KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:32 2014 Check: 00 .. Name: bmy_04971T0/1-851 Len: 1044 Check: 7413 Weight: 1.00 Name: ENSTTRP00000016293/1-982 Len: 1044 Check: 6237 Weight: 1.00 Name: ENSP00000376705/1-920 Len: 1044 Check: 2397 Weight: 1.00 Name: ENSBTAP00000005430/1-920 Len: 1044 Check: 2620 Weight: 1.00 Name: BACU000935/1-308 Len: 1044 Check: 8274 Weight: 1.00 // 1 50 bmy_04971T0/1-851 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016293/1-982 GRIPSPSVDS FYFYXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000376705/1-920 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005430/1-920 ---------- ---------- ---------- ---------- ---------- BACU000935/1-308 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_04971T0/1-851 --------MD SLMLEAVAVT TARRGTLH-V AGGLGVGLGE ESLRILVGTE ENSTTRP00000016293/1-982 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX AKDVNILFDE LEAVNSPCKD ENSP00000376705/1-920 ---------- -MEASSSGIT NGKTKVFHPV AKDVNILFDE LEAVSSPCKD ENSBTAP00000005430/1-920 ---------- -METSSSGIT NGRTRVFHPV AKDVNILFDE LEAVNSPCKD BACU000935/1-308 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_04971T0/1-851 GDSLLLMDIN TTETEASEPW D--------- -----YVLVA GRCT------ ENSTTRP00000016293/1-982 DDSLLHPGNL TSTSDDASRL EAGGETVPEK NKSNGLYFRD GKCRIDYILV ENSP00000376705/1-920 DDSLLHPGNL TSTSDDASRL EAGGETVPER NKSNGLYFRD GKCRIDYILV ENSBTAP00000005430/1-920 DDSLLHPGNL TSTSDDASRL EAGGETVPEK NKLNGLYFRD GKCRIDYILV BACU000935/1-308 ---------- ---------- ---------- ---------- ---------- 151 200 bmy_04971T0/1-851 -QRSPRQVQR QQQFLGELER KGFCYKARE- --DQEKVFFG IRADNRVFDR ENSTTRP00000016293/1-982 YRKSNPQMEK REIFERNIRA EGLQMEKESS LINSDIIFVK LHAPWEVLGR ENSP00000376705/1-920 YRKSNPQTEK REVFERNIRA EGLQMEKESS LINSDIIFVK LHAPWEVLGR ENSBTAP00000005430/1-920 YRKSNPQMEK REVFERNIRA EGLQMEKESS LINSDIIFVK LHAPWEVLGR BACU000935/1-308 ---------- ---------- ---------- ---------- ---------- 201 250 bmy_04971T0/1-851 Y--------- ---------- ---------- -----RRLLM EPEATAPRGE ENSTTRP00000016293/1-982 YAEQMNVRMP FRRKIYYLPR RYKFMSRIDK QISSFRRWLP KKPMRLDKET ENSP00000376705/1-920 YAEQMNVRMP FRRKIYYLPR RYKFMSRIDK QISRFRRWLP KKPMRLDKET ENSBTAP00000005430/1-920 YAEQMNVRMP FRRKIYYLPR RYKFMSRIDK QISRFRRWLP KKPMRLDKET BACU000935/1-308 ---------- ---------- ---------- ---------- ---------- 251 300 bmy_04971T0/1-851 LA-------- ---------- ------RPTS IPATTRIRIV NFVLNS-KMA ENSTTRP00000016293/1-982 LPDLEENDCY TAPFSQQRIH HFIIHNKDTF FNNATRSRIV HHILQRIKYE ENSP00000376705/1-920 LPDLEENDCY TAPFSQQRIH HFIIHNKETF FNNATRSRIV HHILQRIKYE ENSBTAP00000005430/1-920 LPDLEENDCY TAPFSQQRIH HFIIHNKDTF FNNATRSRIV HHILQRIKYE BACU000935/1-308 ---------- ---------- ---------- ---------- ---------- 301 350 bmy_04971T0/1-851 AGDT---LQD LVKDGVFEAG FPLHKGEEDL KKK------- ---------W ENSTTRP00000016293/1-982 EGKNKIGLNR LLTNGSYEAA FPLHEGSYRS KNSIRTHGAV NHRHLLHECW ENSP00000376705/1-920 EGKNKIGLNR LLTNGSYEAA FPLHEGSYRS KNSIRTHGAE NHRHLLYECW ENSBTAP00000005430/1-920 EGKNKIGLNR LLTNGSYEAA FPLHEGSYRS KNSIRTHGAV NHRHLLYECW BACU000935/1-308 ---------- ---------- ---------- ---------- ---------- 351 400 bmy_04971T0/1-851 ARWRNMFQQQ PIGDIRNYFG EKVALYFAWL GWYTYMLVPA AVVGLIIFLS ENSTTRP00000016293/1-982 ASWGVWYKYQ PLDLVRRYFG EKIGLYFAWL GWYTGMLFPA AFIGLFVFLY ENSP00000376705/1-920 ASWGVWYKYQ PLDLVRRYFG EKIGLYFAWL GWYTGMLFPA AFIGLFVFLY ENSBTAP00000005430/1-920 ASWGVWYKYQ PLDLVRRYFG EKIGLYFAWL GWYTGMLFPA AFIGLFVFLY BACU000935/1-308 ---------- ---------- ---------- ---------- ---------- 401 450 bmy_04971T0/1-851 GFAHFEASQI SREICEAHDV YMCPRGDHNP RYQRLSETCA FAKLTHLFDN ENSTTRP00000016293/1-982 GVITLDHCQV SKEVCQATDI IMCPVCDKYC PFMRLSDSCV YAKVTHLFDN ENSP00000376705/1-920 GVTTLDHSQV SKEVCQATDI IMCPVCDKYC PFMRLSDSCV YAKVTHLFDN ENSBTAP00000005430/1-920 GVITLDHCQV SKEVCQATDI IMCPVCDKYC PFMRLSDSCV YAKVTHLFDN BACU000935/1-308 ---------- ---------- ---------- ---------- ---------- 451 500 bmy_04971T0/1-851 EGTVLFAMFM ALWGESLRHL GGSRAPHAAG THREGLCFLP AAATVFLELW ENSTTRP00000016293/1-982 GATVFFAVFM AVW------- ---------- ---------- --ATVFLEFW ENSP00000376705/1-920 GATVFFAVFM AVW------- ---------- ---------- --ATVFLEFW ENSBTAP00000005430/1-920 GATVFFAVFM AVW------- ---------- ---------- --ATVFLEFW BACU000935/1-308 ---------- ---------- ---------- ---------- ---------- 501 550 bmy_04971T0/1-851 KRERARVVLQ WDLYGWDEDQ EEMALGLTAC PDYQPRLHQ- -------HSY ENSTTRP00000016293/1-982 KRRRAVIAYD WDLIDWEEEE EEIRPQFEAK YSKKERMNPI SGKPEPYQAF ENSP00000376705/1-920 KRRRAVIAYD WDLIDWEEEE EEIRPQFEAK YSKKERMNPI SGKPEPYQAF ENSBTAP00000005430/1-920 KRRRAVIAYD WDLIDWEEEE EEIRPQFEAK YSKKERMNPI SGKPEPYQAF BACU000935/1-308 ---------- ---------- ---------- ---------- ---------- 551 600 bmy_04971T0/1-851 MRSTVILLLS ----LLMICL MIGMAHVLVV YRVLAAALFS S-AFPFLGEQ ENSTTRP00000016293/1-982 ADKCSRLIVS ASGIFFMICV VIAAVFGIVI YRVVTVSTFA AFKWALIRNN ENSP00000376705/1-920 TDKCSRLIVS ASGIFFMICV VIAAVFGIVI YRVVTVSTFA AFKWALIRNN ENSBTAP00000005430/1-920 ADKCSRLIVS ASGIFFMICV VIAAVFGIVI YRVVTVSTFA AFKWALIRNN BACU000935/1-308 ---------- ---------- ---------- ---------- ---------- 601 650 bmy_04971T0/1-851 VTTAVVVTGA LVHYVSILVM TKINKYVALK LCDFEKPRTF SERESKFTIK ENSTTRP00000016293/1-982 SQVATTGTAV CINFCIIMLL NVLYEKVALL LTNLEQPRTE SEWENSFTLK ENSP00000376705/1-920 SQVATTGTAV CINFCIIMLL NVLYEKVALL LTNLEQPRTE SEWENSFTLK ENSBTAP00000005430/1-920 SQVATTGTAV CINFCIIMLL NVLYEKVALL LTNLEQPRTE SEWENSFTLK BACU000935/1-308 ---------- ---------- ---------- ---------- ---------- 651 700 bmy_04971T0/1-851 FFTLQFFAHF SSLIYIAFIL GRINGNPGKS VRLAGLWKLE ECHLSGCMMD ENSTTRP00000016293/1-982 MFLFQFVNLN SSTFYIAFFL GRFTGHPGAY LRLINRWRLE ECHPSGCLID ENSP00000376705/1-920 MFLFQFVNLN SSTFYIAFFL GRFTGHPGAY LRLINRWRLE ECHPSGCLID ENSBTAP00000005430/1-920 MFLFQFVNLN SSTFYIAFFL GRFTGHPGAY LRLINRWRLE ECHPSGCLID BACU000935/1-308 ---------- ---------- ---------- ---------- ---------- 701 750 bmy_04971T0/1-851 LFVQMAIIMG LKQTLSNCME YLGP-----W LAHKCRSMRA TSQDPELRHW ENSTTRP00000016293/1-982 LCMQMGIIMV LKQTWNNFME LGYPLIQNWW TRRKVRQEHG PERKLSFPQW ENSP00000376705/1-920 LCMQMGIIMV LKQTWNNFME LGYPLIQNWW TRRKVRQEHG PERKISFPQW ENSBTAP00000005430/1-920 LCMQMGIIMV LKQTWNNFME LGYPLIQNWW TRRKVRQEHG PERKISFPQW BACU000935/1-308 --MQMGIIMV LKQTWNNFME LGYPLIQNWW TRRKVRQERG PERKLSFPQW 751 800 bmy_04971T0/1-851 QCNYRLNPVD TFSLFGEFME MMIQYGFTTV FVAAFPLAPL LALFSNLAEI ENSTTRP00000016293/1-982 EKDYNLQPMN AYGLFDEYLE MILQFGFTTI FVAAFPLAPL LALLNNIIEI ENSP00000376705/1-920 EKDYNLQPMN AYGLFDEYLE MILQFGFTTI FVAAFPLAPL LALLNNIIEI ENSBTAP00000005430/1-920 EKDYNLQPMN AYGLFDEYLE MILQFGFTTI FVAAFPLAPL LALLNNIIEI BACU000935/1-308 EKDYNLQPMN AYGLFDEYLE MILQFGFTTI FVAAFPLAPL LALLNNIIEI 801 850 bmy_04971T0/1-851 RLDAIKMVRL QRRLVPRKAK DI-GTWLQVL QIIGVLAVIA NGMVIAFTSE ENSTTRP00000016293/1-982 RLDAYKFVTQ WRRPLASRAK DIXXXXXXXX XXXXXXXXXX SAFVIAITSD ENSP00000376705/1-920 RLDAYKFVTQ WRRPLASRAK DI-GIWYGIL EGIGILSVIT NAFVIAITSD ENSBTAP00000005430/1-920 RLDAYKFVTQ WRRPLASRAK DI-GIWYGIL EGIGILSVIT NAFVIAITSD BACU000935/1-308 RLDAYKFVTQ WRRPLASRAK DI-GIWYGIL EGIGILSVIT NAFVIAITSD 851 900 bmy_04971T0/1-851 FIPRVVYKYR YGPCRQGAHP AVDCLTGYVN HSLSVFYTKD FQNPVEIE-- ENSTTRP00000016293/1-982 FIPRLVYAYK YGPCAGQGEA GQKCMVGYVN ASLSVFRISD FENRSEPESD ENSP00000376705/1-920 FIPRLVYAYK YGPCAGQGEA GQKCMVGYVN ASLSVFRISD FENRSEPESD ENSBTAP00000005430/1-920 FIPRLVYAYK YGPCAGQGEA GQKCMVGYVN ASLSVFRISD FENRSEPESD BACU000935/1-308 FIPRLVYAYK YGPCAGQGEA GQKCMVGYVN ASLSVFRISD FENRSEPESD 901 950 bmy_04971T0/1-851 GSENVTE--- -CRYRDYGAA QNS----SFT EQSWFLLAIR LAFLILFEHV ENSTTRP00000016293/1-982 GSEFSGTPLK YCRYRDYRDP PHSLVPYGYT LQFWHVLAAR LAFIIVFEHL ENSP00000376705/1-920 GSEFSGTPLK YCRYRDYRDP PHSLVPYGYT LQFWHVLAAR LAFIIVFEHL ENSBTAP00000005430/1-920 GSEFSGTPLK YCRYRDYRDP PHSLVPYGYT LQFWHVLAAR LAFIIVFEHL BACU000935/1-308 GSEFSGTPLK YCRYRDYRDP PHSLVPYGYT LQFWHVLAAR LAFIIVFEHL 951 1000 bmy_04971T0/1-851 ALCVKLIAAW FVPDVPQSVK NEVLKKKH-- -QRLGEAGLP GPGVGPGPES ENSTTRP00000016293/1-982 VFCIKHLISY LIPDLPKDLR DRMRREKYLI QEMMYEAEL- ---------E ENSP00000376705/1-920 VFCIKHLISY LIPDLPKDLR DRMRREKYLI QEMMYEAEL- ---------E ENSBTAP00000005430/1-920 VFCIKHLISY LIPDLPKDLR DRMRREKYLI QEMMYEAEL- ---------E BACU000935/1-308 VFCIKHLISY LIPDLPKDLR DRMRREKYLI QEMMYEAEL- ---------E 1001 1050 bmy_04971T0/1-851 RSTRDSGPRA QTWSGPTAGQ EAKTQSCCHH RPPQPWLCVC VGGL ENSTTRP00000016293/1-982 RLQKER---- ---------K ERKKNGKAHH ---NEWP--- ---- ENSP00000376705/1-920 RLQKER---- ---------K ERKKNGKAHH ---NEWP--- ---- ENSBTAP00000005430/1-920 RLQKER---- ---------K ERKKNGKAHH ---NEWP--- ---- BACU000935/1-308 RLQKER---- ---------K ERKKNGKAHH ---NEWP--- ----