KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:19 2014 Check: 00 .. Name: ENSTTRP00000006319/1-1003 Len: 1162 Check: 5046 Weight: 1.00 Name: BACU007079/1-1130 Len: 1162 Check: 3305 Weight: 1.00 Name: ENSP00000264661/1-1017 Len: 1162 Check: 4021 Weight: 1.00 Name: ENSBTAP00000005335/1-1063 Len: 1162 Check: 7007 Weight: 1.00 Name: bmy_15671T0/1-980 Len: 1162 Check: 7210 Weight: 1.00 // 1 50 ENSTTRP00000006319/1-1003 ---------- ---FLTTIAT GSTAPHGNFL LANTQGPRGF PIVYCSDGFC BACU007079/1-1130 MPVMKGLLAP QNTFLDTIAT RFDRTHSNFL LANTQGPRGF PIVYCSDGFC ENSP00000264661/1-1017 MPVMKGLLAP QNTFLDTIAT RFDGTHSNFL LANAQGTRGF PIVYCSDGFC ENSBTAP00000005335/1-1063 MPVMKGLLAP QNTFLDTIAT RFDGTHSNFL LANAQGPRGF PIVYCSDGFC bmy_15671T0/1-980 MPVMKGLLAP QNTFLDTIAT RFDRTHSNFL LANTQGPRGF PIVYCSDGFC 51 100 ENSTTRP00000006319/1-1003 ELTGYGRTEV MQKTCNCRFL YGPETSEPAL QRLHKALEGH QEHRAEICFY BACU007079/1-1130 ELTGYGRTEV MQKTCNCRFL YGPETSEPAL QRLHKALEGH QEHRAEICFY ENSP00000264661/1-1017 ELTGYGRTEV MQKTCSCRFL YGPETSEPAL QRLHKALEGH QEHRAEICFY ENSBTAP00000005335/1-1063 ELTGYGRTEV MQKTCSCRFL YGPETSEPAL QRLHKALEGH QEHRAEICFY bmy_15671T0/1-980 ELTGYGRTEV MQKTCNCRFL YGPETSEPAL QRLHKALEGH QEHRAEICFY 101 150 ENSTTRP00000006319/1-1003 RKDGSAFWCL LDMMPIKNEM GEVVLFLFSF KDITESGGPG LGPPGGHRDS BACU007079/1-1130 RKDGSAFWCL LDMMPIKNEM GEVVLFLFSF KDITQSGGPG LGPPGGHSDS ENSP00000264661/1-1017 RKDGSAFWCL LDMMPIKNEM GEVVLFLFSF KDITQSGSPG LGPQGGRGDS ENSBTAP00000005335/1-1063 RKDGSAFWCL LDMMPIKNEM GEVVLFLFSF KDITQSGGPG LGPPGGHGDS bmy_15671T0/1-980 RKDGSAFWCL LDMMPIKNEM GEVVLFLFSF KDITQSGGPG LGPPGGHSDS 151 200 ENSTTRP00000006319/1-1003 NHEKSLGRRG ASSRLRSTRR QSHTVLHRLT GHFGRRGQGG MKT-NNVFEP BACU007079/1-1130 THENSLGRRG ASSRLRSTRR QSHTVLHRLT GHFGRRGQGG MKT-NNVFEP ENSP00000264661/1-1017 NHENSLGRRG ATWKFRSARR RSRTVLHRLT GHFGRRGQGG MKANNNVFEP ENSBTAP00000005335/1-1063 NHENSLGRRG ASSRLRSARR QSRTVLHRLT GHFGRRGQGG MKT-NNVFEP bmy_15671T0/1-980 NHENSLGRRG ASSRLRSTRR QSHTVLHRLT GHFGRRGQGG MKT-NNVFEP 201 250 ENSTTRP00000006319/1-1003 KPSVPEYKVA SVGGSRCLLL HYSVPKAIWD GLILLATFYV AVTVPYNVCF BACU007079/1-1130 KPSVPEYKVA SVGGSRCLLL HYSVPKAIWD GLILLATFYV AVTVPYNVCF ENSP00000264661/1-1017 KPSVPEYKVA SVGGSRCLLL HYSVSKAIWD GLILLATFYV AVTVPYNVCF ENSBTAP00000005335/1-1063 KPSVPEYKVA SVGGSRCLLL HYSVPKAVWD GLILLATFYV AVTVPYNVCF bmy_15671T0/1-980 KPSVPEYKVA SVGGSRCLLL HYSVPKAIWD GLILLATFYV AVTVPYNVCF 251 300 ENSTTRP00000006319/1-1003 SDDDDTPITS RHTLVSDIAV EMLFILDIIL NFRTTYVSQS GQVVSAPRSI BACU007079/1-1130 SDDDDTPITS RHTLVSDIAV EMLFILDIIL NFRTTYVSQS GQVVSAPRSI ENSP00000264661/1-1017 SGDDDTPITS RHTLVSDIAV EMLFILDIIL NFRTTYVSQS GQVISAPRSI ENSBTAP00000005335/1-1063 SGDDDTPITS RHTLVSDIAV EMLFILDIIL NFRTTYVSQS GQVVSAPRSI bmy_15671T0/1-980 SDDDDTPITS RHTLVSDIAV EMLFILDIIL NFRTTYVSQS GQVVSAPRSI 301 350 ENSTTRP00000006319/1-1003 GLHYLATWFF VDLIAALPFD LLYVFNITVT SLVHLLKTVR LLRLLRLLQK BACU007079/1-1130 GLHYLATWFF VDLIAALPFD LLYVFNITVT SLVHLLKTVR LLRLLRLLQK ENSP00000264661/1-1017 GLHYLATWFF IDLIAALPFD LLYIFNITVT SLVHLLKTVR LLRLLRLLQK ENSBTAP00000005335/1-1063 GLHYLATWFF VDLIAALPFD LLYVFNITVT SLVHLLKTVR LLRLLRLLQK bmy_15671T0/1-980 GLHYLATWFF VDLIAALPFD LLYVFNITVT SLVHLLKTVR LLRLLRLLQK 351 400 ENSTTRP00000006319/1-1003 LERYSQCSAV VLTLLMSIFA LLAHWMACVW YVVGRREMEA NDPLLWDIXX BACU007079/1-1130 LERYSQCSAV VLTLLMSVFA LLAHWMACVW YVIGRREMQA NDPLLWDIGW ENSP00000264661/1-1017 LERYSQCSAV VLTLLMSVFA LLAHWMACIW YVIGRREMEA NDPLLWDIGW ENSBTAP00000005335/1-1063 LERYSQCSAV VLTLLMSVFA LLAHWMACVW YVIGRREMEA NDPLLWDIGW bmy_15671T0/1-980 LERYSQCSAV VLTLLMSIFA LLAHWMACVW YVIGRREMQA NDPLLWDIGW 401 450 ENSTTRP00000006319/1-1003 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU007079/1-1130 LHELGKRLEV PYVNGSAGGP SRRSAYIAAL YFTLSSLTSV GFGNVCANTE ENSP00000264661/1-1017 LHELGKRLEV PYVNGSVGGP SRRSAYIAAL YFTLSSLTSV GFGNVCANTD ENSBTAP00000005335/1-1063 LHELGKRLEV PYVNGSAGGP SRRSAYIAAL YFTLSSLTSV GFGNVCANTD bmy_15671T0/1-980 LHELGKRLEV PYVNGSAGGP SRRSAYIAAL YFTLSSLTSV GFGNVCANTD 451 500 ENSTTRP00000006319/1-1003 XXXXXXXXXX XXGALMHAVV FGNVTAIIQR MYSRRSLYHS RMKDLKDFIR BACU007079/1-1130 AEKIFSICTM LIGALMHAVV FGNVTAIIQR MYSRRSLYHS RMKELKDFIR ENSP00000264661/1-1017 AEKIFSICTM LIGALMHAVV FGNVTAIIQR MYSRRSLYHS RMKDLKDFIR ENSBTAP00000005335/1-1063 AEKIFSICTM LIGALMHAVV FGNVTAIIQR MYSRRSLYHS RMKDLKDFIR bmy_15671T0/1-980 AEKIFSICTM LIGALMHAVV FGNVTAIIQR MYSRRSLYHS RMKELKDFIR 501 550 ENSTTRP00000006319/1-1003 VHRLPRPLKQ RMLEYFQTTW TVNSGIDANE LLRDFPDELR ADIAMHLNRD BACU007079/1-1130 VHRLPRPLKQ RMLEYFQTTW TVNSGIDANE LLRDFPDELR ADIAMHLNRE ENSP00000264661/1-1017 VHRLPRPLKQ RMLEYFQTTW AVNSGIDANE LLRDFPDELR ADIAMHLNRE ENSBTAP00000005335/1-1063 VHRLPRPLKQ RMLEYFQTTW AVNSGIDANE LLRDFPDELR ADIAMHLNRE bmy_15671T0/1-980 VHRLPRPLKQ RMLEYFQTTW TVNSGIDANE LLRDFPDELR ADIAMHLNRE 551 600 ENSTTRP00000006319/1-1003 ILQLPLFGAA SRGCLRALSL HIKTSFCAPG EYLLRRGDAL QAHYYVCSGS BACU007079/1-1130 ILQLPLFGAA SRGCLRALSL HIKTSFCAPG EYLLRRGDAL QAHYYVCSGS ENSP00000264661/1-1017 ILQLPLFGAA SRGCLRALSL HIKTSFCAPG EYLLRRGDAL QAHYYVCSGS ENSBTAP00000005335/1-1063 ILQLPLFGAA SRGCLRALSL HIKTSFCAPG EYLLRRGDAL QAHYYVCSGS bmy_15671T0/1-980 ILQLPLFGAA SRGCLRALSL HIKTSFCAPG EYLLRRGDAL QAHYYVCSGS 601 650 ENSTTRP00000006319/1-1003 LEVXXXXXXX XXXXKGDLIG ADIPEPGQEP GSGTAPSCVL KTSADVKALT BACU007079/1-1130 LEVLRDNMVL AILGKGDLIG ADIPEAGQEP GSGTAPSCVL KTSADVKALT ENSP00000264661/1-1017 LEVLRDNMVL AILGKGDLIG ADIPEPGQEP GLGADPNFVL KTSADVKALT ENSBTAP00000005335/1-1063 LEVLRDNMVL AILGKGDLIG ADIP----EP GSGTAPSCVL KTSADVKALT bmy_15671T0/1-980 LEVLRDNMVL AILGKGDLIG ADIPEPGQEP GSGTAPSYVL KTSADVKALT 651 700 ENSTTRP00000006319/1-1003 YCGLQQLSSR GLAEVLRLYP EYGAAFRAGL RRDLTFNLRQ GSDTNGLCRF BACU007079/1-1130 YCGLQQLSSR GLAEVLRLYP EYGAAFRAGL PRDLTFNLRQ GSDTN----- ENSP00000264661/1-1017 YCGLQQLSSR GLAEVLRLYP EYGAAFRAGL PRDLTFNLRQ GSDTSGLSRF ENSBTAP00000005335/1-1063 YCGLQQLSSQ GLAEVLRLYP EYGAAFRAGL PRDLTFNLRH GSETNGLCRF bmy_15671T0/1-980 YCGLQQLSSR GLAEVLRLYP EYGAAFRAGL PRDLTFNLRQ GSDTN----- 701 750 ENSTTRP00000006319/1-1003 SRSPRLSQTR SESLGSSSDK TQPSVTEAEA GAEPGGGPRP RRALLLPNLS BACU007079/1-1130 --------PR SESLGSSSDK TQPSVTEAEA GAEPGGGPRP RRSLLLPNLS ENSP00000264661/1-1017 SRSPRLSQPR SESLGSSSDK TLPSITEAES GAEPGGGPRP RRPLLLPNLS ENSBTAP00000005335/1-1063 SRSPRLSQPR SDSLGSSSDK TQPSVTEAEA GAEPGGGPRP RRPILLPNLS bmy_15671T0/1-980 --------PR SESLGSSSDK TQPSVTEAEA GAEPGGGPRP RRSLLLPNLS 751 800 ENSTTRP00000006319/1-1003 PARPRGSLVS LLGEELPPFS ALVSSSSLSP TPSPALAGRG HSPSPHGLPR BACU007079/1-1130 PARPRGSLVS LLGEELPPFS ALVSSPSLSP TPSPALAGRG HSPSPHGLPR ENSP00000264661/1-1017 PARPRGSLVS LLGEELPPFS ALVSSPSLSP SLSPALAGQG HSASPHGPPR ENSBTAP00000005335/1-1063 PARPRGSLVS LLGEELPPFS ALVSSPSLSP APSPALAGRG HSPSPHGPPR bmy_15671T0/1-980 PARPRGSLVS LLGEELPPFS ALVSSPSLSP TPSPALAGRG HSPSPHGLPR 801 850 ENSTTRP00000006319/1-1003 GSAAWKPPQL LIPPLGTFGP PDLSPRIVDG IEDSGSTAEA PTFRFSRRPE BACU007079/1-1130 GSAAWKPPQL LIPPLGTFGP PDLSPRIVDG IEDSGSTAEA PTFRSSRRPE ENSP00000264661/1-1017 CSAAWKPPQL LIPPLGTFGP PDLSPRIVDG IEDSGSTAEA PSFRFSRRPE ENSBTAP00000005335/1-1063 GSAAWKPPQL LIPPLGTFGP PDLSPRIVDG IEDSGSTAEA TTFRFSRRPE bmy_15671T0/1-980 GSAAWKLPQL LIPPLGTFGP PDLSPRIVDG IEDSGSTAEA PTFRFSRRPE 851 900 ENSTTRP00000006319/1-1003 HPRPHSQAPP TGTMPS---- -----REVAT EAEEVKEKVC RLNQ------ BACU007079/1-1130 HPRPHSQAPP TGTMPS---- -----REVAT EAEEVKEKVC RLNQECVSPV ENSP00000264661/1-1017 LPRPRSQAPP TGTRPS---- -----PELAS EAEEVKEKVC RLNQ------ ENSBTAP00000005335/1-1063 HPRSRSQALP IASAQSSGGN TCVLRRMVPD QSTKSHDKNG APRD------ bmy_15671T0/1-980 HPRSHSQAPP TGTMPS---- -----REVDT EAEEVKEKVC RLNQ------ 901 950 ENSTTRP00000006319/1-1003 ---------- ---------- ---------- ---------- ---------- BACU007079/1-1130 GGTDRVLFYL CVQSHRDTQH ALAPAPTLTG TTAAGRAMAG RGGAARPNGP ENSP00000264661/1-1017 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005335/1-1063 ---------- -----LKATS TAQPGPALGN GPSLGSDKHQ ASPGVHLGGA bmy_15671T0/1-980 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000006319/1-1003 -------EXX XX------XX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU007079/1-1130 AAGN---KIC QFKLVLLGES AVGKSSLVLR FVKGQFHEY- --QESTIGAA ENSP00000264661/1-1017 -------EIS RL------NQ EVSQLSRELR HIMGLLQARL GPPGHPAGSA ENSBTAP00000005335/1-1063 SPGSVGFKIS RL------NR EVSQLSQELR HMMGLLQARL GPPGHPTVSA bmy_15671T0/1-980 ---------- ---------- ---------- ------EARL GPPGHPTVSA 1001 1050 ENSTTRP00000006319/1-1003 XXXXXXC--- ---------- -PPQRPPCIS PCLSRPLPG- --LQDTTLAE BACU007079/1-1130 FLTQTVCLDD TTVKFEIWDT AGQERYHSLA PMYYRGAQAA IVVYDITNTD ENSP00000264661/1-1017 WTPDPPC--- ---------- -PQLRPPCLS PCASRPPPS- --LQDTTLAE ENSBTAP00000005335/1-1063 WPPHPPC--- ---------- -PLQRPPCSS PYMSGPPPG- --LHDTTRAE bmy_15671T0/1-980 WTPDPPC--- ---------- -APQRPPCIS PCLSRPLPG- --LQDTTLAE 1051 1100 ENSTTRP00000006319/1-1003 VHCPASVGTA EMGAAPPDLR PSMLSPYPSE PDPLRP---- ---------- BACU007079/1-1130 TFARAKNWVK ELQRQAS--- PNIVIALAGN KADLASKRAV EFQEAQAYAE ENSP00000264661/1-1017 VHCPASVGTM ETGTALLDLR PSILPPYPSE PDPLGP---- ---------- ENSBTAP00000005335/1-1063 VHCPASVGTA EMGAAHPDLR PSVRSPYLSE PDPLGP---- ---------- bmy_15671T0/1-980 VHYPASVGTA EMGAAPPDLR PSMLSPYPSE PDPLGP---- ---------- 1101 1150 ENSTTRP00000006319/1-1003 ---------- ---------- -----SPVPE ALPPNSS--- -------LMR BACU007079/1-1130 DNSLLFMETS AKTAMNVNEI FMAIAKKLPK NEPQNTACAP GRNRGVDLQE ENSP00000264661/1-1017 ---------- ---------- -----SPVPE ASPPTPS--- -------LLR ENSBTAP00000005335/1-1063 ---------- ---------- -----SPVPE APPSNSS--- -------LMR bmy_15671T0/1-980 ---------- ---------- -----SPVPE ALPPNSS--- -------LMR 1151 1200 ENSTTRP00000006319/1-1003 HSFRSRSDTF H- BACU007079/1-1130 NNPASRSQCC SN ENSP00000264661/1-1017 HSFQSRSDTF H- ENSBTAP00000005335/1-1063 HSFRSRSDTI H- bmy_15671T0/1-980 HSFRSRSDTF H-