KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:10 2014 Check: 00 .. Name: ENSP00000241436/1-870 Len: 1260 Check: 890 Weight: 1.00 Name: ENSBTAP00000005265/1-877 Len: 1260 Check: 9930 Weight: 1.00 Name: ENSTTRP00000009240/1-871 Len: 1260 Check: 1277 Weight: 1.00 Name: bmy_12860T0/1-843 Len: 1260 Check: 4232 Weight: 1.00 Name: BACU006184/1-1240 Len: 1260 Check: 6815 Weight: 1.00 // 1 50 ENSP00000241436/1-870 -------MDS TKEKCDSYKD DLLLRMGLND NKAGMEGLDK EKINKIIMEA ENSBTAP00000005265/1-877 MGSTKEKSDG TKEKNDNYKD DLLLRMGLND NKAGMEGLDK EKINKIIMEA ENSTTRP00000009240/1-871 -------MDS TEEKNDSYKD DLLLRVGLND NKAGMEGLDK EKINKIIMEA bmy_12860T0/1-843 MDSTEEKNDS TKEKNDNYKD DLLLRMGLND NKAGMEGLDK EKINKIIMEA BACU006184/1-1240 MDSTEEKNDS TKEKNDNYKD DLLLRVGLND NKAGMEGLDK EKINKIIMEA 51 100 ENSP00000241436/1-870 TKGSRFYGNE LKKEKQVNQR IENMMQQKAQ ITSQQLRKAQ LQVDRFAMEL ENSBTAP00000005265/1-877 TKGSRFYGNE LKKEKQVNQR IENMMQQKAK ITSEQLRKAQ LQVDRFAVEL ENSTTRP00000009240/1-871 TKGSRFYGNE LKKEKQVNQR IENMMQQKAQ ITSQQLRKAQ LQVDRFAMEL bmy_12860T0/1-843 TK-------- ---------- ---------- ---------- --VDRFAMEL BACU006184/1-1240 TKGSRFYGNE LKKEKQVNQR IENMMQQKAQ ITSQQLRKAQ LQVDRFAMEL 101 150 ENSP00000241436/1-870 EQSRNLSNTI VHIDMDAFYA AVEMRDNPEL KDKPIAVGSM SMLSTSNYHA ENSBTAP00000005265/1-877 EQSRDLNSTI VHIDMDAFYA AVEMRDNPEL KDKPIAVGSM SMLSTSNYHA ENSTTRP00000009240/1-871 EHSRDLNNTI VHIDMDAFYA AVEMRDNPEL KDKPIAVGSV SMLXXXXXXX bmy_12860T0/1-843 EHSRDLNHTI VHIDMDAFYA AVEMRDNPEL KDKPIAVGSV SMLSTSNYHA BACU006184/1-1240 EHSRDLNNTI VHIDMDAFYA AVEMRDNPEL KDKPIAVGSV SMLSTSNYHA 151 200 ENSP00000241436/1-870 RRFGVRAAMP GFIAKRLCPQ LIIVPPNFDK YRAVSKEVKE ILADYDPNFM ENSBTAP00000005265/1-877 RRFGVRAAMP GFIAKRLCPQ LIIVPPNFDK YQAVSREVKE ILTDYDPNFM ENSTTRP00000009240/1-871 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXVKE ILADYDPNFM bmy_12860T0/1-843 RRFGVRAAMP GFIAKRLCPQ LIIVPPNFDK YRAVSREVKE ILADYDPNFM BACU006184/1-1240 RRFGVRAAMP GFIAKRLCPQ LIIVPPNFDK YRAVSREVKD ILADYDPNFM 201 250 ENSP00000241436/1-870 AMSLDEAYLN ITKHLEERQN WPEDKRRYFI KMGSSVENDN PGKEVNKLSE ENSBTAP00000005265/1-877 AMSLDEAYLN ITKHLEERKN WPEDKRKYFI TAGNSLENDK PGKEVNELSE ENSTTRP00000009240/1-871 AMSLDEAYVN ITKHLEERQN WPEDKRKYFI KTGNSLENDK PGKEVNKLHE bmy_12860T0/1-843 ALSLDEAYVN ITKHLEERQN WPEDKRKYFI KTGNSLENDK PGKEVNKLRE BACU006184/1-1240 ALSLDEAYVN ITKHLEERQN WPEDKRKYFI KTGNSLENDK PGKEVNKLRE 251 300 ENSP00000241436/1-870 HERSISPLLF EESPSDVQPP GDPFQVNFEE QNNPQILQNS VVFGTSAQEV ENSBTAP00000005265/1-877 HEGSISPLLF EDSPPDLQSP GNPSQVNFEE PNNPQIHQNS IVFGTSAEEV ENSTTRP00000009240/1-871 QERSISPLLF EDSPPDLQSP GNPFQVNFEE LNNLQILQNS IVFGTSAEEV bmy_12860T0/1-843 QERSISPLLF EDSPPDLQSP GNPFQVNFEE LNNLQILQNS IVFGTSAEEV BACU006184/1-1240 QARSISPLLF EDSPPDLQSP GNPFQVNFEE LNNLQILQNS IVFGTSAEEV 301 350 ENSP00000241436/1-870 VKEIRFRIEQ KTTLTASA-- ----GIAPNT MLAKVCSDKN KPNGQYQILP ENSBTAP00000005265/1-877 VKEIRFRIEQ KTTLTASA-- ----GIAPNT MLAKVCSDKN KPNGQYQILP ENSTTRP00000009240/1-871 VKEIRFRIEQ KTTLTASA-- ----GIAPNT MLAKVCSDKN KPNGQYQILP bmy_12860T0/1-843 VKEIRFRIEQ KTTLTASAEY REPIGIAPNT MLAKVCSDKN KPNGQYQILP BACU006184/1-1240 VKEIRFRIEQ KTTLTASA-- ----GIAPNT MLAKVCSDKN KPNGQYQILP 351 400 ENSP00000241436/1-870 NRQAVMDFIK DLPIRKVSGI GKVTEKMLKA LGIITCTELY QQRALLSLLF ENSBTAP00000005265/1-877 NRQAVMDFIK DLPIRKVSGI GKVTEKMLKA LGIITCTELY QQRALLSLLF ENSTTRP00000009240/1-871 NRQAVMDFIK DLPIRKVSGI GKVTEKMLKA LGIITCTELY QQRALLSLLF bmy_12860T0/1-843 NRQAVMDFIK DLPIRKVSGI GKVTEKMLKA LGIITCTELY QQRALLSLLF BACU006184/1-1240 NRQAVMDFIK DLPIRKVSGI GKVTEKMLKA LGIITCTELY QQRALLSLLF 401 450 ENSP00000241436/1-870 SETSWHYFLH ISLGLGSTHL TRDGERKSMS VERTFSEINK AEEQYSLCQE ENSBTAP00000005265/1-877 SETSWHHFLH ISLGLGSTHL ARDGERKSMS VERTFSEISK AEEQYSLCQE ENSTTRP00000009240/1-871 SETSWHYFLH ISLGLGSTQL AXXXXXXXXX XXXTFSEISK AEEQYSLCQE bmy_12860T0/1-843 SETSWHYFLH ISLGLGSTHL ARDGERKSMS VERTFSEISK AEEQYSLCQE BACU006184/1-1240 SETSWHYFLH ISLGLGSTHL A--------- --RTFSEISK AEEQYSLCQE 451 500 ENSP00000241436/1-870 LCSELAQDLQ KERLKGRTVT IKLKNVNFEV KTRASTVSSV VSTAEEIFAI ENSBTAP00000005265/1-877 LCSELAQDLQ KKGLKGRTVT IKLKNVNFEV KTRASTVSTV VSTAEEIFVI ENSTTRP00000009240/1-871 LCSELAQDLQ KEGLKGRTVT IKLKNVNFEV KTRASTVSSV VSTAEEIFAI bmy_12860T0/1-843 LCSELAQDLQ KEGLKGRTVT IKLKNVNFEV KTRASTVSSV VSTAEEIFAI BACU006184/1-1240 LCSELAQDLQ KEGLKGRTVT IKLKNVNFEV KTRASTVSSV VSTAEEIFAI 501 550 ENSP00000241436/1-870 AKELLKTEID ADFPHPLRLR LMGVRISSFP NEEDRKHQQR SIIGFLQAGN ENSBTAP00000005265/1-877 AKELLRTEID ADFPQPLRLR LMGVRLSGFP NEEEKKHQQR SIIGFLQPGN ENSTTRP00000009240/1-871 AKELLITEID FDFPHPLRLR LMGVRLSGFP NEEEKKCQQR SIIGFLQPGN bmy_12860T0/1-843 AKELLRTEID ADFPHPLRLR LMGVRLSSFP NEEEKKHQQR SIIGFLQPGN BACU006184/1-1240 AKELLRTEID ADFPHPLRLR LMGVRLSGFP NEEEKKHQQR SIIGFLQPGN 551 600 ENSP00000241436/1-870 QALSATECTL EKTDKDKFVK PLEMSHKKSF FDKKRSERKW SHQDTFKCEA ENSBTAP00000005265/1-877 QALSATGCIL EKTDKDQFLK PAQMSHKKSF FDKKRSERKA SPQDTFTCET ENSTTRP00000009240/1-871 QALSATRCTP EKTDKDQFLK PLEMSHKKSF FDKKRSERNW SYQDTFKCET bmy_12860T0/1-843 QALSATRCTL EKTDKDQFLK PLEMAHKKSF FDKKRSERNW SYQDTFKCET BACU006184/1-1240 QALSATRCIL KKTDKDQFLK PLEMAHKKSF FDKKRSERNW SYQDTFKCET 601 650 ENSP00000241436/1-870 VNKQSFQTSQ PFQVLKKKMN ENLEISENSD DCQILTCPVC FRAQGCISLE ENSBTAP00000005265/1-877 VNKQSLQTSQ SFQVLNKKMS ENLETEEKSH SCQTFTCPVC FREQGSVSLE ENSTTRP00000009240/1-871 VDKQSLQTSQ FFQVLKKRMS ENLETLENSD NCHIFTCPVC FREQGSISLE bmy_12860T0/1-843 VDKQSLQTSQ SFQVLKKRMS ENLETLENSD NCHIFTCPVC FREQGSISLE BACU006184/1-1240 VDKQSLQTSQ SFQVLKKRMS ENLETLENSD NCHIFTCPVC FREQGSISLE 651 700 ENSP00000241436/1-870 ALNKHVDECL DGPSISENFK MFSCSHVSAT KVNKKENVPA S-SLCEKQDY ENSBTAP00000005265/1-877 AFNKHVDACL DGPSISGNSK MSSCSHASST EVNEKENVCD SVSLCEKQGY ENSTTRP00000009240/1-871 AFNKHVDACL DGPSISGNSK MSSRSHASST EVNEKENVHD FVSVCEKQDC bmy_12860T0/1-843 AFNKHVDACL DGPSISGNSK MSSRSXASST EVNEKENVHD SVSLCEKQDY BACU006184/1-1240 AFNKHVDACL DGPSISGNSK MSSRSHASST EVNEKENVHD SVSLCEKQDY 701 750 ENSP00000241436/1-870 EAHPKIKEIS SVDCIALVDT IDNSSKAESI DALSNKHS-K EECSSLPSKS ENSBTAP00000005265/1-877 ETHQKNTEIT SVDPIELVET TGKPSNTEDT SALSNKPSEE EECSGLSSKL ENSTTRP00000009240/1-871 ETHQKNAEIT SVDSVELAET TGNQSNTEGV DALSNKHS-E EECSSLPSKS bmy_12860T0/1-843 ETHQKNTEIT SVDSVELAET TGNPSNTEGV DALSNKHS-E EECSSLPSKS BACU006184/1-1240 ETHQKNTEIT SVDSVELAET TGNPSNTEGV DVLSNKHS-E EECSSLPSKS 751 800 ENSP00000241436/1-870 FNIEHCHQNS SSTVSLENED VGSF-RQEYR QPYLCEVKTG QALVCPVCNV ENSBTAP00000005265/1-877 FNMD--PQN- SCTVSLENED VGSLRRQESP QPNLYEVISD QVLVCPVCNL ENSTTRP00000009240/1-871 FNMEHCPQN- CCAVSLENED VASLGRNEPL QPYLYEVISD QVLVCPVCNL bmy_12860T0/1-843 FNMEHCPQN- CCAVSLENED VASLRRKAPL QPYLDEVISD QVLVCPVCNL BACU006184/1-1240 FNMEHCPQN- CCAVSLENED VASLRRKEPL QPYLYEVISD QVLVCPVCNL 801 850 ENSP00000241436/1-870 EQKTSDLTLF NVHVDVCLNK SFIQELRKDK FNPVNQPKES SRSTGSSSGV ENSBTAP00000005265/1-877 EQKTSDLTLF NVHVDVCLNK GIIQELRKDK INPCNQPKES AKSTDNSGKV ENSTTRP00000009240/1-871 EQKTSDLTLF NVHVDVCLNK GIIQELRRDK VNPVNQPKES TTSTDNSGKV bmy_12860T0/1-843 EQKTSDLTLF NVHVDVCLNK GIIQELRKDK VNPVNQPKES T-STDNSGKV BACU006184/1-1240 EQKTSDLTLF NVHVDICLNK GIIQELRKDK VNPVNQPKES T-STDNSGKV 851 900 ENSP00000241436/1-870 QKAVTRTK-- ---------- -----RPG-- ---------- ---------- ENSBTAP00000005265/1-877 QKTGNKTK-- ---------- -----RPG-- ---------- ---------- ENSTTRP00000009240/1-871 QKIGTKAN-- ---------- -----RPG-- ---------- ---------- bmy_12860T0/1-843 QKIGTKAN-- ---------- -----RPG-- ---------- ---------- BACU006184/1-1240 QKIGTKANSG DRSFVCGGFL AESQGRGGVA GEVTLSSLGR MDRTITNDGM 901 950 ENSP00000241436/1-870 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005265/1-877 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009240/1-871 ---------- ---------- ---------- ---------- ---------- bmy_12860T0/1-843 ---------- ---------- ---------- ---------- ---------- BACU006184/1-1240 NALHFGAQSN NVCIVECLIQ DLHLRDLDQP DEKGRKPFLL AAERGHIEMT 951 1000 ENSP00000241436/1-870 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005265/1-877 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009240/1-871 ---------- ---------- ---------- ---------- ---------- bmy_12860T0/1-843 ---------- ---------- ---------- ---------- ---------- BACU006184/1-1240 EKLIFLNLHT SEKDKVKWTF ISLLSTRERG VTGGEDCPAP AAKHGHSPAV 1001 1050 ENSP00000241436/1-870 --LMTKYSTS KKI------- ---------- ---------- ---------- ENSBTAP00000005265/1-877 --LMTKYSAS KKP------- ---------- ---------- ---------- ENSTTRP00000009240/1-871 --LMTKYSVS KKT------- ---------- ---------- ---------- bmy_12860T0/1-843 --LMTKYSTS KKT------- ---------- ---------- ---------- BACU006184/1-1240 QVLLTQWQEI NETNENGETP FFLAVEGGHE ECSKVLLAAG SDINIPNKLN 1051 1100 ENSP00000241436/1-870 ---------- ---------- ---------- -KPNNPKHT- ---------- ENSBTAP00000005265/1-877 ---------- ---------- ---------- -KPNNPRHT- ---------- ENSTTRP00000009240/1-871 ---------- ---------- ---------- -KPNSPRHT- ---------- bmy_12860T0/1-843 ---------- ---------- ---------- -KPNSPRHT- ---------- BACU006184/1-1240 ISALQIATRN GRTSLVSFLL SENVDLHQKV ERPQTPLHVA ADLGNVELVE 1101 1150 ENSP00000241436/1-870 ---------- ---------- ---------- -LDIFFK--- ---------- ENSBTAP00000005265/1-877 ---------- ---------- ---------- -LDVFFK--- ---------- ENSTTRP00000009240/1-871 ---------- ---------- ---------- -LDIFFK--- ---------- bmy_12860T0/1-843 ---------- ---------- ---------- -LDIFFK--- ---------- BACU006184/1-1240 TLRKAGGDLK VVNKQGKAAL AVAARSNCSL IVDTLIKAKR CYAWRENFTD 1151 1200 ENSP00000241436/1-870 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005265/1-877 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009240/1-871 ---------- ---------- ---------- ---------- ---------- bmy_12860T0/1-843 ---------- ---------- ---------- ---------- ---------- BACU006184/1-1240 AQIRAIEEQW SVRRSQRLPF VLATGEESFH EHGHGALFIW LHGALVTQAM 1201 1250 ENSP00000241436/1-870 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005265/1-877 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009240/1-871 ---------- ---------- ---------- ---------- ---------- bmy_12860T0/1-843 ---------- ---------- ---------- ---------- ---------- BACU006184/1-1240 PVKHLYEELV CAGFSELAGE LPFSTDGNFR SLKMVGDGRQ KCSRATAVPA 1251 1300 ENSP00000241436/1-870 ---------- ENSBTAP00000005265/1-877 ---------- ENSTTRP00000009240/1-871 ---------- bmy_12860T0/1-843 ---------- BACU006184/1-1240 WCQNMQLLLW