KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:29 2014 Check: 00 .. Name: ENSTTRP00000000666/1-686 Len: 709 Check: 3379 Weight: 1.00 Name: ENSP00000056233/1-694 Len: 709 Check: 322 Weight: 1.00 Name: ENSBTAP00000005413/1-695 Len: 709 Check: 8497 Weight: 1.00 Name: bmy_15253T0/1-404 Len: 709 Check: 7271 Weight: 1.00 Name: BACU003765/1-392 Len: 709 Check: 921 Weight: 1.00 // 1 50 ENSTTRP00000000666/1-686 MKYLKPWWSD GGSLLHLTIL LSLAGLR--- ---LDLDLYL LLPPRTLLGD ENSP00000056233/1-694 MKHLKRWWSA GGGLLHLTLL LSLAGLR--- ---VDLDLYL LLPPPTLLQD ENSBTAP00000005413/1-695 MKYLKPWWSD GGSLFHLTIL LSLAELRLDL DLDLDLDLYL LFPPRTLLGD bmy_15253T0/1-404 ---------- ---------- ---------- ---------- ---------- BACU003765/1-392 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000000666/1-686 ELLLSGGPTS PAYALSPFPA SGGWRRAELL HPKGRERDPV APPESQLLRE ENSP00000056233/1-694 ELLFLGGPAS SAYALSPFSA SGGWGRAGHL HPKGRELDPA APPEGQLLRE ENSBTAP00000005413/1-695 ELLLRNGQTS HISALSPFPA SGGWGRAELL HPKCWERDPA APPEGRLLRE bmy_15253T0/1-404 ---------- ---------- ---------- ---------- ---------- BACU003765/1-392 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000000666/1-686 VRALGVPFIP CTRVDAWLVH SVAAGDADGA HALLGAAAAA SSAGGVGAGV ENSP00000056233/1-694 VRALGVPFVP RTSVDAWLVH SVAAGSADEA HGLLG-AAAA SSTGGAGASV ENSBTAP00000005413/1-695 VRALGVPFIP SIRVDAWLVH SVATGDADGA HALLG-AAAA SSAGGVGAGV bmy_15253T0/1-404 ---------- ---------- ---------- ---------- ---------- BACU003765/1-392 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000000666/1-686 NGVSQAAPGS GGNPRAAPSS PLAAG-EEEK APAEPTAQVS DAGGHASEEN ENSP00000056233/1-694 DGGSQAVQGG GGDPRAARSG PLDAG-EEEK APAEPTAQVP DAGGCASEEN ENSBTAP00000005413/1-695 EGVSQAAPGG GGGPRAVQSS PLAAGEEEEK APAERTAQVS DADGHASEEN bmy_15253T0/1-404 ---------- ---------- ---------- ---------- ---------- BACU003765/1-392 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000000666/1-686 EVLR----AV DHSSQHEENE QRASTQREKS LQQKNE-ENK VADKPAWEAE ENSP00000056233/1-694 GVLREKHEAV DHSSQHEENE ERVSAQKENS LQQNDDDENK IAEKPDWEAE ENSBTAP00000005413/1-695 EVLR----GV SHSPQHEENE QRSSTQKEKS LQQKNEDENK VADKPAWEAE bmy_15253T0/1-404 ---------- ---------- ---------- ---------- ---------- BACU003765/1-392 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000000666/1-686 KTSEPRNEIH RNGTDTVFSL EDLFQLLSSQ PENPLEGISL GDS-PLPGSI ENSP00000056233/1-694 KTTESRNERH LNGTDTSFSL EDLFQLLSSQ PENSLEGISL GDI-PLPGSI ENSBTAP00000005413/1-695 KTTESRSERY QNGTDAFFSL EDLFQLLSSQ PENLLEGVSL GDIAPLPRSI bmy_15253T0/1-404 ---------- ---------- ---------- ---------- ---------- BACU003765/1-392 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000000666/1-686 NDGMNSPTHY NANYSQAVSH DVNLHEAMLL CPDNTFRRDP LARTSQPQEL ENSP00000056233/1-694 SDGMNSSAHY HVNFSQAISQ DVNLHEAILL CPNNTFRRDP TARTSQSQEP ENSBTAP00000005413/1-695 NDGMNSPTHY NVNFSEAVSH DVSLHEAMLR CSDNTFRRDP VARTSQPQEQ bmy_15253T0/1-404 ---MNSPTHY NANFSQAISH DVNLHEAMLL CPDNTFRRDP VARTSQPQEL BACU003765/1-392 ---------- ----SQAISH DVNLHEAMLL CPDNTFRRDP VARTSQPQEL 351 400 ENSTTRP00000000666/1-686 FLQLNSPLTN PEQTLSGTNL TGFLPF-DNQ VRDLTNQDLL YDLDVNIFDE ENSP00000056233/1-694 FLQLNSHTTN PEQTLPGTNL TGFLSPVDNH MRNLTSQDLL YDLDINIFDE ENSBTAP00000005413/1-695 ILQLSS-ITN TEQTLPGTNL TGFLPFVDNQ MRNL-SQDHL YDLDINILDE bmy_15253T0/1-404 FLHFNSPLTN PEHTLSGTNL TGFLPF-DNQ MRNLTNQDLL YDLDINVFDE BACU003765/1-392 FLQLNS-LTN PEHTLSGTNL TGFLPF-DNQ MRNLTNQDLL YDLDINIFDE 401 450 ENSTTRP00000000666/1-686 INLMSLATEE GFDPMEISQL FEEPDSDSGL SLNSSHNSTS VTKSNSSHSI ENSP00000056233/1-694 INLMSLATED NFDPIDVSQL FDEPDSDSGL SLDSSHNNTS VIKSNSSHSV ENSBTAP00000005413/1-695 TNLMSLAT-- GFDPMEVSWL LEEPGYDSGL SLDSSNNSTS VIKSNSSHSI bmy_15253T0/1-404 INLMSLATEG GFDPMEVSQL FEEPDSDSGL SLNSSHNSTS VTKSNSSRSV BACU003765/1-392 INLMSLATEG GFDPMEVSQL FEEPDSDSGL SLNSSHNSTS VTKSNSSHSE 451 500 ENSTTRP00000000666/1-686 CE-GASLSSS E--SLSHRDL EGAVGGYYPE PTKLCHMDHR SDSHFHGDFA ENSP00000056233/1-694 CDEGAIGYCT DHESSSHHDL EGAVGGYYPE PSKLCHLD-Q SDSDFHGDLT ENSBTAP00000005413/1-695 CE-GATGSSS D---LSHHDL EGAVGGYCPE PSKLCYMNDK SDSHFHGDLV bmy_15253T0/1-404 CE-GASRSSS DLGSLSHRDL EGAVGGCYPE PTKLCHMDHR SDSHFPGDLA BACU003765/1-392 CE-GASRSSS DLGSLSHRDL EGAVGGCYPE PTKLCHMDHR SDSHFHEDLA 501 550 ENSTTRP00000000666/1-686 FQPVLHNHTY HLQPSALEST YESFSWPGKS QKIRRGYPND TDRNLSRDER ENSP00000056233/1-694 FQHVFHNHTY HLQPTAPEST SEPFPWPGKS QKIRSRYLED TDRNLSRDEQ ENSBTAP00000005413/1-695 FQHVSHNHTY HLEPSALEST SESFSMPGKS QKISR-YLND TDRNLSRDEQ bmy_15253T0/1-404 FQPVLHNHTY HLKPSALEST YESFSWPGKS QKIRRGYLND TDRNLSRDER BACU003765/1-392 FQPVLHNHTY HLKPSALEST YETFSWPGKS QKIRHGYLND TDRNLSRDER 551 600 ENSTTRP00000000666/1-686 RAKALHIPFS VDEIVQMPVD SFNSMLSRYY LTDFQVSLIR XXXXXXXXXX ENSP00000056233/1-694 RAKALHIPFS VDEIVGMPVD SFNSMLSRYY LTDLQVSLIR DIRRRGKNKV ENSBTAP00000005413/1-695 RAKALHIPFS VDEIIRMPVD SFNSMLSRHY LTDLQVSLIR DIRRRGKNKV bmy_15253T0/1-404 RAKALHIPFS VDEIVHMPVD SFNSMLSRYY LTDFQVSLIR DIRRRGKNKV BACU003765/1-392 RAKALHIPFS VDEIVHMPVD SFNSMLSRYY LTDFQVSLIR DIRRRGKNKV 601 650 ENSTTRP00000000666/1-686 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXKQKLHD ENSP00000056233/1-694 AAQNCRKRKL DIILNLEDDV CNLQAKKETL KREQAQCNKA INIMKQKLHD ENSBTAP00000005413/1-695 AAQNCRKRKL DVILNLEDDV CSLQAKKETL KREQSQCHKA INIMKQKLHH bmy_15253T0/1-404 AAQNCRRRKL DVILNLEDDV CNLQAKKETL KRERAQCHKA INIMKQKLHD BACU003765/1-392 AAQNCRRRKL DVILNLEDDV CNLQAKKETL KRERSQCHKA INIMKQKLHD 651 700 ENSTTRP00000000666/1-686 LYHDVFSR-R DDEGRPVNPN QYALQCSRDG SVLIVPKELV TPGQKKENQK ENSP00000056233/1-694 LYHDIFSRLR DDQGRPVNPN HYALQCTHDG SILIVPKELV ASGHKKETQK ENSBTAP00000005413/1-695 LYCDVFSRLR DDQGRPVSPN QYALQCTHDG SVVIVPKELI IPGQKKENQK bmy_15253T0/1-404 LYHDVFSRLR DDEGRPVNPN QYALQCSLDG SVLIVPKELV TPGQKKENQK BACU003765/1-392 LYHDVFSRLR DDEGRPVNPN QYALQCSLDG SVLIVPKELV TPGQKKENQK 701 750 ENSTTRP00000000666/1-686 GKKK----- ENSP00000056233/1-694 GKRK----- ENSBTAP00000005413/1-695 GKRKNERKN bmy_15253T0/1-404 GKRKSERRN BACU003765/1-392 GKRKSERRN