KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:21 2014 Check: 00 .. Name: bmy_05375T0/1-270 Len: 554 Check: 7012 Weight: 1.00 Name: ENSP00000298545/1-479 Len: 554 Check: 5769 Weight: 1.00 Name: BACU016188/1-449 Len: 554 Check: 1298 Weight: 1.00 Name: ENSTTRP00000013623/1-451 Len: 554 Check: 6301 Weight: 1.00 Name: ENSBTAP00000005345/1-479 Len: 554 Check: 1949 Weight: 1.00 // 1 50 bmy_05375T0/1-270 ---------- ---------- ---------- ---------- ---------- ENSP00000298545/1-479 MDATIAPHRI PPEMPQYGEE NHIFELMQNM LEQLLIHQPE DPIPFMIQHL BACU016188/1-449 MDATTAPHRI PPEMPQYGEA NHVFELMQNM LEQLLIHQPK DPIPFMIDHL ENSTTRP00000013623/1-451 ---------- ---------- --------NM LEQLLIQQPK DPITFMIEHL ENSBTAP00000005345/1-479 MDATTAPHRI PPQMPQYGEA NHIFELMQNM LEQLLIHQPK DPIPFMIDHL 51 100 bmy_05375T0/1-270 ---------- ---------- ---------- ---------- ---------- ENSP00000298545/1-479 HRDNDNV--- -----PRIVI LGPPAS---- ---------- ---------- BACU016188/1-449 QRDNDYVLAA GKEDETQSLP PGDPLSCSAG DRAHQGCSSP LVRSGLRISE ENSTTRP00000013623/1-451 QRDNDYV--- -----PKIVI LGPPAS---- ---------- ---------- ENSBTAP00000005345/1-479 QRDNDYV--- -----PKIVI LGPPAS---- ---------- ---------- 101 150 bmy_05375T0/1-270 ---------- ---------- ---------- ---------- ---------- ENSP00000298545/1-479 ---------- GKTTI----- ----AMWLCK HLNSSLLTLE NLILNEFSYT BACU016188/1-449 EEVSGAGGCW GEEDIPDGEV TGDKAMWLGK HLNSNLLSVE SLIAQEYSSL ENSTTRP00000013623/1-451 ---------- GKTTI----- ----AMWLGK HLNSNLLSVE SLIAKEYSSL ENSBTAP00000005345/1-479 ---------- GKTTI----- ----AMWLAK HLSTNLLSVE SLIAKEYSPL 151 200 bmy_05375T0/1-270 ---------- ---------- ---------- ---------- ---------- ENSP00000298545/1-479 ATEARRLYLQ RKTVPSALLV QLIQERLAEE DCIKQGWILD GIPETREQAL BACU016188/1-449 AADARRHYQK FQTLPNTLLV RLVQERLREE DCVRRGWILD GIPETREQAL ENSTTRP00000013623/1-451 AASARTHYQK FQTLPNMLLV RLLQERLREE DCVRRGWILD GIPETREQAL ENSBTAP00000005345/1-479 AADARMHYQK FKMVPDMLLI RLMQERLKEE DCVRRGWILD GIPETREQAL 201 250 bmy_05375T0/1-270 MIQTLGVSPR HVIVLSAPDT VLIERNLGKR IDPQTGEIYH TTFDWPPESE ENSP00000298545/1-479 RIQTLGITPR HVIVLSAPDT VLIERNLGKR IDPQTGEIYH TTFDWPPESE BACU016188/1-449 MIQTLGVSPR HVIVLSAPDT VLIERNLGKR IDPQTGEIYH TTFDWPPESE ENSTTRP00000013623/1-451 LIQTLGVSPR HVIVLSAPDT VLIERNLGKR IDPQTGEIYH TTFDWPPESE ENSBTAP00000005345/1-479 TIQTLGISPR HVIVLSAPDT VLIERNLGKR IDPQTGEIYH TTFDWPPESE 251 300 bmy_05375T0/1-270 IQNRLIVPAG ISEGETARRL LEYHRDIVRI LPSYPKILKV ITADQPCVDV ENSP00000298545/1-479 IQNRLMVPED ISELETAQKL LEYHRNIVRV IPSYPKILKV ISADQPCVDV BACU016188/1-449 IQNRLIVPAG VSEGETARRL LEYHRDIVRI LPSYPKILKV IPADQPCVDV ENSTTRP00000013623/1-451 IQNRLIVPAG ISEGETARRL LEYHRNIVRI LPSYPKIVKV ITADQPCVDV ENSBTAP00000005345/1-479 IQNRLMVPAG IFEGETARKL LEYHRNIVRI LPSYPKILKV ISADQPCVDV 301 350 bmy_05375T0/1-270 FC-------- ---------- ------QALT YVQTVHRSNA PFTPRVLLCG ENSP00000298545/1-479 FY-------- ---------- ------QALT YVQSNHRTNA PFTPRVLLLG BACU016188/1-449 FCQGKPGWTL DPSLPGVTSS GSDASVQALT YVQTMHRSNA PFTPRVLLCG ENSTTRP00000013623/1-451 FY-------- ---------- ------QALT YVQTIHRSNA PFTPRVLLCG ENSBTAP00000005345/1-479 FY-------- ---------- ------QALT YVQTSHRSNA PFTPRVLLCG 351 400 bmy_05375T0/1-270 PMGSGKSLQA ALLAQKYGLV NVCCGQLLKE AVADKSKYGE MIRPFFEKEM ENSP00000298545/1-479 PVGSGKSLQA ALLAQKYRLV NVCCGQLLKE AVADRTTFGE LIQPFFEKEM BACU016188/1-449 PMGSGKSLQA ALLAQKYGLV NVCCGQLLKE AMADKSKYGE MIRPFFEKEM ENSTTRP00000013623/1-451 PVGSGKSRQA ALLAQKYGLV NVCCGQLLKE AMADKSKYGE MIQPFFEKET ENSBTAP00000005345/1-479 PVGSGKSLQA ALLAQKYGLI NVCCGQLLKE AVADKSKYSD LIQPFFEKEI 401 450 bmy_05375T0/1-270 A-GDSAKFPV SYKGL----- ISGLWRRC-- -RENQSARLA GRAREPPGR- ENSP00000298545/1-479 AVPDSLLMKV LSQRLDQQDC IQKGWVLHGV PRDLDQAHLL NRLGYNPNRV BACU016188/1-449 AVPDNIIMKV LRQRLDQQDC VERGWVLHGF PRDRDQACLM DGLGYKPNR- ENSTTRP00000013623/1-451 AVPSYVIMKV LKQRLDQQDC VERGWVLHDF PRDRDQACLM DSMGYKPNRV ENSBTAP00000005345/1-479 AVPDNIIMKV LKQRLDQQDC VERGWVLHGF PRDLDQAHLM DNLGYKPNRV 451 500 bmy_05375T0/1-270 ---------- ---------D GKRGQTEPGS SAWPPRMTAA GSFWKPA--- ENSP00000298545/1-479 FFLNVPFDSI MERLTLRRID PVTGERYHLM YKPPPTMEIQ ARLLQNPKDA BACU016188/1-449 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013623/1-451 FFLNVPYDSI IERLTLRRTD PVTGERYHLM YKPPPTMEIQ ARLLQNPKDS ENSBTAP00000005345/1-479 FFLNVPFDSV IERLSLRRTD PITGERYHLM YKPPPTIEVQ ARLLQNPKDS 501 550 bmy_05375T0/1-270 ---------- ---------- LLASGIGVSG AGADLGV--- ---GINHITP ENSP00000298545/1-479 EEQVKLKMDL FYRNSADLEQ LYGSAITLNG DQDPYTVFEY IESGIINPLP BACU016188/1-449 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013623/1-451 EEQIRLRMEQ FYRNSAELHE FYGQAITLNG DQDPYTVFEY IESGIINPLP ENSBTAP00000005345/1-479 EEQIKLKMDL FYRNSAELEQ FYGDAITLNG DQDPYTVFEY IESGIINRLP 551 600 bmy_05375T0/1-270 EF-- ENSP00000298545/1-479 KKIP BACU016188/1-449 ---- ENSTTRP00000013623/1-451 KKVP ENSBTAP00000005345/1-479 KKVP