KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:28 2014 Check: 00 .. Name: ENSP00000297293/1-1503 Len: 1516 Check: 3054 Weight: 1.00 Name: ENSBTAP00000005412/1-1464 Len: 1516 Check: 4751 Weight: 1.00 Name: ENSTTRP00000014874/1-1485 Len: 1516 Check: 3431 Weight: 1.00 Name: bmy_16991T0/1-1326 Len: 1516 Check: 6224 Weight: 1.00 Name: BACU012121/1-1497 Len: 1516 Check: 7089 Weight: 1.00 // 1 50 ENSP00000297293/1-1503 MPGPPALRRR LLLLLLVLLI AGSAGAAPLP QTGAGEAPPA AEVSSSFVIL ENSBTAP00000005412/1-1464 ---------- ---------- ---------- ----GEA-PV AEISMSFVIL ENSTTRP00000014874/1-1485 MPGPPPL--- ----LLLLLA AGSAGAAPLP QTGAGEA-PA AEISSSFVIL bmy_16991T0/1-1326 ---------- ---------- ---------- -MGSGR---- ---------- BACU012121/1-1497 MPGPPPL--- ----LLLLLA AGSAGAAPLP QTGAGEA-PA AEISSYFVIL 51 100 ENSP00000297293/1-1503 CVCSLIILIV LIANCVSCCK DPEIDFKEFE DNFDDEIDFT PPAEDTPSVQ ENSBTAP00000005412/1-1464 SVGSLMILIV LIANCVSCCK DPEIDFKEFE DNFDDEIDFT PPAEDTPSVQ ENSTTRP00000014874/1-1485 SVCSLMILIV LIVNCVSCCK DPEIDFKEFE DNFDDEIDFT PPAEDTPSVQ bmy_16991T0/1-1326 ---------- IIRDNRRCCA GVDVGGR--- ---------- ---GGTRVVE BACU012121/1-1497 SVCSLMILIV LIANCVSCCK DPEIDFKEFE DNFDDEIDFT PPAEDTPSVQ 101 150 ENSP00000297293/1-1503 SPAEVFTLSV PNISLPAPSQ FQPSVEGLKS QVARHSLNYI QEIGNGWFGK ENSBTAP00000005412/1-1464 SPAEVFTLSV PTVSLPAPSQ FQPSVEGLKS QVARHSLNYI QEIGNGWFGK ENSTTRP00000014874/1-1485 SPAEVFTLSV PNISLPAPSQ FQPSVEGLKS QVARHSLNYI QEIGNGWFGK bmy_16991T0/1-1326 GKC------- -----PAKSW TKPS------ ---------- ------W--Q BACU012121/1-1497 SPAEVFTLSV PNISLPAPSQ FQPSIEGLKS QVARHSLNYI QEIGNGWFGK 151 200 ENSP00000297293/1-1503 VLLGEIYTGT SVARVIVKEL KASANPKEQD TFLKNGEPYY ILQHPNILQC ENSBTAP00000005412/1-1464 VLLGEIYTGT SVARVIVKEL KASASPKEQD TFLKNGEPYY ILQHPNVLQC ENSTTRP00000014874/1-1485 VLLGEIYTGT SVVRVIVKEL KASASPKEHD TFLKNGEPYX XXXXXXXXXX bmy_16991T0/1-1326 LMLG------ ---------- ---------- -FKRT----- ---------- BACU012121/1-1497 VLLGEIYTGT SVARVIVKEL KASASPKEHD TFLKNGEPYY ILQHPNILQC 201 250 ENSP00000297293/1-1503 VGQCVEAIPY LLVFEFCDLG DLKAYLR-SE QEHMRGDSQT MLLQRMACEV ENSBTAP00000005412/1-1464 VGQCVEAIPY LLVFEFCDLG DLKAYLRGGE PEPARGDAQT MLLQRLACEI ENSTTRP00000014874/1-1485 XXXXXXXXXX XXXXXXXXXG DLKAYLRGGE PEPARGDAQT MLLQRLACEI bmy_16991T0/1-1326 ---------- --------LG DLKAHLRGGE PEPARGDART VLLQRLACEI BACU012121/1-1497 VGQCVEAIPY LLVFEFCDLG DLKAYLRGGE PEPARGDAQT RLLQRLACEI 251 300 ENSP00000297293/1-1503 AAGLAAMHKL HFLHSDLALR NCFLTSDLNV KVGDYGIGFS RYKEDYIETD ENSBTAP00000005412/1-1464 AAGLAAMHKR HFLHSDLALR NCFLTSDLNV KVGDYGIGFS RYKEDYIETD ENSTTRP00000014874/1-1485 AAGLAAMHKR HFLHSDLALR NCFLTSDLNV KVGDYGIGFS Y--EDYIETD bmy_16991T0/1-1326 AAGLAAMHKR HFLHSDLALR NCFLTSDLNV KVGDYGIGFS RYKEDYIETD BACU012121/1-1497 AAGLAAMHKR HFLHSDLALR NCFLTSDLNV KVGDYGIGFS RYKEDYIETD 301 350 ENSP00000297293/1-1503 DKKVFPLRWT APELVTSFQD RLLTADQTKY SNIWSLGVTL WELFDNAAQP ENSBTAP00000005412/1-1464 DKKFFPLRWT APELVTSFQD RLLTADQTKY SNIWSLGVTL WELFENAAQP ENSTTRP00000014874/1-1485 DKKFFPLRWT APELVTSFQD RLLTADQTKY SNIWSLGVTL WELFENATQP bmy_16991T0/1-1326 DKKFFPLRWT APELVTSFQD RLLTADQTKY SNIWSLGVTL WELFENAAQP BACU012121/1-1497 DKKFFPLRWT APELVTSFQD RLLTADQTKY GNIWSLGVTL WELFENAAQP 351 400 ENSP00000297293/1-1503 YSNLSNLDVL NQVIRERDTK LPKPQLEQPY SDRWYEVLQF CWLSPEKRPA ENSBTAP00000005412/1-1464 YSNLSNLDVL NQVIRERDTK LPKPQLEQPY SDRWYEVLQF CWLSPDKRPA ENSTTRP00000014874/1-1485 YSNLSNLEVL NQVIRERDTK LPKPQLEQPY SDRWYEVLQF CWLSPDKRPA bmy_16991T0/1-1326 YSNLSNLEVL NQVIRERDTK LPKPQLEQPY SDRWYEVLQF CWLSPDKRPA BACU012121/1-1497 YSNLSNLEVL NQVIRERDTK LPKPQLEQPY SDRWYEVLQF CWLSPDKRPA 401 450 ENSP00000297293/1-1503 AEDVHRLLTY LRLQSQRDSE VDFEQQWNAL KPNTNSRDSS NNAAFPILDH ENSBTAP00000005412/1-1464 AEDVHRLLTY LRMQSQRDPE VDFEQQWNAL KPTANSRDAA SNAAFPILDH ENSTTRP00000014874/1-1485 AEDVHRLLTY LRMQSQRDPE VDFEQQWNAL KPNTNSRDAA SNAAFPILDH bmy_16991T0/1-1326 AEDVHRLLTY LRMQSQRDPE VDFEQQWNAL KPNTNSRDAA SNAAFPILDH BACU012121/1-1497 AEDVHRLLTY LRMQSQRDPE VDFEQQWNAL KPNTNNRDTA SNAAFPILDH 451 500 ENSP00000297293/1-1503 FARDRLGREM EEVLTVTETS QGLSFEYVWE AAKHDHFDER SRGHLDEGLS ENSBTAP00000005412/1-1464 FTRDRLGREM EEVLTVTETS QGLSFEYVWE AAKHDHFDER SRGPPDEALS ENSTTRP00000014874/1-1485 FARDRLGREM EEVLTVTETS QGLSFEYVWE AAKHDPFEER GRGPPDEAVS bmy_16991T0/1-1326 FARDRLGREM EEVLTVTETS QGLSFEYVWE AAKHDHFEER GRGPPDEAVS BACU012121/1-1497 FTRDRLGREM EEVLTVTETS QGLSFEYVWE AAKHDHFEER GRGPPDEAVS 501 550 ENSP00000297293/1-1503 YTSIFYPVEV FESSLSDPGP GKQDDSGQDV PLRVPGVVPV FDAHNLSVGS ENSBTAP00000005412/1-1464 YTSIFFPTEA FESSLSDPGP GKQDDNGQDV PLRAPGVVPV FDAHNLSVGS ENSTTRP00000014874/1-1485 YTGIFFATEA FESPLSDPGP GKQDDSGQDV PLRAPGVVPV FDAHNLSVGS bmy_16991T0/1-1326 YTGIFFATEA FESPLSDPGP GKQDDSGQDV PLRAPGVVPV FDAHNLSVGS BACU012121/1-1497 YTGIFFATEA FESPLSDPGP GKQDDSGQDV PLRAPGVVPV FDAHNLSVGS 551 600 ENSP00000297293/1-1503 DYYIQLEEKS GSNLELDYPP ALLTTDMDNP ERTGPELSQL TALRSVELEE ENSBTAP00000005412/1-1464 DYYIQLEEKS RSNLELDYPP ALLTTEMDNP ERLGDGASQC LTLRSLELEE ENSTTRP00000014874/1-1485 DYYIQLEEKS GSNLELDYPP ALLTTEMDNP ERVGDTASQP LTLRNVELEE bmy_16991T0/1-1326 DYYIQLEEKS GSNLELDYPP ALLTTEMDNP ERVGDTASQL LTLRNVEFEE BACU012121/1-1497 DYYIQLEEKS GSNLELDYPP ALLTTEMDNP ERVGDTASQL LTLRNVEFEE 601 650 ENSP00000297293/1-1503 SSTDEDFFQS STDPKDSSLP GDLHVTSGPE SPFNNIFNDV DKSEDLPSHQ ENSBTAP00000005412/1-1464 SSTEEDFFQN SADPKDASRP EEAHSTKGPE SPFNSLFNDL DKSEALPSHQ ENSTTRP00000014874/1-1485 SSTDEDFFQN TTDPKDARVP EDVHVTKGPE SPFGSIFNDL DKSEALPSHQ bmy_16991T0/1-1326 SSTDEDFFQN TTDPKDARVP EDVPVTRGPE SPFDSIFNDL DKSEALPSHQ BACU012121/1-1497 SSTDEDFFQN TADPKDARVP EGVPVTRGPE SPFNSIFNDL DKSEALPSHQ 651 700 ENSP00000297293/1-1503 KIFDLMELNG VQADFKPATL SSSLDNPKES VITGHFEKEK PRKIFDSEPL ENSBTAP00000005412/1-1464 KIFDLMELNG VQADFKPPTL SSSLDDPKES VIARHLEREK PRKLFDCEPL ENSTTRP00000014874/1-1485 KIFDLMELNG VQADFKPTTL SSSLDDPRES VITHHLKKEK PRKLFDCEPL bmy_16991T0/1-1326 KIFDLMELNG VQADFKPTTL SSSLDDPRES VITRHLEKEK PQ-------- BACU012121/1-1497 KIFDLMELNG VQADFKPTTL SSSLDDPRES VITRHLEKEK PRKLFDCEPL 701 750 ENSP00000297293/1-1503 CLSDNLMHQD NFDPLNVQEL SENFLFLQEK NLLKGSLSSK EHINDLQTEL ENSBTAP00000005412/1-1464 YATDRLIHQD GFDQLDSEEL SENFLFLQEK NLLKDSLSSK EHVNDLQTEL ENSTTRP00000014874/1-1485 CSSENLVHQD GFDQLDDEEL SENFLFLQEK NLLKDSLSSK EHINDLQTEL bmy_16991T0/1-1326 ----NLVHQD GFDQLDVEEL SENFLFLQEK NLLKGSLSSK EHINDLQTEL BACU012121/1-1497 CSSENLVHQD GFDQLDVEEL SENFLFLQEK NLLKGSLSSK EHINDLQTEL 751 800 ENSP00000297293/1-1503 KNAGFTEAML ETSCRNSLDT ELQFAENKPG LSLLQENVST KGDDTDVMLT ENSBTAP00000005412/1-1464 RNAGFPEPML ETPSRKSVEA ESKFAENKPY SS-LQESISV HGKESGAAPK ENSTTRP00000014874/1-1485 RNAGFPETIL ESPSRNSLDA EFKFAENKPG SSLLQENVSA QGRGPGVAPK bmy_16991T0/1-1326 RNAGFPETIL ESPSRNSLDA ELKFAENKPG SSLLQENVSA QGRGPGVAPK BACU012121/1-1497 RNAGFPETIL ESPSRNSLDA ELKFAENKPG SSLLQENVSA QGRGPGVAPK 801 850 ENSP00000297293/1-1503 GDTLSTSLQS SPEVQVPPTS FETEETPRRV PPDSLPTQGE TQPTCLDVIV ENSBTAP00000005412/1-1464 GGTGAAASPC SPQPQVPPTS LETQGPPHDV PPGAALKQGG ARPTHPEGGV ENSTTRP00000014874/1-1485 DGTWDAASPP CPKAQVPPTS LETEGPPHDV APGVPLKQGG AKPTCLDVGV bmy_16991T0/1-1326 DGTGDAASPP CPQVQVPPTS LEREGPPHDV PPGVSLKQGG AKPLCLDVSV BACU012121/1-1497 DGTGDAASPP CPQVQVPPTS LETEGPPHDV PPSVSLKQGG AKPLCLDVGV 851 900 ENSP00000297293/1-1503 PEDCLHQDIS PDAVTVPVEI LSTDARTHSL DNRSQDSPGE SEETLRLTES ENSBTAP00000005412/1-1464 CEDSTCREAN PDSTPAPPDT PAPTG----- -NGSPALTQH GEGAVSLAQS ENSTTRP00000014874/1-1485 REDGVCREVN PDSTPAPVDT P-PAG----- -DRSRDLTPQ REGALRLTQS bmy_16991T0/1-1326 REDGVCRDVN PDPAPAPVDA P-LTG----- -DRSRDLTPQ REGALRLTQS BACU012121/1-1497 REDGVCRDVN PDPAPAPVDA P-LTG----- -DRSRDLTPQ REGALRLTQS 901 950 ENSP00000297293/1-1503 DSVLADDILA SRVSVGSSLP ELGQELHNKP FSEDHHSHRR LEKNLEAVET ENSBTAP00000005412/1-1464 DPSLVQDTAA SKVSIGNGLP ESRQNLENQL PLEDHGPRGP RERAREAAEV ENSTTRP00000014874/1-1485 DSGLVHSTLA SKVSIGNSLP ELRQSLRSQP PLEDHCRRGL PERALEAADA bmy_16991T0/1-1326 DSGLVHSTLA SKVSIGNSLP ELRQNLQSQP PLEDHCRRGL PERALEAVDA BACU012121/1-1497 DSGLVHSTLA SKVSIGNSLP ELRQHLQSQP PLEDPCRRGL PERALEAVHA 951 1000 ENSP00000297293/1-1503 LNQLNSKD-A AKEAGLVSAL SSDSTSQDSL LEDSLSAPFP ASEPSLETPD ENSBTAP00000005412/1-1464 LGQLGRRDAA AEEGGLVSTL SSDSASQDSL LEDSLSAPGP ASEPSVETPD ENSTTRP00000014874/1-1485 LSQLGCKDAA AEERGLVSAL SLDSASQDSL LEDSLSTPIP TSEQSVETPG bmy_16991T0/1-1326 LSQLGCKDAA AEERSLVSAL SLDSASQDSL LEDSLSTPIL TSEQSVETPG BACU012121/1-1497 LSQLGCNDAA AEGRGLVSAL SLDSASQDSL LEDSLSTPIP TSEQSVETPG 1001 1050 ENSP00000297293/1-1503 SLESVDVHEA LLDSLGSHTP QKLVPPDKPA DSGYETENLE SPEWTLHPAP ENSBTAP00000005412/1-1464 SLDSMDVHEA FLGSLGPHAP QKLLTPDKPA DSGYETENLE SPEWTLHPAP ENSTTRP00000014874/1-1485 SLDSVDVREV LLGSLGPHTP QRLLPPDKPA DSGYETENLE SPEWTLHPAP bmy_16991T0/1-1326 SLDSVDVREV LLGSLGPHTP QRLLPPDKPA DSGYETENLE SPEWTLHPAP BACU012121/1-1497 SLDSVDVREV LLGSLGPHTP QRLLPPDKPA DSGYETENLE SPEWTLHLAP 1051 1100 ENSP00000297293/1-1503 EGTADSEPAT TGDGGHSGLP PNPVIVISDA GDGHRGTEVT PETFTAGSQG ENSBTAP00000005412/1-1464 EGAAAPDTAS AGEDTPTGLP PKPVIVISDA TDSHRGTEVT SQTAAPASQG ENSTTRP00000014874/1-1485 DGAIAPDAGS AGDGVRGGPP PNPIIVVSDA ADGHRGAEIT SQTSAPGCQG bmy_16991T0/1-1326 DGAIAPDAAS VGDSVRGGPP LNPVIVISDA ADGHRGAEVT SQTSAPGCQG BACU012121/1-1497 NGAIAPDAAS AGHGVRGGPP PNPIIVISDA ADGHRGAEVT SQTSAPGCQG 1101 1150 ENSP00000297293/1-1503 SYRDSAYFSD NDSEPEKRSE EVPGTSPSAL VLVQEQPLPE PVLPEQSPAA ENSBTAP00000005412/1-1464 SHRDSAYFSD NDSEPDRRSE GALGTSVSA- -LGADQPLPE PGVPLQSPSP ENSTTRP00000014874/1-1485 SYRDSAYFSD NDSEPDKKSD GVPGASASA- -LGADQPLPE PGTPEQSPSP bmy_16991T0/1-1326 SYRDSAYFSD NDSEPDKKSE GVPGASASA- -LGAEQPLPE PGAPEQSPSP BACU012121/1-1497 SYRDSAYFSD NDSEPDKKSE GVPGASASA- -LGAEQPPPE PGAPEQSPSP 1151 1200 ENSP00000297293/1-1503 QDSCLEARKS QPDESCLSAL HNSSDLELRA TPEPAQTGVP QQVHPTED-E ENSBTAP00000005412/1-1464 LDSCLDSSSS PPDPSCPPAP QKSRHLESRE PTEPAPLDPP THTLPPDD-E ENSTTRP00000014874/1-1485 PDGCLETSSS QPGQRCPPAR QSASHLESRE AAEPAPAGAS RQMHPPDDGE bmy_16991T0/1-1326 PDGCLETSSS QPGQRCPPAL QDAGHLESRE AAEPARADAS RQMRPPDHSE BACU012121/1-1497 PDGCLETSSS QPGQRCPPAP QIAGHLESRE AAEPAPAGAS RQMHPPDDSE 1201 1250 ENSP00000297293/1-1503 ASSPWSVLNA ELSSGDDFET QDDRPCTLAS TGTNTNELLA YTNSAL---- ENSBTAP00000005412/1-1464 AGSPSSLQNS ELSSGDDLEA PEEPPCTLAS TGTNTDELLA LTHAPLRCGG ENSTTRP00000014874/1-1485 AGSPSSLLNS ELSSGDDLEA QEEPPCTLAS TGTNTNELLA FADSAL---- bmy_16991T0/1-1326 AGSPPSLLNS ELSSGDDLEA QEEPPCTLAS TGTNTNELLA FADAPLRSGG BACU012121/1-1497 AGSPSSLLNS ELSSGEDLEA QEEPPCTLAS TGTNTNELLA FADAPLRSGG 1251 1300 ENSP00000297293/1-1503 ------DKSL SSHSEGPKLK EPDIEGKYLG KLGVSGMLDL SEDGMDADEE ENSBTAP00000005412/1-1464 PAAPTPEKAL CGHSEGPKLK EPDVEGKYLG KLGVSGMLDL AEDGMDADEE ENSTTRP00000014874/1-1485 ------EKAL RDHSEGPKLK EPDVEGKYLG KLGVPGVLDL TEDGIDADEE bmy_16991T0/1-1326 PAAPMVEKAL RGHSEGPKLK EPDVEGKYLG KLGVPGALDL TEDGIDADEE BACU012121/1-1497 PAAPMVEKAL RGHSEGPKLK EPDVEGKYLG KLGVPGVLDL TEDGIDADEE 1301 1350 ENSP00000297293/1-1503 DENSDDSDED LRAFNLHSLS SESEDETEHP VPIILSNEDG RHLRSLLKPT ENSBTAP00000005412/1-1464 DENSEDSDED LRAFTLHSLS SESEDEAEHP VPVVLSREDG RHLRSLLKPV ENSTTRP00000014874/1-1485 DENSDDSDED LRAFTLHSLS SESEDEVEHI VPVVLSREDG RHLRSLLKPS bmy_16991T0/1-1326 DENSDDSDED LRAFTLHSLS SESEDEAEHL VPVVLGCEDG RHLRSLLKPS BACU012121/1-1497 DENSDDSDED LRAFTLHSLS SESEDEAEHL VPVVLGCEDG RHLRSLLKPS 1351 1400 ENSP00000297293/1-1503 AANAPDPLPE DWKKEKKAVT FFDDVTVYLF DQETPTKELG PCGGEACGPD ENSBTAP00000005412/1-1464 D-----PLPG C-RRERKAVT FFDDVTVYLF DQETPTKELG HGGGAARSPE ENSTTRP00000014874/1-1485 AS-ADQP-PD DWKKEKKAVT FFDDVTVYLF DQETPTKELG RCGGEACGPG bmy_16991T0/1-1326 AS-ADQP-PD DWKKEKKAVT FFDDVTVYLF DQETPTKELG HCGGEACGPE BACU012121/1-1497 AS-ADQP-PD DWKKEKKAVT FFDDVTVYLF DQETPTKELG HCGGEACGPE 1401 1450 ENSP00000297293/1-1503 LSGPAPASGS PYLSRCINSE SSTDEEGGGF EWDDDFSPDP FMSKTTSNLL ENSBTAP00000005412/1-1464 RSSPAPAAGS PHLSRGLNSE SSTDEEGGGF EWDDDFSPDP FLSRTTSHLL ENSTTRP00000014874/1-1485 LSSPTPSSGS PYPSRCMNSE SSTDEEGGGF EWDDDFSPDP FMSKTTSHLL bmy_16991T0/1-1326 LSSPTPSSGS PYPSRCMNSE SSTDEEGGGF EWDDDFSPDP FMSKTTSHLL BACU012121/1-1497 LSSPTPSPGS PYPSRCMNSE SSTDEEGGGF EWDDDFSPDP FMSKTTSHLL 1451 1500 ENSP00000297293/1-1503 SSKPSLQTSK YFSPPPPARS TEQSWPHSAP YSRFSISPAN IASFSLTHLT ENSBTAP00000005412/1-1464 SSKPALQTSK YFSPPPP-RS AEPSWPHAAP YSRFSITPAS IASFSLTHLT ENSTTRP00000014874/1-1485 RSKPSLQTSK YFSPPPPPRS TEPSWPHGAP YSRFSITPAS IASFSLTHLT bmy_16991T0/1-1326 SSKPSLQTSK YFSPPPPPRS TEPSWPHVAP YSRFSITPAS IASFSLTHLT BACU012121/1-1497 SSKPSLQTSK YFSPPPPPRS TEPSWPHMAP YSRFSITPAS IASFSLTHLT 1501 1550 ENSP00000297293/1-1503 DSDIEQGGSS EDGEKD ENSBTAP00000005412/1-1464 DSDMEQGGSS EDGEKD ENSTTRP00000014874/1-1485 DSDMEQGGSS EDGEKD bmy_16991T0/1-1326 DSDMEQGGSS EDGEKD BACU012121/1-1497 DSDVEQGGSS EDGEKD