KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:26:30 2014 Check: 00 .. Name: ENSP00000361025/1-680 Len: 681 Check: 9154 Weight: 1.00 Name: ENSBTAP00000005418/1-644 Len: 681 Check: 3142 Weight: 1.00 Name: ENSTTRP00000007259/1-640 Len: 681 Check: 6973 Weight: 1.00 Name: bmy_20930T0/1-450 Len: 681 Check: 2345 Weight: 1.00 // 1 50 ENSP00000361025/1-680 MLGPGSNRRR PTQGERGPG- SPGEPMEKYQ VLYQLNPGAL GVNLVVEEME ENSBTAP00000005418/1-644 ---------- ---------- -----LFCWQ ILEWLNPGAL GVNLVVEETK ENSTTRP00000007259/1-640 MISLGSDPQR PVVGQGGPEV SPQDTMEKYQ ILDWLNPGAL GVNLLVEETK bmy_20930T0/1-450 ---------- PGAGD-GPE- AP-------- -----RPGPL G--------- 51 100 ENSP00000361025/1-680 TKVKHVIKQV ECMDDHYASQ ALEELMPLLK LRHAHISVYQ ELFITWNGEI ENSBTAP00000005418/1-644 TKVKRVIKQV ECIDEHQANE ALEELMPLLK LQHAHISIYQ ELFIMWNSEI ENSTTRP00000007259/1-640 TKVKHVIKQV ECIDEHQANE ALEELMPLLK LQHAHVSIYQ ELFITWNSEX bmy_20930T0/1-450 ARTRHLAKGL -C-------- ------PL-- ---------- --------QI 101 150 ENSP00000361025/1-680 SSLYLCLVME FNELSFQEVI EDKRKAKKII DSEWMQNVLG QVLDALEYLH ENSBTAP00000005418/1-644 SSLFLCLVME YHKESFQNVI EKNRAAKTAI DSEWLQNMLG QVLDALDYLH ENSTTRP00000007259/1-640 XXXXXXXXXX XXXXSFQNVI EKKRAAKRVI DSQWMQNMLG QVLNALEYLH bmy_20930T0/1-450 SSLFLCLVME FHEESFQDVI EKKRAAKRVI DSQ------- ---------- 151 200 ENSP00000361025/1-680 HLDIIHRNLK PSNIILISSD HCKLQDLSSN VLMTDKAKWN IRAEEDPFRK ENSBTAP00000005418/1-644 HLDVIHRNLK PSNIALVSNA HCKLQDLSSN TLMTDKAKWN VRAEEDPLQK ENSTTRP00000007259/1-640 QLDIIHRNLK PSNIALVSSD HCKLQDLSSN ALMTDVAKWN VRAEEDPSHK bmy_20930T0/1-450 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000361025/1-680 SWMAPEALNF SFSQKSDIWS LGCIILDMTS CSFMDGTEAM HLRKSLRQSP ENSBTAP00000005418/1-644 SWMAPEALSF SFSQKSDIWS LGCIVLDMAS CSFLDTLEAM HLRKSIRSSP ENSTTRP00000007259/1-640 SWMAPEALNF SFSQKSDIWS LGCIILDMAG CSFLDSTEAM LLRKSIRNSP bmy_20930T0/1-450 SWMAPEALNF SFSQKSDIWS LGCIILDMAG CSFLESTEAM LLRKSIRSSP 251 300 ENSP00000361025/1-680 GSLKAVLKTM EEKQIPDVET FRNLLPLMLQ IDPSDRITIK DVVHITFLRG ENSBTAP00000005418/1-644 ASLSGVLRTM EEK-VPDAKT FQALLPLMLQ ADPAERVTVR DVIHFTFVRS ENSTTRP00000007259/1-640 DGLRGVLRTM EERRVPDAEI FSSLLPLMLQ ADPSDRITIR DVIHL-FVSS bmy_20930T0/1-450 DGLRGVLRTT EERRVPGAKI FSSLLPLMLQ ADPSERITIR DLIHLTLVSS 301 350 ENSP00000361025/1-680 SFKSSCVSLT LHRQMVPASI TDMLLEGNVA SILEVMQKFS GWPEVQLRAM ENSBTAP00000005418/1-644 NFRSSSLALV LRRQVVPEFI IDMLLESNVA SIFEVMQNFS SRPEVQHRAL ENSTTRP00000007259/1-640 DFRSSHSALM PHRQVVPDFI IDRLLESNVT SILEVLQNFS SHPEDQQRAL bmy_20930T0/1-450 DFRSSSSALM LHRQVVPEFI IDMLLESNVA STLEVMQSFS SHPEVQQRAM 351 400 ENSP00000361025/1-680 KRLLKMPADQ LGLPWPPELV EVVVTTMELH DRVLDVQLCA CSLLLHLLGQ ENSBTAP00000005418/1-644 KRLLRMPEDQ LGLPWPEELV DVLLTVMKQH QRILDIQLCA CALLLRTMGQ ENSTTRP00000007259/1-640 EKLLGMSEDQ QGVPWPAELA EVLAGTVKQH DRVLDTQPCA CSLLL----- bmy_20930T0/1-450 KRLLRMSEDQ QGVPWPAELV EVLIGIMKQH ERILDIQLCA CSLLLRTLGQ 401 450 ENSP00000361025/1-680 ALVHHPEAKA PCNQAITSTL LSALQSHPEE EPLLVMVYSL LAITTTQESE ENSBTAP00000005418/1-644 ALAQDPAATV ADTGTIAAVL LSILQSHPAE EQLLAMVYSL LTIVASQ--G ENSTTRP00000007259/1-640 PLGQDPAATA PSDSTMAPVP LSV-QSHPKE QQPLVTVHRP LT-VASQ--G bmy_20930T0/1-450 ALGQDPAATV PSDSAITPVL LSVLRSHPEE QQLLVMVYSL LTIVASQ--G 451 500 ENSP00000361025/1-680 SLSEELQNAG LLEHILEHLN SSLKSRDVCA SGLGLLWALL LDGIIVNKAP ENSBTAP00000005418/1-644 LATDELQRAW LFEDILKRLD SLPRSRDICI HGLSLLWALL VDAIIVNKAP ENSTTRP00000007259/1-640 -LPDELRRAR LCECILERLD ALPRNRDTCL NGLRLLWALL VDAVIANKAP bmy_20930T0/1-450 PATDELQRAG LYEHILECLD TFPRNRDICI NGLSLLWALL VDAVIVNKAP 501 550 ENSP00000361025/1-680 LEKVPDLISQ VLATYPADGE MAEASCGVFW LLSLLGCIKE QQFEQVVALL ENSBTAP00000005418/1-644 LERAPALVTE ILVTFPRDAE VAEAGCAVLW LLSLLGCIRE QECAEVVDLL ENSTTRP00000007259/1-640 WEKALALIAE VLATYPTDAE MAEASCAVLW LLSLLGCVGE QQLEEVVVLI bmy_20930T0/1-450 LEKAPALIAE VLATYPTDAE MAEAGCAVLW LLSLLGCMKE QQFEEVVALL 551 600 ENSP00000361025/1-680 LQSIRLCQDR ALLVNNAYRG LASLVKVSEL AAFKVVVQEE GGSGLSLIKE ENSBTAP00000005418/1-644 LQSVRLYQDR VLLVNNAYRG LASLAKVSEL AALQVVLPRE SGSGLDLIQE ENSTTRP00000007259/1-640 LQSIRACQDR ALLVNNACQA LASLAKMSEL AALQVVMPEE GSSGLTLIQE bmy_20930T0/1-450 LQNIRERQDR VLLVNNAYRG LASLAKLSG- ---------E PGDG------ 601 650 ENSP00000361025/1-680 TYQLHRDDPE VVENVGMLLV HLASYEEILP ELVSSSMKAL LQEIKERFTS ENSBTAP00000005418/1-644 TYQLHRDDPE VVESVCLLLA HLGTYKEILS ELASSGIQPL VAEIHGRFTS ENSTTRP00000007259/1-640 TYQLHQDDPE VVENICMLLA HLASHKDILS ELVSSGIQPL VEEIHGRFTS bmy_20930T0/1-450 -----RGCP- ---------- ---------- ---------- ---------- 651 700 ENSP00000361025/1-680 SLVSDSSAFS KPGLPPGGSP QLGCTTSGGL E ENSBTAP00000005418/1-644 SLELVSYTAS MLHRLEAAAQ PS-------- - ENSTTRP00000007259/1-640 S--------- ---------- ---------- - bmy_20930T0/1-450 ---------- ---------- ---------- -