KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:24 2014 Check: 00 .. Name: BACU004229/1-242 Len: 315 Check: 7152 Weight: 1.00 Name: ENSP00000403536/1-269 Len: 315 Check: 5633 Weight: 1.00 Name: ENSBTAP00000005375/1-236 Len: 315 Check: 5311 Weight: 1.00 Name: bmy_06670T0/1-204 Len: 315 Check: 8346 Weight: 1.00 Name: ENSTTRP00000011195/1-175 Len: 315 Check: 1528 Weight: 1.00 // 1 50 BACU004229/1-242 ---------- ---------- ---------- ---------- ---------- ENSP00000403536/1-269 MSAPSATPIF APGENCSPAW GAAPAAYDAA DTHLRILGKP VMERWETPYM ENSBTAP00000005375/1-236 MSAPAATPIF APGENCSPAW RAAPAAYDAS DTHLQILGKP VMERWETPYM bmy_06670T0/1-204 MSAPAATPIF APGENCSPAW RAAPAAYDAS DSHLQILGKP VMERWETPYM ENSTTRP00000011195/1-175 ---------- ---------- ---------- ---------- ---------- 51 100 BACU004229/1-242 ---------- -MAALEAGFG PAMAATKVQE APIDEHWIVE CNDGVFQRLQ ENSP00000403536/1-269 HALAAAASSK GGRVLEVGFG MAIAASKVQE APIDEHWIIE CNDGVFQRLR ENSBTAP00000005375/1-236 HALAAAAASR GGRVLEVGFG MAIAATKVQE APIEEHWIIE CNEGVFQRLQ bmy_06670T0/1-204 HALAAAAASR GGRVLEVGFG MAIAATKVQE APIDEHWIVE CNEGVFQRLQ ENSTTRP00000011195/1-175 ---------- -GRVLEVGFG MAIAATKVQE APIDEHWVIE CNEGVFQRLQ 101 150 BACU004229/1-242 DSAQRPPRKV VPSKGLWEKV APTLPDSHFD GILYDTYLLS EGTWHTHQFS ENSP00000403536/1-269 DWAPRQTHKV IPLKGLWEDV APTLPDGHFD GILYDTYPLS EETWHTHQFN ENSBTAP00000005375/1-236 DWALQQPHKV VPLKGLWEEV APTLPDSHFD GILYDTYPLS EETWHTHQFN bmy_06670T0/1-204 DWAPRQLHKV VPLKGLWEEV APTLPDSHFD GILYDTYPLS EETWHTHQFN ENSTTRP00000011195/1-175 DWAPRQPHKV VPLKGLWEEV APTLPDSHFD GILYDTYPLS EETWHTHQFN 151 200 BACU004229/1-242 LVRDHALPPA EARERPHLLQ PHLLGERMKS KYYSGVTTVF QETQVSALL- ENSP00000403536/1-269 FIKNHAFRLL KPGGVLTYCN LTSWGELMKS K-YSDITIMF -EVRPPEVPH ENSBTAP00000005375/1-236 FIRDHAFRLL KPGGVLTYCN LTSWGELMKT K-YSDITTMF EETQVPALL- bmy_06670T0/1-204 FIRVGSLA-- ---------- ---------- ---------- -ETQVPALL- ENSTTRP00000011195/1-175 FIKDHAFRLL KPGGILTYCN LTSWGKLMKS K-YSDITTMF EETQVPALL- 201 250 BACU004229/1-242 -----KAGFR RENILTQVTA DYRSHPFRWM TTPGHQALRP LGPPAQRPQS ENSP00000403536/1-269 GSPGSDLGWG WEGAAGAT-- ---------- ---------- LLPGEGPFLT ENSBTAP00000005375/1-236 -----EAGFR RDNIRTQVME ---------- ---------- LVPPAN---- bmy_06670T0/1-204 -----EAGFR PENIHTQVME ---------- ---------- LVPPAD---- ENSTTRP00000011195/1-175 -----EAGFR PENIHTQVME ---------- ---------- LVPPAD---- 251 300 BACU004229/1-242 PGDSGLQVLA TPTTLLSSLV AGSAGSGLSA RAQTHASCVT SASFPSLCNG ENSP00000403536/1-269 P--------- ---------- --WVGWTVLV HLEIKVLCLA QW-LPGAVAQ ENSBTAP00000005375/1-236 ---------- ---------- ---------- -------CRY YA-FPRMITP bmy_06670T0/1-204 ---------- ---------- ---------- -------CRY YA-FPQMITP ENSTTRP00000011195/1-175 ---------- ---------- ---------- -------CRY YA-FPQMITP 301 350 BACU004229/1-242 ITTTFLLGS- ----- ENSP00000403536/1-269 VYNPSTVEGR GGQIA ENSBTAP00000005375/1-236 LVTKH----- ----- bmy_06670T0/1-204 LVTKH----- ----- ENSTTRP00000011195/1-175 LVTKH----- -----