KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:16 2014 Check: 00 .. Name: ENSTTRP00000000781/1-1126 Len: 1160 Check: 611 Weight: 1.00 Name: ENSP00000262186/1-1159 Len: 1160 Check: 9836 Weight: 1.00 Name: ENSBTAP00000005328/1-1096 Len: 1160 Check: 7423 Weight: 1.00 Name: bmy_12896T0/1-1091 Len: 1160 Check: 1201 Weight: 1.00 Name: BACU000707/1-691 Len: 1160 Check: 8703 Weight: 1.00 // 1 50 ENSTTRP00000000781/1-1126 ---------- ---------- ------RKFI IANARVENCA VIYCYYLFCE ENSP00000262186/1-1159 MPVRRGHVAP QNTFLDTIIR KFEGQSRKFI IANARVENCA VIYCNDGFCE ENSBTAP00000005328/1-1096 ---------- ---------- ------RKFI IANARVENCA VIYCNDGFCE bmy_12896T0/1-1091 ---------- ---------- ---------- ---------- -MWQEEGVGQ BACU000707/1-691 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000000781/1-1126 LCGYSRAEVM HRPCTCDFLH GPRTQRRAAA QIAQALLGAE ERKVEIAFYR ENSP00000262186/1-1159 LCGYSRAEVM QRPCTCDFLH GPRTQRRAAA QIAQALLGAE ERKVEIAFYR ENSBTAP00000005328/1-1096 LCGYSRAEVM QRPCTCDFLH GPRTQRRAAA QIAQALLGAE ERKVEIAFYR bmy_12896T0/1-1091 EAMARRGRTV -----CGSRG GGR-----GG QAPSGFGGPF RLVPQWPCLH BACU000707/1-691 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000000781/1-1126 KDXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000262186/1-1159 KDGSCFLCLV DVVPVKNEDG AVIMFILNFE VVMEKDMVGS PAHDTNHRGP ENSBTAP00000005328/1-1096 KDGSCFLCLV DVVPVKNEDG AVIMFILNFE VVMEKGLVGS PARDTNHRAP bmy_12896T0/1-1091 SAGSCFLCLV DVVPVKNEDG AVIMFILNFE VAMEKDMVGS PARDTNHRAP BACU000707/1-691 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000000781/1-1126 XXXXXXXXRA KTFRLKLPAL LALTARDSSV RPGSARGAGA PGAVVVDMDL ENSP00000262186/1-1159 PTSWLAPGRA KTFRLKLPAL LALTARESSV RSGGAGGAGA PGAVVVDVDL ENSBTAP00000005328/1-1096 PTSWLAAGRA KTFRLKLPAL LALTARASSV RPGSAGGAGA PGAVVVDVDL bmy_12896T0/1-1091 LTSWLASGRA KTFRLKLPAL LALTARDSSV RPGSAGGAGA PGAVVVDVDL BACU000707/1-691 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000000781/1-1126 TPAAPSIESL ALDEVTAMXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000262186/1-1159 TPAAPSSESL ALDEVTAMDN HVAGLGPAEE RRALVGPGSP PRSAPGQLPS ENSBTAP00000005328/1-1096 XPPPP----- ---------- ---------- ------PPPL PACVPGPHPS bmy_12896T0/1-1091 TPAAPSSESL ALDEVTAMDN HVAGLGPAEE RRALVGPSSP PACAPGPHPS BACU000707/1-691 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000000781/1-1126 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXX-XXX ENSP00000262186/1-1159 PRAHSLNPDA SGSSCSLART RSRESCASVR RASSADDIEA MRAGVL-PPP ENSBTAP00000005328/1-1096 PRAHSLNPDA SGSSCSLART RSRESCASVR RASSADDIEA MRTGALPPPP bmy_12896T0/1-1091 PRAHSLNPDA SGSSCSLART RSRESCASVR RASSADDIEA MRAGPL-PPP BACU000707/1-691 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000000781/1-1126 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000262186/1-1159 PRHASTGAMH PLRSGLLNST SDSDLVRYRT ISKIPQITLN FVDLKGDPFL ENSBTAP00000005328/1-1096 PRHASTGAMH PLRSGLLNST SDSDLVRYRT ISKIPQITLN FVDLKGDPFL bmy_12896T0/1-1091 PRHASTGAMH PLRSGLLNST SDSDLVRYRT ISKIPQITLN FVDLKGDPFL BACU000707/1-691 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000000781/1-1126 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000262186/1-1159 ASPTSDREII APKIKERTHN VTEKVTQVLS LGADVLPEYK LQAPRIHRWT ENSBTAP00000005328/1-1096 ASPTSDREII APKIKERTHN VTEKVTQVLS LGADVLPEYK LQAPRIHRWT bmy_12896T0/1-1091 ASPTSDREII APKIKERTHN VTEKVTQVLS LGADVLPEYK LQAPRIHRWT BACU000707/1-691 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000000781/1-1126 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000262186/1-1159 ILHYSPFKAV WDWLILLLVI YTAVFTPYSA AFLLKETEEG PPATECGYAC ENSBTAP00000005328/1-1096 ILHYSPFKAV WDWLILLLVI YTAVFTPYSA AFLLKETEEA PLAPDCGYAC bmy_12896T0/1-1091 ILHYSPFKAV WDWLILLLVI YTAVFTPYSA AFLLKETEEG PPAPDCGYAC BACU000707/1-691 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000000781/1-1126 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000262186/1-1159 QPLAVVDLIV DIMFIVDILI NFRTTYVNAN EEVVSHPGRI AVHYFKGWFL ENSBTAP00000005328/1-1096 QPLAVVDLIV DIMFIVDILI NFRTTYVNAN EEVVSHPGRI AVHYFKGWFL bmy_12896T0/1-1091 QPLAVVDLIV DIMFIVDILI NFRTTYVNAN EEVVSHPGRI AVHYFKGWFL BACU000707/1-691 ---------- --MFIVDILI NFRTTYVNAN EEVVSHPGRI AVHYFKGWFL 501 550 ENSTTRP00000000781/1-1126 XXXXXXXXXX XXXXXXXXXX LIGLLKTARL LRLVRVARKL DRYSEYGAAV ENSP00000262186/1-1159 IDMVAAIPFD LLIFGSGSEE LIGLLKTARL LRLVRVARKL DRYSEYGAAV ENSBTAP00000005328/1-1096 IDMVAAIPFD LLIFGSGSEE LIGLLKTARL LRLVRVARKL DRYSEYGAAV bmy_12896T0/1-1091 IDMVAAIPFD LLIFGSGSEE LIGLLKTARL LRLVRVARKL DRYSEYGAAV BACU000707/1-691 IDMVAAIPFD LLIFGSGSEE LIGLLKTARL LRLVRVARKL DRYSEYGAAV 551 600 ENSTTRP00000000781/1-1126 LFLLMCTFAL IAHWLACIWY AIGNMEQPHM DSRIGWLHNL GDQIGKPYNS ENSP00000262186/1-1159 LFLLMCTFAL IAHWLACIWY AIGNMEQPHM DSRIGWLHNL GDQIGKPYNS ENSBTAP00000005328/1-1096 LFLLMCTFAL IAHWLACIWY AIGNMEQPHM DSRIGWLHNL GDQIGKPYNS bmy_12896T0/1-1091 LFLLMCTFAL IAHWLACIWY AIGNMEQPHM DSRIGWLHNL GDQIGKPYNS BACU000707/1-691 LFLLMCTFAL IAHWLACIWY AIGNMEQPHV DSRIGWLHNL GDQIGKPYNS 601 650 ENSTTRP00000000781/1-1126 SGLGGPSIKD KYVTALYFTF SSLTSVGFGN VSPNTNSEKI FSICVMLIGS ENSP00000262186/1-1159 SGLGGPSIKD KYVTALYFTF SSLTSVGFGN VSPNTNSEKI FSICVMLIGS ENSBTAP00000005328/1-1096 SGLGGPSIKD KYVTALYFTF SSLTSVGFGN VSPNTNSEKI FSICVMLIGS bmy_12896T0/1-1091 SGLGGPSIKD KYVTALYFTF SSLTSVGFGN VSPNTNSEKI FSICVMLIGS BACU000707/1-691 SGLGGPSIKD KYVTALYFTF SSLTSVGFGN VSPNTNSEKI FSICVMLIGS 651 700 ENSTTRP00000000781/1-1126 LMYASIFGNV SAIIQRLYSG TARYHTQMLR VREFIRFHQI PNPLRQRLEE ENSP00000262186/1-1159 LMYASIFGNV SAIIQRLYSG TARYHTQMLR VREFIRFHQI PNPLRQRLEE ENSBTAP00000005328/1-1096 LMYASIFGNV SAIIQRLYSG TARYHTQMLR VREFIRFHQI PNPLRQRLEE bmy_12896T0/1-1091 LMYASIFGNV SAIIQRLYSG TARYHTQMLR VREFIRFHQI PNPLRQRLEE BACU000707/1-691 LMYASIFGNV SAIIQRLYSG TARYHTQMLR VREFIRFHQI PNPLRQRLEE 701 750 ENSTTRP00000000781/1-1126 YFQHAWSYTN GIDMNAVLKG FPECLQADIC LHLNRSLLQH CKPFRGATKG ENSP00000262186/1-1159 YFQHAWSYTN GIDMNAVLKG FPECLQADIC LHLNRSLLQH CKPFRGATKG ENSBTAP00000005328/1-1096 YFQHAWSYTN GIDMNAVLKG FPECLQADIC LHLNRSLLQH CKPFRGATKG bmy_12896T0/1-1091 YFQHAWSYTN GIDMNA---- ------ADIC LHLNRSLLQH CKPFRGATKG BACU000707/1-691 YFQHAWSYTN GIDMNAVLKG FPECLQADIC LHLNRSLLQH CKPFRGATKG 751 800 ENSTTRP00000000781/1-1126 CLRALAMKFK TTHAPPGDTL VHAGDLLTAL YFISRGSIXX XXXXXXXXXX ENSP00000262186/1-1159 CLRALAMKFK TTHAPPGDTL VHAGDLLTAL YFISRGSIEI LRGDVVVAIL ENSBTAP00000005328/1-1096 CLRALAMKFK TTHAPPGDTL VHAGDLLTAL YFISRGSIEI LRGDVVVAIL bmy_12896T0/1-1091 CLRALAMKFK TTHAPPGDTL VHAGDLLTAL YFISRGSIEI LRGDIVVAIL BACU000707/1-691 CLRALAMKFK TTHAPPGDTL VHAGDLLTAL YFISRGSIEI LRGDIVVAIL 801 850 ENSTTRP00000000781/1-1126 XKNDIFGEPL NLYARPGKSN GDVRALTYCD LHKIHRDDLL EVLDMYPEFS ENSP00000262186/1-1159 GKNDIFGEPL NLYARPGKSN GDVRALTYCD LHKIHRDDLL EVLDMYPEFS ENSBTAP00000005328/1-1096 GKNDIFGEPL NLYARPGKSN GDVRALTYCD LHKIHRDDLL EVLDMYPEFS bmy_12896T0/1-1091 GKNDIFGEPL NLYARPGKSN GDVRALTYCD LHKIHRDDLL EVLDMYPEFS BACU000707/1-691 GKNDIFGEPL NLYARPGKSN GDVRALTYCD LHKIHRDDLL EVLDMYPEFS 851 900 ENSTTRP00000000781/1-1126 DHFWSSLEIT FNLRDTNMIP GSPGSAELEG GFHRQRKRKL SFRRRTDRDP ENSP00000262186/1-1159 DHFWSSLEIT FNLRDTNMIP GSPGSTELEG GFSRQRKRKL SFRRRTDKDT ENSBTAP00000005328/1-1096 DHFWSSLEIT FNLRDTNMIP GSPGSAELEG GFNRQRKRKL SFRRRTDKDP bmy_12896T0/1-1091 DHFWSSLEIT FNLRDTNMIP GSPGSAELEG GFHRQRKRKL SFRRRTDKDP BACU000707/1-691 DHFWSSLEIT FNLRDTNMIP GSPGSAELEG GFHRQRKRKL SFRRRTDRDP 901 950 ENSTTRP00000000781/1-1126 EQPGEVSALG PSRAGAGLSG RGRQGGPWGE SLSSGPSSPE SSEDEGPGRS ENSP00000262186/1-1159 EQPGEVSALG PGRAGAGPSS RGRPGGPWGE SPSSGPSSPE SSEDEGPGRS ENSBTAP00000005328/1-1096 EQPGEVSALG PSRAGAGPSG RGRQGGPWGE SLSSGPSSPE SSEDEGPGRS bmy_12896T0/1-1091 EQPGEVSALG PSRAGAGPSG RGRQGGPWGE SLSSGPSSPE SSEDEGPGRS BACU000707/1-691 EQPGEVSALG PSRAGAGPSG RGRQGGPWGE SLSSGPSSPE SSEDEGPGRS 951 1000 ENSTTRP00000000781/1-1126 SSPLRLVPFS SPRPPGEPPG GDPLTEDGEK SSDTCNPLSG AFSGVSNIFS ENSP00000262186/1-1159 SSPLRLVPFS SPRPPGEPPG GEPLMEDCEK SSDTCNPLSG AFSGVSNIFS ENSBTAP00000005328/1-1096 SSPLRLVPFS SPRPPGEPPG GDPLTEDGEK SSDTCNPLSG AFSGVSNIFS bmy_12896T0/1-1091 SSPLRLVPFS SPRPPGEPPG GDPLTEDGEK SSDTCNPLSG AFSGVSNIFS BACU000707/1-691 SSPLRLVPFS SPRPPGEPPG GDPLTEDGEK SSDTCNPLSG AFSGVSNIFS 1001 1050 ENSTTRP00000000781/1-1126 FWGDSRGRQY QELPRCPAPA PSLLNIPLSS PGRRPRGDVE SRLDALQRQL ENSP00000262186/1-1159 FWGDSRGRQY QELPRCPAPT PSLLNIPLSS PGRRPRGDVE SRLDALQRQL ENSBTAP00000005328/1-1096 FWGDSRGRQY QELPRCPAPA PSLLNIPLSS PGRRPRGDVE TRLDALQRQL bmy_12896T0/1-1091 FWGDSRGRQY QELPRCPAPA PSLLNIPLSS PGRRPRGDVE SRLDALQRQL BACU000707/1-691 FWGDSRGRQY QELPRCPAPA PSLLNIPLSS PGRRPRGDVE SRLDALQRQL 1051 1100 ENSTTRP00000000781/1-1126 SRLETRLSAD MATVLQLLQR QVTLVPPAYS AVTTPGPGPT STSPLLPVSP ENSP00000262186/1-1159 NRLETRLSAD MATVLQLLQR QMTLVPPAYS AVTTPGPGPT STSPLLPVSP ENSBTAP00000005328/1-1096 NRLETRLSAD MATVLQLLQR QMTLVPPAYS AVTTPGPGPA STSPLLPAGP bmy_12896T0/1-1091 NRLETRLSAD MATVLQLLQR QMTLVPPAYS AVTTPGPGPT STSPLLPVSP BACU000707/1-691 SRLETRLSAD MATVLQLLQR QMTLVPPAYS AVTTPGPGPT STSPLLPVSP 1101 1150 ENSTTRP00000000781/1-1126 IPTLALDSLS QVSQFMACE- ------ELPQ DGPARRLSLP GQLGALTSQP ENSP00000262186/1-1159 LPTLTLDSLS QVSQFMACEE LPPGAPELPQ EGPTRRLSLP GQLGALTSQP ENSBTAP00000005328/1-1096 IPTLTLDSLS QVSQFMACE- ------ELPQ DGPARRLSLP GQLGALTSQP bmy_12896T0/1-1091 IPTLTLDSLS QVSQFMACE- ------ELPQ DGPARRLSLP GQLGALTSQP BACU000707/1-691 IPTLTLDSLS QVSQFMACE- ------ELPQ DGPARRLSLP GQLGALTSQP 1151 1200 ENSTTRP00000000781/1-1126 LHRHGSDPGS ENSP00000262186/1-1159 LHRHGSDPGS ENSBTAP00000005328/1-1096 LHRHGSDPGS bmy_12896T0/1-1091 LHRHGSDPGS BACU000707/1-691 LHRHGSDPGS