KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:23 2014 Check: 00 .. Name: ENSP00000362547/1-1089 Len: 1092 Check: 471 Weight: 1.00 Name: ENSBTAP00000005359/1-1092 Len: 1092 Check: 4554 Weight: 1.00 Name: ENSTTRP00000015878/1-1092 Len: 1092 Check: 8738 Weight: 1.00 Name: bmy_15751T0/1-1045 Len: 1092 Check: 6191 Weight: 1.00 Name: BACU015509/1-1092 Len: 1092 Check: 1594 Weight: 1.00 // 1 50 ENSP00000362547/1-1089 MAVFDTPEEA FGVLRPVCVQ LTKTQTVENV EHLQTRLQAV SDSALQELQQ ENSBTAP00000005359/1-1092 MAVFDTPEEA FGVLRPVCVQ LTKTQTVENV ERLQAQLQAV SDSALQELQQ ENSTTRP00000015878/1-1092 MAVFDTPEEA FGILRPICVQ LTKTQTVENV ECLQAQLQVV SDSALQELQQ bmy_15751T0/1-1045 MAVFDTPEEA FGVLRPICVQ LTKTQTVENV ERLQAQLQVV SDSALQELQQ BACU015509/1-1092 MVVFDTPEEA FGVLRPICVQ LTKTQTVENV ERLQAQLQVV SDSALQELQQ 51 100 ENSP00000362547/1-1089 YILFPLRFTL KTPGPKRERL IQSVVECLTF VLSSTCVKEQ ELLQELFSEL ENSBTAP00000005359/1-1092 YILFPLRFTL KTPGPKRERL IQSVVECITF VLSSTCVKEQ ELLQELFSEL ENSTTRP00000015878/1-1092 YILFPLRFTL KTPGPKREHL IQSVVECITL VLSSTCVKEQ ELLQELFSEL bmy_15751T0/1-1045 YILFPLRFTL KTPGPKREHL IQSVVECITL VLSSTCVKEQ ELLQELFSEL BACU015509/1-1092 YILFPLRFTL KTPGPKREHL IQSVVECITL VLSSTCVKEQ ELLQELFSEL 101 150 ENSP00000362547/1-1089 SACLYSPSSQ KPAAVSEELK LAVIQGLSTL MHSAYGDIIL TFYEPSILPR ENSBTAP00000005359/1-1092 SACLYSPSSR KPAAVSEELK LAVIRGLGTL MHSAYGDILL NFYEPSILPR ENSTTRP00000015878/1-1092 SACLYSPNSQ KPAAVSEELK LAVIQGLSAL MHSAYGDIIL TIYEPSILPR bmy_15751T0/1-1045 SACLYSPNSQ KPAAVSEELK LAVIQGLSAL MHSAYGDIIL TIYEPSILPR BACU015509/1-1092 SACLYSPNSQ KPAAVSEELK LAVIQGLSAL MHSAYGDIIL TIYEPSILPR 151 200 ENSP00000362547/1-1089 LGFAVSLLLG LAEQEKSKQI KIAALKCLQV LLLQCDCQDH PRSLDELEQK ENSBTAP00000005359/1-1092 LGFAVSLLLG LAEQEKSKEI KMAALTCLQV LLFQCDCPDH PRTLDALQQK ENSTTRP00000015878/1-1092 LGFAVSLLLG LAEQEKSKQI KMAALKCLQV LLFQCECQDH PRSLDELEQK bmy_15751T0/1-1045 LGFAVSLLLG LAEQEKSKQI KMAALKCLQV LLFQCECQDH PRSLDELEQK BACU015509/1-1092 LGFAVSLLLG LAEQEKSKQI KMAALKCLQV LLFQCECQDH PRSLDELEQK 201 250 ENSP00000362547/1-1089 QLGDLFASFL PGISTALTRL ITGDFKQGHS IVVSSLKIFY KTVSFIMADE ENSBTAP00000005359/1-1092 QLGDLFASFL PGLSTTLTRV ITGDFKQGHS IVVSSLKVFY KTVSFIMADD ENSTTRP00000015878/1-1092 QLGDLFASFL PGLSTTLTRI ITGDFKQGHS IVVSSLKVFY KTVSFIMADE bmy_15751T0/1-1045 QLGDLFASFL PGLSTTLTRV ITGDFKQGHS IVVSSLKVFY KTVSFIMADE BACU015509/1-1092 QLGDLFASFL PGLSTTLTRV ITGDFKQGHS IVVSSLKVFY KTVSFIMADE 251 300 ENSP00000362547/1-1089 QLKRISKVQA KPAVEHRVAE LMVYREADWV KKTGDKLTIL IKKIIECVSV ENSBTAP00000005359/1-1092 QLGRVSEVQA KSAVERRVAE LMVHREASWV KNTGDKLTIL IKKITECISV ENSTTRP00000015878/1-1092 QLRRVSEVRE KPAVEHRVAE LLVHREANWV KNTGDRLTVL IKKITECVSV bmy_15751T0/1-1045 QLRRVSEVRA KPAVEHRVAE LLVHREANWV KNTGDRLTVL IKKIIECVSV BACU015509/1-1092 QLRRVSEVRA KPAVEHRVAE LLVHREANWV KNTGDRLTVL IKKIIECVSV 301 350 ENSP00000362547/1-1089 HPHWKVRLEL VELVEDLLLK CSQSLVECAG PLLKALVGLV NDESPEIQAQ ENSBTAP00000005359/1-1092 HPHWKVRLEL IDFVEALLLK CSRSLIESAG PLLKALVSLT NDESPDVQAQ ENSTTRP00000015878/1-1092 HPHWKVRLEV IDFVEALLLK CSQSLVESAG PLLKALVSLV NDESRDVQAQ bmy_15751T0/1-1045 YPHWKVRLEL IDFVEALLLK CSKSLVESAG PLLKALVSLV NDESPDVQAQ BACU015509/1-1092 YPHWKVRLEL IDFVEALLLK CSQSLVESAG PLLKALVSLV NDESPDVQAQ 351 400 ENSP00000362547/1-1089 CNKVLRHFAD QKVVVGNKAL ADILSESLHS LATSLPRLMN SQDDQGKFST ENSBTAP00000005359/1-1092 CDKALRRFAD EKVVVGSRAF ADILSENLHS LATSLPRLMS SQDDQGRFST ENSTTRP00000015878/1-1092 CSKILRRFAD EKVVVGSRAF ADILSENLHS LATSLPRLMN SQDDQGRLST bmy_15751T0/1-1045 CNKILRRFAD EKVVVGSRAF ADILSENLHS LATSLPRLMN SQDDQGRFST BACU015509/1-1092 CNKILRRFAD EKVVVGSRAF ADILSENLHS LATSLPRLMN SQDDQGRFST 401 450 ENSP00000362547/1-1089 LSLLLGYLKL LGPKINFVLN SVAHLQRLSK ALIQVLELDV ADIKIVEERR ENSBTAP00000005359/1-1092 LSLLLGYLKL LGPKVDFVLN SVAHLQRLSK ALIQVLELDV ADVKIVEERR ENSTTRP00000015878/1-1092 LSLLLGYLKL LGPKVNFVLN SVAHLQRLSK ALIQVLELDV TDVKIVEERH bmy_15751T0/1-1045 LSLLLGYLKL LGPKVNFVLN SVAHLQRLSK ALIQVLELDV TDIKIVEERH BACU015509/1-1092 LSLLLGYLKL LGPKVNFVLN SVAHLQRLSK ALIQVLELDV TDIKIVEERH 451 500 ENSP00000362547/1-1089 WNSDDLNASP KTSATQPWNR IQRRYFRFFT DERIFMLLRQ VCQLLGYYGN ENSBTAP00000005359/1-1092 WNSEHLSASS EAPAARPWAQ MQRRYFRFFT DERVFLLLRQ VCQLLGFYGN ENSTTRP00000015878/1-1092 WNSEHLSTSP ETSASRPWAQ MQRRYFRFFN DERVFLLLRQ VCQLLGFYGN bmy_15751T0/1-1045 WNSEHLSTSP ETSASQPWAQ MQRRYFRFFT DERVFLLLRQ VCQLLGFYGN BACU015509/1-1092 WNSEHLSTSP ETSASRPWAQ MQRRYFRFFT DERVFLLLRQ VCQLLGFYGN 501 550 ENSP00000362547/1-1089 LYLLVDHFME LYHQSVVYRK QAAMILNELV TGAAGLEVED LHEKHIKTNP ENSBTAP00000005359/1-1092 LYLLVDHFME LYHESMVYRK QAAMILNELV VGAAGLGVEN LHEKHTPADL ENSTTRP00000015878/1-1092 LYLLVDPFME LYHESVVYRK QAAMILNELV VGAAGLGVEN VHEKHIKTNP bmy_15751T0/1-1045 LYLLVDHFME LYHESVVYRK QAAMILNELV VGAAGLGVEN LHEKHIKTNP BACU015509/1-1092 LYLLVDHFME LYHESVVYRK QAAMILNELV VGAAGLGVEN LHEKHIKTNS 551 600 ENSP00000362547/1-1089 EELREIVTSI LEEYTSQENW YLVTCLETEE MGEELMMEHP GLQAITSGEH ENSBTAP00000005359/1-1092 QELREIVTSI LEVYTSQENW YLVTCVEAEE AGEEPTMRWT GLQALASGPH ENSTTRP00000015878/1-1092 EELREIVTSI LEEYTSQENW YLVTCLEAEE VGEELTMMQS GIQALTSGAH bmy_15751T0/1-1045 EELREIVTSI LEEYTSQENW YLVTCLEAEE VGEELTMMRS GLQALASGAH BACU015509/1-1092 EELREIVTSI LEEYTSQENW YLVTCLEAEE VGEELTMMRS GLQALASGAH 601 650 ENSP00000362547/1-1089 TCQVTSFLAF SKPSPTICSM NSNIWQICIQ LEGIGQFAYA LGKDFCLLLM ENSBTAP00000005359/1-1092 TCPPTSFPEF SKPSPTVCSM NSNIWQICIQ LEGIGHFAHA LGKDFRLLLM ENSTTRP00000015878/1-1092 TCRATSSPTF SKPSPTICSL NSNIWQICIQ LEGIGHFAHA LGKDFRLLLM bmy_15751T0/1-1045 TCQATSPPTF SKPSPTICSM NSNIWQICIQ LEGIGHFAHA LGIDFRLLLM BACU015509/1-1092 TCQATSPPTF SKPSPTICSM NSNIWQICIQ LEGTGHFAHA LGKDFRLLLM 651 700 ENSP00000362547/1-1089 SALYPVLEKA GDQTLLISQV ATSTMMDVCR ACGYDSLQHL INQNSDYLVN ENSBTAP00000005359/1-1092 SALYPVLEKA GDQTLLISQA AIGTMTDICQ ACGYDSLQHL INENSDYLVN ENSTTRP00000015878/1-1092 SALYPVLEKA GDQTLLISQA AISTMMDICQ ACGYDSLQQL INQNSDYLVN bmy_15751T0/1-1045 SALYPVLEKA GDQTLLISQA AISAMMDICQ ACGYDSLQQL INQNSDYLVN BACU015509/1-1092 SALYPVLEKA GDQTLLISQA AISAMMDICQ ACGYDSLQQL INQNSDYLVN 701 750 ENSP00000362547/1-1089 GISLNLRHLA LHPHTPKVLE VMLRNSDANL LPLVADVVQD VLATLDQFYD ENSBTAP00000005359/1-1092 GISLNLRHLS LHPHTPKVLE VMLQNSDSSL LPLVADVVQD VLATLDQFYD ENSTTRP00000015878/1-1092 GISLNLRHLS LHPHTPKVLE VMLQNSDASL LPLVADVVQD VLATLDQFYD bmy_15751T0/1-1045 GISLNLRHLS LHPHTPKVLE VMLQNSDASL LPLVADVVQD VLTTLDQFYD BACU015509/1-1092 GISLNLRHLS LHPHTPKVLE VMLQNSDASL LPLVADVVQD VLTTLDQFYD 751 800 ENSP00000362547/1-1089 KRAASFVSVL HALMAALAQW FPDTGNLGHL QEQSLGEEGS HLNQRPAALE ENSBTAP00000005359/1-1092 KKAATFVSVL HALMAALVQW FPDAGHLGQL QEQSVGEEGS PLSQRPASLE ENSTTRP00000015878/1-1092 KRTTSFVSVL HALLTALAQW FPDAGHLGQL QEQSVGEEGS HLSQRPASPE bmy_15751T0/1-1045 KRTTSFVSVL HALLAALAQW FPDTGHLGQL QEQSVGEEGS HLSQRPASLE BACU015509/1-1092 KRTTSFVSVL HALLAALAQW FPDTGHLGQL QEQSVGEEGS HVSQRPASLE 801 850 ENSP00000362547/1-1089 K---STTTAE DIEQFLLNYL KEKDVADGNV SDFDNEEEEQ SVPPKVDEND ENSBTAP00000005359/1-1092 KGLENPTTAE DIEQFVLNYL KEKDVAAGNV SDLDNEDEEQ SDPPEVEGDD ENSTTRP00000015878/1-1092 KGLENTTTAE DIEQFVLNYL KEKDVADGNV SGFDNEEEEQ SDPPEVDEND bmy_15751T0/1-1045 KGLENTTTAE DIEQFVLNYL KEKDVADGNV SDFDNEEEEQ SDPPEVDEND BACU015509/1-1092 KGLENTTTAE DIEQFVLNYL KEKDVADGNV SDFDNEEEEQ SDPPEVDEND 851 900 ENSP00000362547/1-1089 TRPDVEPPLP LQIQIAMDVM ERCIHLLSDK NLQIRLKVLD VLDLCVVVLQ ENSBTAP00000005359/1-1092 TGPHVEPPLP VQIQIATDVM ERCVHLMSDK SLKMRLKVLN VLDLCVVVLQ ENSTTRP00000015878/1-1092 TDPSVQPPLP VQIQIATDVM ERCIHLMSDK NLKIRLKVLD VLDLCVVVLQ bmy_15751T0/1-1045 TDPSVQPPLP VQIQIATDVM ERCIHLMSDR NLKIRLKVLD VLDLCVVVLQ BACU015509/1-1092 TDPGVPPPLP VQIQIATDVM ERCIHLMSDK SLKIRLKVLD VLDLCVVVLQ 901 950 ENSP00000362547/1-1089 SHKNQLLPLA HQAWPSLVHR LTRDAPLAVL RAFKVLRTLG SKCGDFLRSR ENSBTAP00000005359/1-1092 SHKNQLLPLA HRAWPSLVHR LTNDDPLAVL RAFKVLRTLG GKCGDFLRSR ENSTTRP00000015878/1-1092 SHKNQLLPLA HRAWPSLVHR LTNDDPLAVL RAFKXXXXXX XXXXXXXXXX bmy_15751T0/1-1045 SHKNQLLPLA HRAWPSLVHR LTNDDPLAVL RAFKVLRTLG GKCGDFLRSR BACU015509/1-1092 SHKNQLLPLA HRAWPSLVHR LTNDDPLAVL RAFKVLRTLG GKCGDFLRSR 951 1000 ENSP00000362547/1-1089 FCKDVLPKLA GSLVTQAPIS ARAGPVYSHT LAFKLQLAVL QGLGPLCERL ENSBTAP00000005359/1-1092 FCKDVLPKLA GSLVSQAPVS ARAGPVYSHT LAFKLQLAVL QGLGPLCERL ENSTTRP00000015878/1-1092 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15751T0/1-1045 FCKDVLPKLA GSLVSQAPVS ARAGPVYFHT LAFKLQLAVL QGLGPLCERL BACU015509/1-1092 FCKDVLPKLA GSLVSQAPIS ARAGPVYFHT LAFKLQLAVL QGLGPLCERL 1001 1050 ENSP00000362547/1-1089 DLGEGDLNKV ADACLIYLSV KQPVKLQEAA RSVFLHLMKV DPDSTWFLLN ENSBTAP00000005359/1-1092 DLGEGDLSKV ADACLIYLSA KQPVKLQEAA RSVFLHLMKV DPDSTWFLLN ENSTTRP00000015878/1-1092 XXXEGDLNKV ADACLIYLSA KQPVKLQEAA RSLFLHLMKA DPDSTWLLLN bmy_15751T0/1-1045 DLGEGDLNKV ADACLIYLSA KQPVKLQEAA RR-------- ---------- BACU015509/1-1092 DLGEGDLNKV ADACLIYLSA KQPVKLQEAA RSLFLHLMKV DPDSTWLLLN 1051 1100 ENSP00000362547/1-1089 ELYCPVQFTP PHPSLHPVQL HGASGQQNPY TTNVLQLLKE LQ ENSBTAP00000005359/1-1092 ELYCPEEFTP PHPSLHPVQL RGATRQQNPY SANVLLLLPE LQ ENSTTRP00000015878/1-1092 ELYCPQEFTP PHPSLHPVQL RGATGQQNPY TANVLRLLQE LQ bmy_15751T0/1-1045 ---------- ---------- ---------Y VCLITRISLR LS BACU015509/1-1092 ELYCPQEFTP PHPSLHPVQL RGATGQQNPY AANVLRLLQE LQ