KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:21 2014 Check: 00 .. Name: ENSTTRP00000014560/1-319 Len: 370 Check: 3048 Weight: 1.00 Name: ENSP00000344729/1-317 Len: 370 Check: 7367 Weight: 1.00 Name: ENSBTAP00000005347/1-320 Len: 370 Check: 1535 Weight: 1.00 Name: bmy_13882T0/1-369 Len: 370 Check: 757 Weight: 1.00 Name: BACU009820/1-320 Len: 370 Check: 6355 Weight: 1.00 // 1 50 ENSTTRP00000014560/1-319 MTATQKHNLF PPEPHYIPGY AGFYPQLRYQ VGNTYGRTTA QLLADASVPK ENSP00000344729/1-317 MTTTQKHDLF TPEPHYVPGY AGFFPQLRYQ VGNTYGRTTG QLLTDPSVQK ENSBTAP00000005347/1-320 MTAPQKHNLF SPEPHYIPGY AGFYPQLRYR VGDTYGRTTA QLLTDPSVQK bmy_13882T0/1-369 MTATRKHNLF SPEPHYIPGY AGFYPQLRYQ VGNTYGRTTA QLLTDASVQK BACU009820/1-320 MTATQKHNLF SPEPHYIPGY AGFYPQLRYQ VGNTYGRTTA QLLTDASVQK 51 100 ENSTTRP00000014560/1-319 SPCSVLSPIA KPKSIEDFSK SQPPFTPCRE LTEPYVCQY- ---------- ENSP00000344729/1-317 SPCSVLSPMS KPKFIEDFSQ SKPPRVPCQD LTEPYIPHY- ---------- ENSBTAP00000005347/1-320 SPCSVLAPVA KPKFIEDFSK PKPPFVPCRD LIEPYIPHY- ---------- bmy_13882T0/1-369 SPCSVLSPIA KPKFIEDFSK SKPPFMPCRE LTEPYVSQYT SKPPPTHRPC BACU009820/1-320 SPCSVLSPIA TPKFIEDFSK SKPPFTPCHE LTEPYVPQY- ---------- 101 150 ENSTTRP00000014560/1-319 ---------- -------TSL KPYKNCEILG RFPPQEVDAQ GPPGGENVSR ENSP00000344729/1-317 ---------- -------TSL KPSKNFEILG QLPPLEVDAQ EPPGVENIPR ENSBTAP00000005347/1-320 ---------- -------TGL KPYKNFEMLG RFPPQEADAQ GSLGGENVSR bmy_13882T0/1-369 SPGDAPVPAV AQGCPVHTGL KPYKNSEILG QFPPQEVDAQ GPLGGENVSR BACU009820/1-320 ---------- -------TSL KPYKNSEILG QFPPQEVDAQ GPLGGENVSR 151 200 ENSTTRP00000014560/1-319 QVPLPAGFVP YPLYPPCPPG RKGDSRDLGH PGLRLALGEE AWMSATSARE ENSP00000344729/1-317 QILLPAGFTP DTPHPPCPPG RKGDSRDLGH P----VYGEE AWKSATPVCE ENSBTAP00000005347/1-320 QVPLPAGFMP YPPYAPCPPG RKGDSRDLGH PGLRLALGEE AWKSTAPACE bmy_13882T0/1-369 QVPLPAGFMP YPPYSPCPSG RKGDSRDLGH PGLRLALGEE AWKSATPARE BACU009820/1-320 QVPLPAGFMP YPPYSPCPSG RKGDSRDLGH PGLRLALGEE AWKSATPARE 201 250 ENSTTRP00000014560/1-319 APTQYQLCPC MREDCLAPA- HQRETLRVGC FHRPPQMDHP DLIQRKAISX ENSP00000344729/1-317 APRQHQLYHC QRDEYPPPAR RQQETLDVGS FQRLPQLDHP NLIQRKAISG ENSBTAP00000005347/1-320 APGQYQLYHC RRDESPPLA- HWQETLDVGR FHRLPQLGHP KLIQRKAISG bmy_13882T0/1-369 APTRYQLCPC KREECPPPA- HQQETLRVGS FHRLPQLDHP NLIQRKAISG BACU009820/1-320 APTRYQLCPC RREGCPPPV- HQQETLHVGS FHRLPQLDHP NLIQRKAISG 251 300 ENSTTRP00000014560/1-319 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ---------- ----XXXXXX ENSP00000344729/1-317 YAGFIPRFTW VMGLNYRDGV MQAMDEFDKS ---------- ----QFLFRN ENSBTAP00000005347/1-320 YAGFVPRFAW VMGMNYRDGV TQAMDEFDKS ---------- ----QFLLRN bmy_13882T0/1-369 YAGFVPRFAW VIGMNFRDGV AQATDEFDKS QLGAAAHGSA CLFPQFLLRN BACU009820/1-320 YAGFVPRFAW VIGMNFRDGV AQAADEFNKS ---------- ----QFLLRN 301 350 ENSTTRP00000014560/1-319 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXX------ --MQDNYALT ENSP00000344729/1-317 PHCDLGEKLP GTHWPSNHIY SSQGLIPFYM GFIPA----- --MQDNYALT ENSBTAP00000005347/1-320 PICALGERLP STHWPSNTIY RSQGLIPFYM GFIPS----- --MQDNYALT bmy_13882T0/1-369 PIRAPGERLP RAQWPSNTIY RSQGLIPFYM GFIPSAVVPL AATQDNYALT BACU009820/1-320 PIRAPGERLP RAQWPSNTIY RSQGLMPFYM GFIPS----- --TQDNYALT 351 400 ENSTTRP00000014560/1-319 FGNSTRKACQ KELERRSQTL ENSP00000344729/1-317 FGNSTRRAYW KEWAKRNHTL ENSBTAP00000005347/1-320 FGNSTRKAYQ KELERRSRTL bmy_13882T0/1-369 FGNSTRKAYQ KELERRSQTL BACU009820/1-320 VGKSTRKAYQ KELERRSQTL