KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:31 2014 Check: 00 .. Name: ENSP00000369335/1-1094 Len: 1124 Check: 5209 Weight: 1.00 Name: ENSBTAP00000005426/1-1045 Len: 1124 Check: 2239 Weight: 1.00 Name: ENSTTRP00000001259/1-1074 Len: 1124 Check: 1914 Weight: 1.00 Name: bmy_00646T0/1-1027 Len: 1124 Check: 8318 Weight: 1.00 Name: BACU001773/1-966 Len: 1124 Check: 8095 Weight: 1.00 // 1 50 ENSP00000369335/1-1094 MSYEVTSGCH WTCQVPESCD NGLHCAGPLG HLHRRCQRTS AHLLVFTEHA ENSBTAP00000005426/1-1045 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001259/1-1074 --------RS LACEVPAPGN DGPSGHLCCL TRNKRVR--- ---LICTESL bmy_00646T0/1-1027 ---------- ---------- ---------- ---------- ---------- BACU001773/1-966 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000369335/1-1094 EMRRFKRKHL TAIDCQHLAR SHLAVTQPFG QRWTNRDPNH GLYPKPRTKR ENSBTAP00000005426/1-1045 -MRRFKRKHL TAIECQHLAR SHLAASQSF- QRWTSRDPNH GLYPRPRTKR ENSTTRP00000001259/1-1074 GMRPFKRKHL TAVDCQHLAR SHLAVTQPFG QRWTNRDPNH GLYPRPRTKR bmy_00646T0/1-1027 ---------- -MCECEHSCT PVRS------ ---------- ---------- BACU001773/1-966 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000369335/1-1094 GSRGQGSQRC IPEFFLAGKQ PCTNDMAKSN SVGQDSCQDS EGDMIFPAES ENSBTAP00000005426/1-1045 GARGQGCLRY SLDFFLAGQQ PCTNDMAKSN SVGQDSSKDS EDEMIFVAGS ENSTTRP00000001259/1-1074 GTRGRGCLGY NPEFFLAGQQ RRTNDMAKSN SVGQDSSKDS EDEMIFAAEG bmy_00646T0/1-1027 ---GRGCPGY NPEFFLAGQQ RCTNDMAKSS SVGQDSSKDS EDEMIFAAEG BACU001773/1-966 ---------- ---------- -----MAKSS SVGQDSSKDS EDEMIFAAEG 151 200 ENSP00000369335/1-1094 SCALPQ--EG SAGPGSPGSA PPSRKRSWSS EEESNQATGT SRWDGVSKKA ENSBTAP00000005426/1-1045 PCALPPGGDG EARLHSSGSA LPARKRSRSL DDERNPAPGT SPWDGVSKKT ENSTTRP00000001259/1-1074 HCALPQGGDG AVRPRSSG-- ----KRSRSF EDERNQATGT SQWDGVSRKT bmy_00646T0/1-1027 HCALPQGGDG AAWPRSSG-- ----KRSRSF EDERNQATGT SQWDGVSRKT BACU001773/1-966 HCALPQGGDG AAWPRSSG-- ----KRSRSF EDERNQATGT SQWDGVSRKT 201 250 ENSP00000369335/1-1094 PRHHLSVPCT RPREARQEAE DSTSRLSAES GETDQDAGDV GPDPIPDSYY ENSBTAP00000005426/1-1045 PWHHSSPSCT RPREARPEAE VGVGQLTVQP GEPSQEVEDL GPDPVPDSHY ENSTTRP00000001259/1-1074 PRHHLSLSCR RPRE-RQEAE DGVSWFSAHP GESSQEVEDI GPDPVPDSYY bmy_00646T0/1-1027 PRHHLSLSCT RPREGRQEAE DGVSWFSAQP GESSQEVEDI GPDPVPDSYY BACU001773/1-966 PRHHLSLSCT RPREGRQEAE DGASWFSAQP GESSQEVEDI GPDPVPDSYY 251 300 ENSP00000369335/1-1094 GLLGTLPCQE ALSHICSLPS EVLRHVFAFL PVEDLYWNLS LVCHL-WREI ENSBTAP00000005426/1-1045 GLLGTLPCQE PPSHICSLPS EVLRHIFAFL PVEDLYWNLS LVCRL-WREV ENSTTRP00000001259/1-1074 GLLGS-PCQE PQSHICSLPS EV--HIFAFL PXXXXXXXXX XXXXXXXXXX bmy_00646T0/1-1027 GLLGTLPCQE PQSHICSLPS EVLRHIFAFL PMEDLYWNLS LVCHF-WREI BACU001773/1-966 GLLGTSPCQE PQSHICSLPS EVLRHIFAFL PMEDLYWNLS LVCHF-WREI 301 350 ENSP00000369335/1-1094 ISDPLFIPWK KLYHRYLMNE EQAVSKVDGI LSNCGIEKES DLCVLNLIRY ENSBTAP00000005426/1-1045 ISDPLFIPWK KLYHRYLMNE EQAVSKVDGI LSSYGIEKES DLCVLNLIRY ENSTTRP00000001259/1-1074 XXXXXFIPWK KLYHRYLMNE EQAVSKVDGI LSSYGIEKES DLCVLNLIRY bmy_00646T0/1-1027 ISDPLFIPWK KLYHRYLMNE EQAVSKVDGI LSSYGIEKES DLCVLNLIRY BACU001773/1-966 ISDPLFIPWK KLYHQYLMNE EQAVSKVDGI LSSYGIEKES DLCVLNLIRY 351 400 ENSP00000369335/1-1094 TATTKCSPSV DPERVLWSLR DHPLLPEAEA CVRQHLPDLY AAAGGVNIWA ENSBTAP00000005426/1-1045 TATTKCSPSV DPGQALWSLR DHLLLPEAEA CVRQHLPDLC AAPAGVNVWA ENSTTRP00000001259/1-1074 TATTKCSPSV DPGRALWSLR DHLLLPEAEA CVRQHLPDLY AAPAGVNVWA bmy_00646T0/1-1027 TATTKCSPSV DPGRALWSLR DHLLLPEAEA CVRQHLPDLY AAPAGVNVWA BACU001773/1-966 TATSKCSPSV DPGRALWSLR DHLLLPEAEA CVRQHLPDLY AAPAGVNVWA 401 450 ENSP00000369335/1-1094 LVAAVVLLSS SVNDIQRLLF CLRRPSSTVT MPDVTETLYC IAVLLYAMRE ENSBTAP00000005426/1-1045 LVAAIVLLSS SVSDIQQLLF CLRRPSSTVT VPDVTETLYC IAVLLYAMRE ENSTTRP00000001259/1-1074 LVAAIILLSS SVNDIQQLLF CLRRPSSTVT MPDITETLYC IAVLLYAMRE bmy_00646T0/1-1027 LVAAIVLLSS SVNDIQQLLF CLRRPSSTVT MPDITETLYC IAVLLYAMRE BACU001773/1-966 LVAAIVLLSS SVNDIQQLLF CLRRPSSTVT MPDITETLYC IAVLLYAMRE 451 500 ENSP00000369335/1-1094 KGINISNRIH YNIFYCLYLQ ENSCTQATKV KEEPSVWPGK K-TIQLTHEQ ENSBTAP00000005426/1-1045 KGISISNRIH YNIFYCLYLQ ENSCAQASGD KEEPSVWPGK KTTIQLTHEQ ENSTTRP00000001259/1-1074 KGINISNRIH YNIFYCLYLQ ENSCAQATEV KEEPSVWPGK KTTIQLTHEQ bmy_00646T0/1-1027 KGINISNRIH YNIFYCLYLQ ENSCAQATEV KEEPSVWPGK KTTIQLTHEQ BACU001773/1-966 KGINISNRIH YNIFYCLYLQ ENSCAQATEV KEEPSVWPGK KTTIQLTHEQ 501 550 ENSP00000369335/1-1094 QLILNHKMEP LQVVKIMAFA GTGKTSTLVK YAEKWSQSRF LYVTFNKSIA ENSBTAP00000005426/1-1045 QLILSHKMEP LQVVKIMAFA GTGKTSTLVK YAEKWSQSRF LYVTFNKSIA ENSTTRP00000001259/1-1074 QLILSHKMEP LQVVKIMAFA GTGKTSTLVK YAEKWSESRF LYVTFNKSIA bmy_00646T0/1-1027 QLILSHKMEP LQVVKIMAFA GTGKTSTLVK YAEKWSESRF LYVTFNKSIA BACU001773/1-966 QLILSHKMEP LQVVKIMAFA GTGKTSTLVK YAEKWSESRF LYVTFNKSIA 551 600 ENSP00000369335/1-1094 KQAERVFPSN VICKTFHSMA YGHIGRKYQS KKKLNLFKLT PFMVNSVLAE ENSBTAP00000005426/1-1045 KQAERVFPSN VICKTFHSMA YGHIGRKYQL KKKLNLFKLT PFMVNSVLTE ENSTTRP00000001259/1-1074 KQAELVFPSN VICKTFHSMA YGHIGRKYQL KKKLNLFKLT PFMVNSVLAE bmy_00646T0/1-1027 KQAELVFPSN VICKTFHSMA YGHIGRKYQL KKKLNLFKLT PFMVNSVLAE BACU001773/1-966 KQAELVFPSN VICKTFHSMA YGHIGRKYQL KKKLNLFKLT PFMVNSVLAE 601 650 ENSP00000369335/1-1094 GKGGFIRAKL VCKTLENFFA SADEELTIDH VPIWCKNSQG QRVMVEQSEK ENSBTAP00000005426/1-1045 GKGGFIRAKL VCKTLENFFA SADEELTIDH VPIWCKNTQG QRVMVEQSEK ENSTTRP00000001259/1-1074 GKGGFIRAKL VCKTLENFFA SADDELTIDH VPIWCKNSQG QRVMVEQSEK bmy_00646T0/1-1027 GKGGFIRAKL VCKTLENFFA SADDELTIDH VPIWCKNSQG QRVMVEQSEK BACU001773/1-966 GRGGFIRAKL VCKTLENFFA SADDELTIDH VPIWCKNSQG QRVMVEQSEK 651 700 ENSP00000369335/1-1094 LNGVLEASRL WDNMRKLGEC TEEAHQMTHD G--------- ---------- ENSBTAP00000005426/1-1045 LNGVLEASRL WDNMRKLGEC REEAYHMTHD G--------- ---------- ENSTTRP00000001259/1-1074 LNGVLEASRL WDNMRKLGEC KEEAYHMTHD G--------- ---------- bmy_00646T0/1-1027 LNGVLEASRL WDNMRKLGEC KEEAYHMTHD GTHAPSPEPH RGPSSFRFLT BACU001773/1-966 LNGVLEASRL WDNMRKLGEC KEEAYHMTHD G--------- ---------- 701 750 ENSP00000369335/1-1094 -------YLK LWQLSKPSLA SFDAIFVDEA QDCTPAIMNI VLSQPCGKIF ENSBTAP00000005426/1-1045 -------YLK LWQLSKPLLA SFDAIFVDEA QDCTPAIMNI VLSQPCGKIF ENSTTRP00000001259/1-1074 -------YLK LWQLSKPLLA SFDAIFVDEA QDCTPAIMNI VLSQPCGKIF bmy_00646T0/1-1027 LLPLLVGYLK LWQLSKPLLA SYDAIFVDEA QDCTPAIMNI VLSQPCGKIF BACU001773/1-966 -------YLK LWQLSKPLLA SFDAIFVDEA QDCTPAIMNI VLSQPCGKIF 751 800 ENSP00000369335/1-1094 VGDPHQQIYT FRGAVNALFT VPHTHVFYLT QSFRFGVEIA YVGATILDVC ENSBTAP00000005426/1-1045 VGDPHQQIYT FRGAVNALFT VPHTHVFYLT QSFRFGVEIA YVGATILDVC ENSTTRP00000001259/1-1074 VGDPHQQIYT FRGAVNALFT VPHTHVFYLT QSFRFGVEIA YVGATILDVC bmy_00646T0/1-1027 VGDPHQQIYT FRGAVNALFT VPHTHVFYLT QSFRFGVEIA YVGATILDVC BACU001773/1-966 VGDPHQQIYT FRGAVNALFT VPHTHVFYLT QSFRFGVEIA YVGATILDVC 801 850 ENSP00000369335/1-1094 KRVRKKTLVG GNHQSGIRGD AKGQVALLSR TNANVFDEAV RVTEGEFPSR ENSBTAP00000005426/1-1045 KRVRRKTLVG GNHQSGIRGD SKGQVALLSR TNANVFDEAV RVTEGEVPAR ENSTTRP00000001259/1-1074 KRVRKKTLVG GNHQSGIRGD TKGQVALLSR TNANVFDEAV RVTEGEVPAR bmy_00646T0/1-1027 KRVRKKTLVG GNHQSGIRGD TKGQVALLSR TNANVFDEAV RVTEGEVPAR BACU001773/1-966 KRVRKKTLVG GNHQSGIRGD TKGQVALLSR TNANVFDEAV RVTEGEVPAR 851 900 ENSP00000369335/1-1094 IHLIGGIKSF GLDRIIDIWI LLQPEEERRK QNLVIKDKFI RRWVHKEGFS ENSBTAP00000005426/1-1045 IHLIGGIKSF GLDRIIDIWT LLQPEEERKK RNLIIKDKFI RRWAHKEGFS ENSTTRP00000001259/1-1074 IHLIGGIKSF GLDRIIDIWT LLQPEEERKR RNLVIKDRFI RRWVHREGFS bmy_00646T0/1-1027 IHLIGGTKSF GLDRIIDIWT LLQPEEERKR RNLVIKDRFI RRWVHREGFS BACU001773/1-966 IHLIGGIKSF GLDRIIDIWT LLQPEEERKR RNLVIKDRFI RRWVHKEGFS 901 950 ENSP00000369335/1-1094 GFKRYVTAAE DKELEAKIAV VEKYNIRIPE LVQRIEKCHI EDLDFAEYIL ENSBTAP00000005426/1-1045 GFKRYVTAAE DKELEAKIAV VEKYNIRIPE LVARIERCHI EDLDFAEYIL ENSTTRP00000001259/1-1074 GFKRYVTAAE DKELEAKIAV VEKYNIRIPE LVERIERCHI EDLDFAEYIL bmy_00646T0/1-1027 GFKRYVTAAE DKELEAKIAV VEKYNIRIPE LVERIERCHI EDLDFAEYIL BACU001773/1-966 GFKRYVTAAE DKELEAKIAV VEKYNIRIPE LVERIERCHI EDLDFAEYIL 951 1000 ENSP00000369335/1-1094 GTVHKAKGLE FDTVHVLDDF VKVPCARHNL PQLPHFRVES FSEDEWNLLY ENSBTAP00000005426/1-1045 GTVHKAKGLE FDTVHVLDDF VKVPCARHNL AQLPHFRVES FSEDEWNLLY ENSTTRP00000001259/1-1074 GTVHKAKGLE FDTVHVLDDF VKVPCARHNL AQLPHFRVES FSEDEWNLLY bmy_00646T0/1-1027 GTVHKAKGLE FDTVHVLDDF VKVPCARHNL AQLPHFRVES FSEDEWNLLY BACU001773/1-966 GTVHKAKGLE FDTVHVLDDF VKVPCARHNL AQLPHFRVES FSEDEWNLLY 1001 1050 ENSP00000369335/1-1094 VAVTRAKKRL IMTKSLENIL TLAGEYFLQA ELTSNVLKTG VVRCCVGQCN ENSBTAP00000005426/1-1045 VAVTRAKKRL IMTRSLENIL TLAGEYFLQA ELTSNVLKTG VVRCCVGQCS ENSTTRP00000001259/1-1074 VAVTRARKRL IMTRSLENIL TLAGEYFLQA ELTSNVLKTG VVRCCVGQCS bmy_00646T0/1-1027 VAVTRARKRL IMTRSLENIL TLAGEYFLQA ELTSNVLKTG VVRCCVGQCS BACU001773/1-966 VAVTRARKRL IMTRSLENIL TLAGEYFLQA ELTSNVLKTG VVRCCVGQCS 1051 1100 ENSP00000369335/1-1094 NAIPVDTVLT MKKLPITYSN RKENKGGYLC HSCAEQRIGP LAFLTASPEQ ENSBTAP00000005426/1-1045 NAIPVDAALT MRKLPITYSN RKENKGGYLC HSCVEQRIGP LAFLTASPEQ ENSTTRP00000001259/1-1074 NAIPMDTVLT MRKLPITYSN RKENKGGYLC HSCAEQRIGP LAFLTASPEQ bmy_00646T0/1-1027 NAIPMDTVLT MRKLPITYSN RKENKGGYLC HSCAEQRIGP LAFLTASPEQ BACU001773/1-966 NTIPMDTVLT MQKLPITYSN RKENKGGYLC HSCAEQRIGP LAFLTASPEQ 1101 1150 ENSP00000369335/1-1094 VRAMERTVEN IVLPRHEALL FLVF ENSBTAP00000005426/1-1045 VRAMVRTVEN VVLPRHEALL FLVF ENSTTRP00000001259/1-1074 VRAMDRTVEN IVLPRHEALL FLVF bmy_00646T0/1-1027 VRAMDRTVEN IVLPRHEALL FLVF BACU001773/1-966 VRAMDRTVEN IVLPRHEALL FLVF