KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:33 2014 Check: 00 .. Name: ENSTTRP00000001805/1-681 Len: 686 Check: 7483 Weight: 1.00 Name: bmy_09984T0/1-550 Len: 686 Check: 8792 Weight: 1.00 Name: ENSP00000415243/1-684 Len: 686 Check: 3014 Weight: 1.00 Name: BACU017825/1-643 Len: 686 Check: 1962 Weight: 1.00 Name: ENSBTAP00000005438/1-685 Len: 686 Check: 2347 Weight: 1.00 // 1 50 ENSTTRP00000001805/1-681 MENLQTNFSL VQGSNKKLNG MGDDGSPPVK KMMTDIHANG KMMVNKMPTV bmy_09984T0/1-550 MENLQTNFSL VQGSNTKLNG MGDDGSPPVK KMMIDIHANG KMMINKIPTV ENSP00000415243/1-684 MENLQTNFSL VQGSTKKLNG MGDDGSPPAK KMITDIHANG K-TINKVPTV BACU017825/1-643 ---------- ---------- MGDDGSPPVK KMMTDIHANG KMMINKMPTV ENSBTAP00000005438/1-685 MENLQTNFSL VQSLNKKLNG MEDDGSPPVK KMMTDIHANG KMMINKLPAV 51 100 ENSTTRP00000001805/1-681 KKEHLDDY-E APMETDEEHV KRTCASVPEP LHLNPSLKHT LAQFHLSSQS bmy_09984T0/1-550 KKEHLDDY-E APMETDEEHA KRTCASVPEP LHLNPSLKHT LAQFHFSSQR ENSP00000415243/1-684 KKEHLDDYGE APVETDGEHV KRTCTSVPET LHLNPSLKHT LAQFHLSSQS BACU017825/1-643 KKEHLDDY-E APMETDEEHV KRTCASVPEP LHLNPSLKHT LAQFHLSSQS ENSBTAP00000005438/1-685 KKEHLDDY-E TPMETDEEHV KRTCASVPEP LHLNPSLKHT LAQFHLSSQS 101 150 ENSTTRP00000001805/1-681 SLGGPAAFSA RYSQESMSPT VFLPLPSPQV LPGPLLIPSD SSTELTQTVL bmy_09984T0/1-550 SLGGPAAFSA WYSQESMSPT VFLPLPSPQV LPGPLLIPSD SSTELTQTVL ENSP00000415243/1-684 SLGGPAAFSA RHSQESMSPT VFLPLPSPQV LPGPLLIPSD SSTELTQTVL BACU017825/1-643 SLGGPAAFSA RYSQESMSPT VFLPLPSPQV LPGPLLIPSD SSTELTQTVL ENSBTAP00000005438/1-685 SLGGPAAFSA RYSQESMSPT VFLPLPSPQI LPGPLLIPSD SSTELTQTLL 151 200 ENSTTRP00000001805/1-681 EGESISCFQV GGEKRLCLPQ VLNSVLREFS LQQINTVCDE LYIYCSRCTS bmy_09984T0/1-550 EGESISCFQV GEEKRLFAP- ---------- ------ICDE LYIYCSRCTS ENSP00000415243/1-684 EGESISCFQV GGEKRLCLPQ VLNSVLREFT LQQINTVCDE LYIYCSRCTS BACU017825/1-643 EGESISCFQV GGEKRLCLPQ VLNSVLREFS LQQINTVCDE LYIYCSRCTS ENSBTAP00000005438/1-685 EGESISCFQV GGEKRLCLPQ VLNSVLREFS LQQINTVCDE LYIYCSRCTS 201 250 ENSTTRP00000001805/1-681 DQLHILKVLG ILPFNAPSCG LITLTDAQRL CNALLRPRTF PQNGSILPAK bmy_09984T0/1-550 DHLHILKVLG ILPFNAPSCG LITLTDAQRL CNALLRPHTF PQNGSILPAK ENSP00000415243/1-684 DQLHILKVLG ILPFNAPSCG LITLTDAQRL CNALLRPRTF PQNGSVLPAK BACU017825/1-643 DQLHILKVLG ILPFNAPSCG LITLTDAQRL CNALLRPRTF PQNGSILPAK ENSBTAP00000005438/1-685 DQLHILKVLG ILPFNAPSCG LITLTDAQRL CNALLRPRTF PQNGSILPAK 251 300 ENSTTRP00000001805/1-681 NSLAQLKETG SAFEVEHE-L GKCQGL-APQ FY-QPDXXXX XXXXXXXXXX bmy_09984T0/1-550 NSLAQLKVTG SAFEVEHECL GKCQDLFAPQ FYVQPDAPCI SA---SGVLW ENSP00000415243/1-684 SSLAQLKETG SAFEVEHECL GKCQGLFAPQ FYVQPDAPCI QCLECCGMFA BACU017825/1-643 SSLAQLKETG SAFEVEHECL GKCQGLFAPQ FYVQPDAPCI QCLECCGMFA ENSBTAP00000005438/1-685 NSLAQLKETG SAFEVEHECL GKCQGLFAPQ FYVQPDAPCI QCLECCGMFA 301 350 ENSTTRP00000001805/1-681 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_09984T0/1-550 -NTFVMHSHR SPDKRTCHWG FESAKWHCYL HVNQKYLGTP EEKKLKIILE ENSP00000415243/1-684 PQTFVMHSHR SPDKRTCHWG FESAKWHCYL HVNQKYLGTP EEKKLKIILE BACU017825/1-643 PQTFVMHSHR SPDKRTCHWG FESAKWHCYL HVNQKYLGTP EEKKLKI--- ENSBTAP00000005438/1-685 PQTFVMHSHR SPDKRTCHWG FESAKWHCYL HVNQKYLGTP EEKKLKIILE 351 400 ENSTTRP00000001805/1-681 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_09984T0/1-550 EMKEKFSMRN GKRTQSKIDT PPGVELQSRY PVIKQEGDHV SQTHSFLHPS ENSP00000415243/1-684 EMKEKFSMRS GKRNQSKTDA PSGMELQSWY PVIKQEGDHV SQTHSFLHPS BACU017825/1-643 ---------- --------DT PPGMELQSWY PVIKQEGDHV SQTHSFLHPS ENSBTAP00000005438/1-685 EMKEKFSMRN GKRTQSKIDT PPGMELQSWY PVIKQEGDHV SQTHSFLHPS 401 450 ENSTTRP00000001805/1-681 YYLYMCDKVV APNVSLTSAV SQPKEVTKTE ASRSIPRHSE KPHSSGKLQK bmy_09984T0/1-550 YYLYMCDKVV APNVWLTSA- --PKEVTKTE ASRSILRHSE KPHSSGKHQK ENSP00000415243/1-684 YYLYMCDKVV APNVSLTSAV SQSKELTKTE ASKSISRQSE KAHSSGKLQK BACU017825/1-643 YYLYMCDKVV APNVSLTSAV SQPKEVTKTE ASRSIPRHSE KPHSSGKHQK ENSBTAP00000005438/1-685 YYLYMCDKVV APNVSLTSAV PQPKEVTKTE ASKSIPRQSE KPHSSGKHQK 451 500 ENSTTRP00000001805/1-681 IVSYPDVSLE EQEKMDLKTS RELYSRL-DP SVSNNSTSKK KPEPTTCNLA bmy_09984T0/1-550 TVSYPDVSLE EQEKMDLKTS RELYSHL-DP SVSNNSTSKK KPESTTCNLA ENSP00000415243/1-684 TVSYPDVSLE EQEKMDLKTS RELCSRL-DA SISNNSTSKR KSESATCNLV BACU017825/1-643 IVSYPDVSLE EQEKMDLKTS RELYSRL-DP SVSNNSASKK KPEPTTCNLA ENSBTAP00000005438/1-685 IVSYPDVSLE EQEKMDLKAS KELYSHLEDP SVSNNATSKK KPESTTCSLA 501 550 ENSTTRP00000001805/1-681 RDTGKAGTDR DAAASSPLLV KDVICEDDKG KIMEEVMRTY VKQQEKLNSI bmy_09984T0/1-550 RDTSKAGIDR DAAASSPLLV KDVICEDDXG KIMEEVMRTY VKQQEKLNSI ENSP00000415243/1-684 RDINKVGIGL VAAASSPLLV KDVICEDDKG KIMEEVMRTY LKQQEKLNLI BACU017825/1-643 RDTSKAGIDR DAAASSPLLV KDVICEDDKG KIMEEVMRTY VKQQEKLNSI ENSBTAP00000005438/1-685 RDTSKSGTDC DVAASSPLLV KDVTCEDDKG KIMEEVVRTY VKQQEKLNSI 551 600 ENSTTRP00000001805/1-681 LQKKQQLQME VEMLSSSKAM KELTEEQQNL QKELESLQNE HAQRMEEFYV bmy_09984T0/1-550 LQKXQQLQME VEMLSSSKAV KELPEE---- ---------- ---------- ENSP00000415243/1-684 LQKKQQLQME VKMLSSSKSM KELTEEQQNL QKELESLQNE HAQRMEEFYV BACU017825/1-643 LQKKQQLQME VEMLSSSKAM KELTEEQQNL QKELESLQNE HAQRMEEFYV ENSBTAP00000005438/1-685 LQKKQQLQME VEMLSSSKAM KELTEEQQNL QKELESLQNE HAQRMEEFYV 601 650 ENSTTRP00000001805/1-681 EQKDLEKKLE QVMKQKCTCD SNLEKDKEAE YAAQLAELRQ RLDHAEADRQ bmy_09984T0/1-550 ---------- ---------- ---------- ---------- ---------- ENSP00000415243/1-684 EQKDLEKKLE QIMKQKCTCD SNLEKDKEAE YAGQLAELRQ RLDHAEADRQ BACU017825/1-643 EQKDLEKKLE QVMKQKCTCD SNLEKDKEAE YAAQLAELRQ RLDHAEADRQ ENSBTAP00000005438/1-685 EQKDLEKKLE QVMKQKCTCD SNLEKDKEAE YAAQLAELRQ RLDHAEADRQ 651 700 ENSTTRP00000001805/1-681 ELQDELRQER EARQKLEMMI KELKLQILKS SKTAKE bmy_09984T0/1-550 ---------- ---------- ---------- ------ ENSP00000415243/1-684 ELQDELRQER EARQKLEMMI KELKLQILKS SKTAKE BACU017825/1-643 ELQDELRQER EARQKLEMMI KELKLQILKS SKNAKE ENSBTAP00000005438/1-685 ELQDELRQER EARQKLEMMI KELKLQILKS SKTAKE