KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:25 2014 Check: 00 .. Name: ENSP00000309597/1-847 Len: 899 Check: 4129 Weight: 1.00 Name: ENSBTAP00000005378/1-864 Len: 899 Check: 9104 Weight: 1.00 Name: ENSTTRP00000002142/1-735 Len: 899 Check: 2593 Weight: 1.00 Name: bmy_10225T0/1-867 Len: 899 Check: 7486 Weight: 1.00 Name: BACU003479/1-722 Len: 899 Check: 1042 Weight: 1.00 // 1 50 ENSP00000309597/1-847 MEPLKSLFLK SPLGSWNGSG SGGGGGGGGG RPEGSPKAAG YANPVWTALF ENSBTAP00000005378/1-864 MEPLKNLFLK SPLGSWNSSG SGGGGGGGGG WPEGSPKAAA YANPVWTALF ENSTTRP00000002142/1-735 MEPLKNLFLK SPLGSWNSGG SGGSGGGGGG WPEGSPKAAA YANPVWTALF bmy_10225T0/1-867 MEPLKNLFLK SPLGSWNSGG SGGSGGGGGG WPEGSPKAAA YANPVWTALF BACU003479/1-722 MEPLKNLFLK SPLGSWNSGG SGGSGGGSGG WPEGSPKAAA YANPVWTALF 51 100 ENSP00000309597/1-847 DYEPSGQDEL ALRKGDRVEV LSRDAAISGD EGWWAGQVGG QVGIFPSNYV ENSBTAP00000005378/1-864 DYEPSGQDEL ALRKGDRVEV LSRDAAISGD EGWWAGQVGG QVGIFPSNYV ENSTTRP00000002142/1-735 DYEPNGQDEL ALRKGDRVEV LSRDAAISGD EGWWAGQVGG QVGIFPSNYV bmy_10225T0/1-867 DYEPNGQDEL ALRKGDRVEV LSRDAAISGD EGWWAGQVGG QVGIFPSNYV BACU003479/1-722 DYEPNGQDEL ALRKGDRVEV LSRDAAISGD EGWWAGQVGG QVGIFPSNYV 101 150 ENSP00000309597/1-847 SRGGGPPPCE VASFQELRLE EVIGIGGFGK VYRGSWRGEL VAVKAARQDP ENSBTAP00000005378/1-864 SRGGGPPPCE MASFQELRLE EVIGIGGFGK VYRGSWRGEL VAVKAARQDP ENSTTRP00000002142/1-735 SRGGGPPPCE MASFQELRLE EVIGIGGFGK VYRGSWRGEL VAVKAARQDP bmy_10225T0/1-867 SRGGGPPPCE MASFQELRLE EVIGIGGFGK VYRGSWRGEL VAVKAARQDP BACU003479/1-722 SRGGGPPPCE MASFQELRLE EVIGIGGFGK VYRGSWRGEL VAVKAARQDP 151 200 ENSP00000309597/1-847 DEDISVTAES VRQEARLFAM LAHPNIIALK AVCLEEPNLC LVMEYAAGGP ENSBTAP00000005378/1-864 DEDISVTTES VRQEARLFAM LAHPNIIALK AVCLEEPNLC LVMEYAAGGP ENSTTRP00000002142/1-735 DEDISVTAES VRQEARLFAM LAHPNIIALK AVCLEEPNLC LVMEYAAGGP bmy_10225T0/1-867 DEDISVTAES VRQEARLFAM LAHPNIIALK AVCLEEPNLC LVMEYAAGGP BACU003479/1-722 DEDISVTAES VRQEARLFAM LAHPNIIALK AVCLEEPNLC LVMEYAAGGP 201 250 ENSP00000309597/1-847 LSRALAGRRV PPHVLVNWAV QIARGMHYLH CEALVPVIHR DLKSNNILLL ENSBTAP00000005378/1-864 LSRALAGRRV PPHVLVNWAV QIARGMHYLH CEALVPVIHR DLKSNNILLL ENSTTRP00000002142/1-735 LSRALAGRRV PPHVLVNWAV QIARGMHYLH CEALVPVIHR DLKSNNILLL bmy_10225T0/1-867 LSRALAGRRV PPHVLVNWAV QIARGMHYLH CEALVPVIHR DLKSNN---- BACU003479/1-722 LSRALAGRRV PPHVLVNWAV QIARGMHYLH CEALVPVIHR DLKSNNILLL 251 300 ENSP00000309597/1-847 QPIESDDMEH KTLKITDFGL AREWHKTTQM SAAGTYAWMA PEVIKASTFS ENSBTAP00000005378/1-864 QPIEGDDMEH KTLKITDFGL AREWHKTTQM SAAGTYAWMA PEVIKASTFS ENSTTRP00000002142/1-735 QPIEGDDMEH KTLKITDFGL AREWHKTTQM SAAGTYAWMA PEVIKASTFS bmy_10225T0/1-867 ----SDDMEH KTLKITDFGL AREWHKTTQM SAAGTYAWMA PEVIKASTFS BACU003479/1-722 QPIEGDDMEH KTLKITDFGL AREWHKTTQM SAAGTYAWMA PEVIKASTFS 301 350 ENSP00000309597/1-847 KGSDVWSFGV LLWELLTGEV PYRGIDCLAV AYGVAVNKLT LPIPSTCPEP ENSBTAP00000005378/1-864 KGSDVWSFGV LLWELLTGEV PYRGIDCLAV AYGVAVNKLT LPIPSTCPEP ENSTTRP00000002142/1-735 KGSDVWSFGV LLWELLTGEV PYRGIDCLAV AYGVAVNKLT LPIPSTCPEP bmy_10225T0/1-867 KGSDVWSFGV LLWELLTGEV PYRGIDCLAV AYGVAVNKLT LPIPSTCPEP BACU003479/1-722 KGSDVWSFGV LLWELLTGEV PYRGIDCLAV AYGVAVNKLT LPIPSTCPEP 351 400 ENSP00000309597/1-847 FAQLMA---- ---------- ---------- ---------- -DCWAQDPHR ENSBTAP00000005378/1-864 FAQLMA---- ---------- ---------- ---------- -DCWAQDPHR ENSTTRP00000002142/1-735 FAQLMA---- ---------- ---------- ---------- -DCWAQDPHR bmy_10225T0/1-867 FAQLMAGKGM GQEGEGQSSL AQDIYTHRPL LILSPLHSVS PDCWAQDPHR BACU003479/1-722 FAQLMA---- ---------- ---------- ---------- -DCWAQDPHR 401 450 ENSP00000309597/1-847 RPDFASILQQ LEALEAQVLR EMPRDSFHSM QEGWKREIQG LFDELRAKEK ENSBTAP00000005378/1-864 RPDFASILQQ LEALEAQVLR EMPRDSFHSM QEGWKREIQG LFDELRAKEK ENSTTRP00000002142/1-735 RPDFASILQQ LEALEAQVLR EMPRDSFHSM QEGWKREIQG LFDELRAKEK bmy_10225T0/1-867 RPDFASILQQ LEALEAQVLR EMPRDSFHSM QEGWKREIQG LFDELRAKEK BACU003479/1-722 RPDFASILQQ LEALEAQVLR EMPRDSFHSM QEGWKREIQG LFDELRAKEK 451 500 ENSP00000309597/1-847 ELLSREEELT RAAREQRSQA EQLRRREHLL AQWELEVFER ELTLLLQQVD ENSBTAP00000005378/1-864 ELLSREEELT RAAREQRSQA EQLRRREHLL AQWELEVFER ELTLLLQQVD ENSTTRP00000002142/1-735 ELLSREEELT RAAREQRSQA EQLRRREHLL AQWELEVFER ELTLLLQQVD bmy_10225T0/1-867 ELLSREEELT RAAREQRSQA EQLRRREHLL AQWELEVFER ELTLLLQQVD BACU003479/1-722 ELLSREEELT RAAREQRSQA EQLRRREHLL AQWELEVFER ELTLLLQQVD 501 550 ENSP00000309597/1-847 RERPHVRRRR GTFKRSKLRA RDGGERISMP LDFKHRITVQ ASPGLDRRRN ENSBTAP00000005378/1-864 RERPHVRRRR GTFKRSKLRA RDGGERISMP LDFKHRITVQ ASPGLDRRRN ENSTTRP00000002142/1-735 RERPHVRRRR GTFKRSKLRA RDGGERISMP LDFKHRITVQ ASPGLDRRRN bmy_10225T0/1-867 RERPHVRRRR GTFKRSKLRA RDGGERISMP LDFKHRITVQ ASPGLDRRRN BACU003479/1-722 RERPHVRRRR GTFKRSKLRA RDGGERISMP LDFKHRITVQ ASPGLDRRRN 551 600 ENSP00000309597/1-847 VFEVGPGDSP TFPRFRAIQL EPAEPGQAWG RQSPRRLEDS SNGERRACWA ENSBTAP00000005378/1-864 VFEVGAGDSP TFPRFRAIQL EPAEPGQAWG RQSPRRLEDS SNGERRACWA ENSTTRP00000002142/1-735 VFEVGAGDSP TFPRFRAIQL EPAEPGQAWG RQSPRRLEDS SNGERRACWA bmy_10225T0/1-867 VFEVGAGDSP TFPRFRAIQL EPAEPGQAWG RQSPRRLEDS SNGERRACWA BACU003479/1-722 VFEVGAGDSP TFPRFRAIQL EPAEPGQAWG RQSPRRLEDS SNGERRACWA 601 650 ENSP00000309597/1-847 WGPSSPKPGE AQNGRRRSRM DEATWYLDSD DSSPLGSPST PPALNGNPPR ENSBTAP00000005378/1-864 WGPSSPKPGE AQNGRRRSRM DEATWYLDSD DSSPLGSPST PPMLNGNLPR ENSTTRP00000002142/1-735 WGPSSPKPGE AQNGRRRSRL DEATWYLDSD DSSPLGSPST PPMLNXXXXX bmy_10225T0/1-867 WGPSSPKPGE AQNGRRRSRM DEATWYLDSD DSSPLGSPST PPMLNGNPPR BACU003479/1-722 WGPSSPKPGE AQNGRRRSRM DEATWYLDSD DSSPLGSPST PPMLNGSAVS 651 700 ENSP00000309597/1-847 PSLEPEEPKR PVPAERGSSS GTPKLIQRAL LRGTALLASL GLGRDLQPPG ENSBTAP00000005378/1-864 PSPEPEEPRR PGPTERGSGS GTPKLIQRAL LRGTALLASL GLGRDLQPPG ENSTTRP00000002142/1-735 XXXXXXXXXX XXXXERGSGS GTPKLIQRAL LRGTALLASL GLGRDLQPPG bmy_10225T0/1-867 PSPEPEEPRR PGPAERGSGS GTPKLIQRAL LRGTALLASL GLGRDLQPPG BACU003479/1-722 PLP------- ---------- ---------- ---------- GISR------ 701 750 ENSP00000309597/1-847 GPGRERGESP -TTPPT---P TPAPCPTEPP PSPLICFSLK TP-------- ENSBTAP00000005378/1-864 GSGRERVEQP SPTPPRSSLP LPTPSPTEPP PSPLIRFSSE TPETPASPLS ENSTTRP00000002142/1-735 GPGRERGEPP -PTPRA---P LPTPSPAEPP PSPLIRFSPE MP-------- bmy_10225T0/1-867 GPGRERGEPP -PTPRA---P LPTPSPAEPP PSPLIRFSPE MPDAQASPLS BACU003479/1-722 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000309597/1-847 -DSP--PTPA -PLLLDLGIP -VGQRSAKSP RREEEPRGGT VSPPPGTSRS ENSBTAP00000005378/1-864 PDASGPAAPA PPLLLELGVP AAGQPSAKSR RREEERRASA VSPPPGISRS ENSTTRP00000002142/1-735 -DAP--PSPA -PLLLELGVP -AGQPSAKSP RREEERR--- ---------- bmy_10225T0/1-867 PDAPGSPAPA -PLLLELGVP -AGQPSAKSP RREEERR--- ---------- BACU003479/1-722 -SAPGTP--- ---------- ---------- ---------- ---------- 801 850 ENSP00000309597/1-847 APGTPGTPRS PPLGLISRPR PSPLRSRIDP WSFVSAGPRP SPLPSPQPAP ENSBTAP00000005378/1-864 APGTPGTPRS PPLGLISRPR PSPLRSRIDP WSFVSAGPRP SPLPSPQPAP ENSTTRP00000002142/1-735 ---------- ---------- ---------- ---------- ---------- bmy_10225T0/1-867 -----GTPRS PPLGLISRPR PSPLRSRIDP WSFVSAGPRP SPLPSPQPAP BACU003479/1-722 -----GTPRS PPLGLISRPR PSPLRSRIDP WSFVSAGPRP SPLPSPQPAP 851 900 ENSP00000309597/1-847 RRAPWTLFPD SDPFWDSPPA NPFQGGPQDC RAQTKDMGAQ APWVPEAGP ENSBTAP00000005378/1-864 RRAPWTLFPD SDPFWDSPPA NPFRGAPQDC RAQTKDVGAQ APWAPEAGP ENSTTRP00000002142/1-735 ---------- ---------- ---------- ---------- --------- bmy_10225T0/1-867 RRAPWTLFPD SDPFWDSPPA NPFRGGPQDC RAQTKDVGAQ APWAPEAGP BACU003479/1-722 RRAPWTLFPD SDPFWDSPPA NPFRGGPQDC RAQTKDVGAQ APWAPEAGP