KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:30 2014 Check: 00 .. Name: ENSP00000382805/1-736 Len: 748 Check: 8964 Weight: 1.00 Name: ENSTTRP00000000678/1-735 Len: 748 Check: 5440 Weight: 1.00 Name: ENSBTAP00000005416/1-741 Len: 748 Check: 6055 Weight: 1.00 Name: bmy_09512T0/1-616 Len: 748 Check: 6882 Weight: 1.00 Name: BACU005043/1-744 Len: 748 Check: 5951 Weight: 1.00 // 1 50 ENSP00000382805/1-736 MSLSENSVFA YESSVHSTNV LLSLNDQRKK DVLCDVTIFV EGQRFRAHRS ENSTTRP00000000678/1-735 MSLGENAVFA YESSVHSGHV LRSLDEQRRK DVLCDVTVLV EGQPFRAHRA ENSBTAP00000005416/1-741 MWLGENAVFA YESSVHGAHV LRCLDEQRRK DELCDVTVLV EGRPFRAHRA bmy_09512T0/1-616 MSLGENAVFA YESSVHSGHV LRSLDEQRRK DVLCDVTVLV EGRPFRAHRA BACU005043/1-744 MSLGENAVFA YESSVHSGHV LRSLDEQRRK DVLCDVTVLV EGRPFRAHRA 51 100 ENSP00000382805/1-736 VLAACSSYFH SRIVGQADGE LNITLPEEVT VKGFEPLIQF AYTAKLILSK ENSTTRP00000000678/1-735 VLAACSAYFH SRLAGQADAD LRITLPEEVT VKGFEPLIQF AYTAKLILSK ENSBTAP00000005416/1-741 VLAACSAYFH ARLAGAAGPE PRITLPAEVT VKGFEPLIQF AYTAKLILSK bmy_09512T0/1-616 VLAACSAYFR SRLAGQADAE LRITLPEEVT VKGFEPLIQF AYTAKLILSK BACU005043/1-744 LLAACSAYFR SRLAGQADAE LRITLPEEVT VKGFEPLIQF AYTAKLILSK 101 150 ENSP00000382805/1-736 ENVDEVCKCV EFLSVHNIEE SCFQFLKFKF LDSTADQQEC PRKKCFSSHC ENSTTRP00000000678/1-735 DNVDEVYKCV EFLGVPDIEE SCFQFLKYKF LDSTADQQEC PRKKCFSSPC ENSBTAP00000005416/1-741 DNVDEVYKCV EFLGVPDIEE SCFQFLKYKF LDSTADQQEC PRKKCFSSPC bmy_09512T0/1-616 DNVDEVYKCV EFLGVPDIEE SCFQFLKYKF LDSTADQQEC PRKKCFSSPC BACU005043/1-744 DNVDEVYKCV EFLGVPDIEE SCFQFLKYKF LDSTADQQEC PRKKCFSSPC 151 200 ENSP00000382805/1-736 QKTDLKLSLL DQRDLETDEV EEFLENKNVQ TPQCKLRRYQ GNAKASPPLQ ENSTTRP00000000678/1-735 QKPDFRFSLL DQRDLEIDEV EEFLENKNVQ TPHCKLRRYQ GSAKVSPPLQ ENSBTAP00000005416/1-741 QKPDFKFSLL DQKDLEIDEV EEFLDNKNVQ TPHCKLRRYQ GSAKATPPLQ bmy_09512T0/1-616 QKPDFKFSLL DQRDLEIDEV EEILENKNVQ TPHCKLRRYQ GSAKVSPPLQ BACU005043/1-744 QKPDFKFSLL DQRDLEIDEV EEILENKNVQ TPHCKLRRYQ GSAKVSPPLQ 201 250 ENSP00000382805/1-736 DSASQTYESM CLEKDAALAL PSLCPKYRKF QKAFGTDRVR TGESSVKDIH ENSTTRP00000000678/1-735 DSASQTCESM CLAKDAALAL PSLCPKYRKF QKAFGTDRVR TVESSVKDIH ENSBTAP00000005416/1-741 DSASQTCESM CLEKDAALAL PSLCPKYRKF QKAFGTDRVR TVESSVKDIQ bmy_09512T0/1-616 DSASQTCESM CLEKDAALAL PSLCPKYRKF QKAFGTDRVR TVESSVKDIH BACU005043/1-744 DSASQTCESM CLEKGAALAL PSLCPKYRKF QKAFGTDRVR TVESSVKDIH 251 300 ENSP00000382805/1-736 -ASVQPNERS ENECLGGVPE CRDLQVMLKC DESKLAMEPE ET-KKDPASQ ENSTTRP00000000678/1-735 TSSAQPNETS ENECLGGIQD CADLQVILKC EEGKLAMEHE EAKKKDPASQ ENSBTAP00000005416/1-741 AASVQPHEPS ENECLGGIQD CADLQVILKC EERKSAMEHE EAKKKDLASQ bmy_09512T0/1-616 TSSVQPNETS ENECLGGIQD CADLQVILKC EERKLAMEHE ETKKKDPASQ BACU005043/1-744 TSSVQPNETS ENECLGGIQD CADLQVILKC EERKLAMEHE ETKKKDPASQ 301 350 ENSP00000382805/1-736 CPTEKSEVTP FPHNSSIDPH GLYSLSLLHT YDQYGDLNFA GMQNTTVLTE ENSTTRP00000000678/1-735 CPSGKTEATP FPPTST-DPH GLYSLSLLHT YDQYGDLNFA GMQNTTVLTE ENSBTAP00000005416/1-741 GSSGKTETTP CPPNSA-DPH RFYSLSVLHT YDQYGDLNFA GTQNTTVLTE bmy_09512T0/1-616 CPSGKTEATP FPPSST-DPH GLYPLSLLHT YDQYGDLNFA GMQNTTVLTE BACU005043/1-744 CPSGKTEATP FPPSST-DPH GLYSLSLLHT YDQYGDLNFA GMQNTTVLTE 351 400 ENSP00000382805/1-736 KPLSGTDV-Q EKTFGESQDL PLKSDLGTRE DSSVASSDRS SVEREVAEHL ENSTTRP00000000678/1-735 KPLSGSDVRE EKTFGESQD- -LKSDSGPRE DSSLASSDLS SVEREVAEHL ENSBTAP00000005416/1-741 KPSSGSDVRE EKAFGESPD- -VKSDSGPRK ESGLAASDLS SVEREVAEHL bmy_09512T0/1-616 KPLSASDVRE EKTFGESQD- -LKSDSGPRE DSNLASSDLS SVEREVAEHL BACU005043/1-744 KPLSASDVRE EKTFSESQD- -LKSDSGPRE DSNLASSDLS SVEREVAEHL 401 450 ENSP00000382805/1-736 AKGFWSDICS TDTPCQMQLS PAVAKDGSEQ I-SQKRSECP WLGIRISESP ENSTTRP00000000678/1-735 AKGFWSDICS TDSPCQMQLS PAVAKDGSEQ IYSQKRSECP WLGIRISESP ENSBTAP00000005416/1-741 AKGFWSDVCN TDAPCQMQLS PVVAKDGPEQ NYPQKRSECP WLGIRISESP bmy_09512T0/1-616 AKGFWSDICS TDSPCQMQLS PAVAKDGSEQ TYSQKRSECP WLGIRISESP BACU005043/1-744 AKGFWSDICS TDSPCQMQLS PAVAKDGSEQ IYSQKRSECP WLGIRISDSP 451 500 ENSP00000382805/1-736 EPGQRTFTTL SSVNCPFIST LSTEGCSSNL EIGNDDYVSE PQQEPCPYAC ENSTTRP00000000678/1-735 EPGQRTFTTL SSVNCPFIST LSTEGCSSNL EIGNDDYVSE PQQEPCPYAC ENSBTAP00000005416/1-741 EPGQRTFTTL SSVSCPFIST LSPEGCSSSL EIGTDDYASE PQQEPCPYAC bmy_09512T0/1-616 EPGQRTFTTL SSVNCPFIST LSTEGCSSNL EIGNDDYVSE PQQEPCPYAC BACU005043/1-744 EPGQRTFTTL SSVNCPFIST LSTEGCSSNL EIGNDDYVSE PQQEPCPYAC 501 550 ENSP00000382805/1-736 VISLGDDSET DTEGDSESCS AREQECEVKL PFNAQRIISL SRNDFQSLLK ENSTTRP00000000678/1-735 VISLGDDSET DTEGDSEPCS AREQECEXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000005416/1-741 VISLGDDSET DTEGDSEPCS AREQECEVKL PFNAQRIISL SRNDFQSLLK bmy_09512T0/1-616 VISLGDDSET DTEGDSEPCS AREQECEVKL PFNAQRIISL SRNDFQSLLK BACU005043/1-744 VISLGDDSET DTEGDSEPCS AREQECEVKL PFNAQRIISL SRNDFQSLLK 551 600 ENSP00000382805/1-736 MHKLTPEQLD CIHDIRRRSK NRIAAQRCRK RKLDCIQNLE SEIEKLQSEK ENSTTRP00000000678/1-735 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXQNEK ENSBTAP00000005416/1-741 MHKLTPEQLD CIHDIRRRSK NRIAAQRCRK RKLDCIQNLE SEIEKLQNEK bmy_09512T0/1-616 MHKLTPEQLD CIHDIRRRSK NRIAAQRCRK RKLDCIQNLE SEIEKLVSMQ BACU005043/1-744 MHKLTPEQLD CIHDIRRRSK NRIAAQRCRK RKLDCIQNLE SEIEKLQNEK 601 650 ENSP00000382805/1-736 ESLLKERDHI LSTLGETKQN LTGLCQKVCK EAALSQEQIQ ILAKYSAADC ENSTTRP00000000678/1-735 ESLLKERDHI LSTLGETKQN LTGLCQQVCK EAALSQEQIQ ILAKYSASDC ENSBTAP00000005416/1-741 ESLLKERDHI LSTLGETKQN LTGLCQQVCK EAALSQEQIQ ILAKYSASDC bmy_09512T0/1-616 ---------- ---------- ---------- ---------- -VSSYSNSNN BACU005043/1-744 ESLLKERDHI LSTLGETKQN LTGLCQQVCK EAALSQEQIQ ILAKYSASDC 651 700 ENSP00000382805/1-736 PLSFLISEKD KSTPDGELAL PSIFSLSDRP PAVLP----- ---PCARGNS ENSTTRP00000000678/1-735 PLSFLISEKG KSTPDGELTL PSILSLPEGP AAGPP----- ---PSAKG-G ENSBTAP00000005416/1-741 PLSLLISEKG KSTPDSELAL PSILSLSERP AAGLPAGEPS LCYPSTKG-G bmy_09512T0/1-616 SF-FLFFSDG K--------- ---------- ---------- ---------- BACU005043/1-744 PLSFLISEKG KSTADGELTL PSILSLREGP AAGPPAGEQS PRYPSAEG-G 701 750 ENSP00000382805/1-736 EPGYARGQES QQMSTATSEQ AGPAEQCRQS GGISDFCQQM TDKCTTDE ENSTTRP00000000678/1-735 EAGGAWGPES RQL-SAPSEQ AGPGEQCRQS GGISDFCQQM TDKCTTDE ENSBTAP00000005416/1-741 EAGGVRGQES QTATSTLSET REP---CRQS GGISDFCQQM TDKCTTDE bmy_09512T0/1-616 ---------- ---------- ---------- ---------- -------- BACU005043/1-744 EAGGAWGLEA RAAASAPSEQ AGPGEQCRQS GGISDFCQQM TDKCTTDE