KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:22 2014 Check: 00 .. Name: ENSP00000414856/1-664 Len: 687 Check: 2945 Weight: 1.00 Name: ENSBTAP00000005348/1-654 Len: 687 Check: 7701 Weight: 1.00 Name: ENSTTRP00000003962/1-648 Len: 687 Check: 1813 Weight: 1.00 Name: bmy_13440T0/1-569 Len: 687 Check: 7115 Weight: 1.00 Name: BACU010634/1-647 Len: 687 Check: 3212 Weight: 1.00 // 1 50 ENSP00000414856/1-664 MKTGLFFLCL LGTAAAIPTN ARLLSDHSKP TAET------ ----VAPDNT ENSBTAP00000005348/1-654 MKTVVFFLCI LGTAGAIPTQ ARFLSDHSNP TADSLSFFQE A---ETSEHT ENSTTRP00000003962/1-648 MKSVIFFLFI LETAVAIPTQ ARFLSDHSNP TAET------ ----VTSEHT bmy_13440T0/1-569 MVRRIHTDF- ------QRTQ ARFLSDHSNP TADSLSSFQQ AEMLVTSEHT BACU010634/1-647 ---------- --------TQ ARLLSDHSNP TADSLSSFQQ AEMLVTSEHT 51 100 ENSP00000414856/1-664 AIPSLRAEAE ENEKETAVST EDDSHHKAEK SSVLKSKEES HEQSAEQGKS ENSBTAP00000005348/1-654 AIPLVEVEDA ENEKETATSI EDHSHHKPEK SSLLKSEEEN HDQSADQEES ENSTTRP00000003962/1-648 AIPTVRAEDA EN--ETEVSI EDHPTHKPEK SSVLKSEEEN HDQSADQDQS bmy_13440T0/1-569 AIPIVRAEDA ENEKETEVSI EDHPTHKPEK SSVLKSEEEN HDPSADQDQS BACU010634/1-647 AIPIVRTEDA ENEKETEVSI EDHPTHKPEK SSVLKSEEEN HDPSADQDQS 101 150 ENSP00000414856/1-664 SSQELGLKDQ EDSDGHLSVN LEYAPTEGTL DIKEDMSEPQ EKKLSENTDF ENSBTAP00000005348/1-654 YNQNLGLQDQ EKTESDLTEN LEYSPTEGTL ELKEDMSEPQ KEKLPE--SF ENSTTRP00000003962/1-648 YSQHLGLQDQ EKSESDLIEN LEYTPTEGTL DLKEDMSEPP KEKLPE--DS bmy_13440T0/1-569 YSQNLGLQDQ EKSESDLTEN LEYTPTEGTL DLKEDMSEPP KEKLPE--RF BACU010634/1-647 YSQNLGLQDQ EKSESDLTEN LEYTPTEGTL DLKEDMSEPP KEKLPE--GF 151 200 ENSP00000414856/1-664 LAPGVSSFTD SNQQESITKR EENQEQPRNY SHHQLNRSSK HSQGLRDQGN ENSBTAP00000005348/1-654 LAHDVSSIVD SNQQESITKT EENQKQPVDD SHPQLN---- -SQDLRDQGN ENSTTRP00000003962/1-648 L-HDVSPTVD SNQQESITET EENQEQPIND SHPQLNGSSK QSQDLSVQGN bmy_13440T0/1-569 LGHDVSSIVD SNQQESITET EENQEQPIND SHPQLNRSSK HSQDLSVQGN BACU010634/1-647 LGHDVSSIVD SNQQESITET EENQEQPIND SHPQLNRSSK RSQDLSVQGN 201 250 ENSP00000414856/1-664 QEQDPNISNG EEEEEKEPGE VGTHNDNQER KTELPREHAN SKQEEDNTQS ENSBTAP00000005348/1-654 QDQD---TNG EEEGEKEPGE VGTHNDEEER ETELPKEPSN NKQEEDSTQS ENSTTRP00000003962/1-648 QEQGPNIPNG DEE---EPGK IGTHNDNQER EREVPEQHST SNQEEDSTQS bmy_13440T0/1-569 QEQDPNIPNG EEEGEKEPGK VGTHNDNQER EREVPKEHSN SKQEEDSTQS BACU010634/1-647 QEQDPNIPNG EEEGEKEPGK VGTHNDNQER EREVPKEHSN SKQEEDSTQS 251 300 ENSP00000414856/1-664 DDILEESDQP TQVSKMQEDE FDQGNQEQ-E DNSNAEMEEE NASNVNKHIQ ENSBTAP00000005348/1-654 DAVLEESYQP TQESKMQKEE LEHGSREQEE ENTNAEMEEE TASKIDKPSQ ENSTTRP00000003962/1-648 DGILEESYQP TQVSKMQKDE FEQGGQEQEE ENSNAEMEEE TASKISKPNQ bmy_13440T0/1-569 DDILEESYQP TQVSTMQKDE FEQGGQEXEE ENSNAETEEE TASKISKPNQ BACU010634/1-647 DDILEESYQP TQVSTMQKDE SEQGGQEQEE ENSNAETEEE TASKISKPNQ 301 350 ENSP00000414856/1-664 ETEWQSQEGK TGLEAISNHK ETEEKTVSEA LLMEPTDDGN TTPRNHGVDD ENSBTAP00000005348/1-654 DTEWQSQEGK PGPEVISNHE EMDKKTLSEP LLVEPTDDVN EVAINHGAKD ENSTTRP00000003962/1-648 DKEWQSREAQ PGLEVISNHE EMDKKTLSEP LLVEPT-DGN IMPGNHGTDD bmy_13440T0/1-569 DKEWQSQEGK PGLEVISNHE EMDKKTLSEP LLVEPTDDGN IMPRNHGTDD BACU010634/1-647 DKEWQSQEGK PGLEVVSNHE EMDKETLSEP LLVEPTDDGN ITPRNHGADD 351 400 ENSP00000414856/1-664 DGDDDGDDGG TDGPRHSASD DYFIPSQAFL EAERAQSIAY HLKIEEQREK ENSBTAP00000005348/1-654 DSD------- -DGPGYNESE DDFTPSEEFL SNERAQSMYY HLEYEEQIEN ENSTTRP00000003962/1-648 DGD------- -DGPRHNASE EYFNPSEAFL ENERAQSNYY HINYEEQREK bmy_13440T0/1-569 DGD------- -DGPRHNASE EYSVPSEAFL ENERAQPNYY HIKYEEQREE BACU010634/1-647 DGD------- -DGPRHNASE EYSIPSEAFL ENERAQPNYH HVKYEEQREE 401 450 ENSP00000414856/1-664 VHENENIGTT EPGEHQEAKK AENSSNEEET SSEGNMRVHA VDSCMSFQCK ENSBTAP00000005348/1-654 ALKNENVDSS ETVENQQAKK AESSLKEDEH STEGNTRVHS VDSCLSFQCK ENSTTRP00000003962/1-648 ARENENVDTS EPVENRGAKK AESSLNEDDR STEGNTRVHS VDSCMSFQCK bmy_13440T0/1-569 AHENENVDTS EPVENRGAEK PESSPNEDDS STEGNTRVHS VDSCMSFQCK BACU010634/1-647 AHENENVDTS EPVENRGAEK AESSPNEDDS STEGNTRVHG VDSCMSFQCK 451 500 ENSP00000414856/1-664 RGHICKADQQ GKPHCVCQDP VTCPPTKPLD QVCGTDNQTY ASSCHLFATK ENSBTAP00000005348/1-654 RGHICKADQH GKPYCVCQDP ASCPPTKLLD QVCGTDNQTY ASSCHLFATK ENSTTRP00000003962/1-648 RGHVCKTDQQ GKPHCACQDP ATCPPTKLLD QVCGTDNQTY ASSCHLFATK bmy_13440T0/1-569 RGHVCKADQQ GKPHCVCQDP VTCPPTKLLD QACGTDNQTY ASSCHLFATK BACU010634/1-647 RGHVCKADQQ GKPHCVCQDP VTCPPTKLLD QVCGTDNQTY ASSCHLFATK 501 550 ENSP00000414856/1-664 CRLEGTKKGH QLQLDYFGAC K--------- ---SIPTCTD FEVIQFPLRM ENSBTAP00000005348/1-654 CRMERTKKGH QLHLDYFGAC K--------- ---TIPACTD FEVTQFPLRM ENSTTRP00000003962/1-648 CRLEGTKKGH QLQLDYFGAC K--------- ---SIPACTD FEVNQFPLRM bmy_13440T0/1-569 CRLEGTKKGH QLQLDYFGAC KCKSPTTTAE SVLAIPACTD FEVTQFPLRM BACU010634/1-647 CRLEGTKKGH QLQLDYFGAC K--------- ---SIPVCTD FEVTQFPLRM 551 600 ENSP00000414856/1-664 RDWLKNILMQ LYEANSEHAG YLNEKQRNKV KKIYLDEKRL LAGDHPIDLL ENSBTAP00000005348/1-654 RDWLKNILVQ LYEPNPEHSG YLNEKQRNKV KKIYLDEKRL LAGDHSIDLL ENSTTRP00000003962/1-648 RDWLKNILMQ LYEPNPEHAG YLNEKQRNKV KKIYLDEKRL LAGDHSLDLL bmy_13440T0/1-569 RDWLKNILMQ LYEPNPEHAG YLNEKQRNKA R--------- ---------- BACU010634/1-647 RDWLKNILMQ LYEPNPEHAG YLNEKQRNKV KKIYLDEKRL LAGDHSIDLL 601 650 ENSP00000414856/1-664 LRDFKKNYHM YVYPVHWQFS ELDQHPMDRV LTHSELAPLR ASLVPMEHCI ENSBTAP00000005348/1-654 LRDFKKNYHM YVYPVHWQFS ELDQHPRDRV LTHSELAPLR ASLVPMEHCI ENSTTRP00000003962/1-648 LRDFKKNYHM YVYPVHWQFS ELDQHPRDRV LTHSELAPLR ASLVPLEHCI bmy_13440T0/1-569 ---------- ---------- ---------- ---------- ---------- BACU010634/1-647 LRDFKKNYHM YVYPVHWQFS ELDQHPRDRV LTHSELAPLR ASLVPLEHCI 651 700 ENSP00000414856/1-664 TRFFEECDPN KDKHITLKEW GHCFGIKEED IDENLLF ENSBTAP00000005348/1-654 TRFFEECDPN KDKHITLQEW GHCFEIKEED IDENLLF ENSTTRP00000003962/1-648 TRFFEECDPN KDKHITLEEW GHCFEIKEED IDENLLF bmy_13440T0/1-569 ---------- ---------- -HRFMI---- ------- BACU010634/1-647 TRFFEECDPN KDKHITLEEW GHCFEIKEED IDENLLF