI-- ----YRRRRT KQGSALPLPQ LPPGRTQWLR LPWVFRSCPI 801 850 ENSP00000402758/1-668 GENSPLLSGQ QV ENSBTAP00000005250/1-649 GESKPLLSGQ QV bmy_03940T0/1-811 GESSPLLSGQ QV ENSTTRP00000014208/1-662 GESSPLLSGQ QV BACU008122/1-649 GESSPLLSGQ QV