KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:33 2014 Check: 00 .. Name: ENSP00000006658/1-802 Len: 805 Check: 2598 Weight: 1.00 Name: ENSTTRP00000000201/1-805 Len: 805 Check: 1271 Weight: 1.00 Name: ENSBTAP00000005441/1-789 Len: 805 Check: 1726 Weight: 1.00 Name: bmy_06711T0/1-789 Len: 805 Check: 6276 Weight: 1.00 Name: BACU006436/1-741 Len: 805 Check: 5259 Weight: 1.00 // 1 50 ENSP00000006658/1-802 MLGARAWLGR VLLLPRAGAG LAASRRCPGV WPRTWPHRSP SRGSSSRDKD ENSTTRP00000000201/1-805 MQGARAWRCR GLLLTRSAPG LAASRRGHGV WHRTWPPRSP SGGSSSQDKN ENSBTAP00000005441/1-789 MLGARALRCR GFLLPGAGPV LALS------ ---------- YRGSSARDKD bmy_06711T0/1-789 ---------- MSHLSSPPQK HKGERKGHGL ------PRGS ERGSSSRDKD BACU006436/1-741 ---------M AFHRPETRKL VGQDTVLVSF ---------- LRGSSSRDKD 51 100 ENSP00000006658/1-802 RSATVSSSVP MPAGGKGSHP S---STPQRV PNRLIHEKSP YLLQHAYNPV ENSTTRP00000000201/1-805 RSVTVGSLVP MSAGGKGSRT NCSWSTPQKV PNRLISEKSP YLLQHAYNPV ENSBTAP00000005441/1-789 RSVTVSSSVP MPAGGKGSRT NCSQSTPQKV PNRLINEKSP YLLQHAYNPV bmy_06711T0/1-789 RSVTVSSSVP MPAGGKGSRT NCCQPTPQKV PNRLISEKSP YLLQHAYNPV BACU006436/1-741 RSVTVSSSVP MPAGGKGSRT NCSQPTPQKV PNRLISEKSP YLLQHAYNPV 101 150 ENSP00000006658/1-802 DWYPWGQEAF DKARKENKPI FLSVGYSTCH WCHMMEEESF QNEEIGRLLS ENSTTRP00000000201/1-805 DWYPWGQEAF DKARKENKPI FLSVGYSTCH WCHLMEEESF QNEEIGRLLS ENSBTAP00000005441/1-789 DWYPWGQEAF DKAKKENKPI FLSVGYSTCH WCHMMEEESF QNEEIGRLLS bmy_06711T0/1-789 DWYPWGQEAF DKARKENKPI FLSVGYSTCH WCHMMEEESF QNEEIGRLLS BACU006436/1-741 DWYPWGQEAF DKARKEDKPI FLSVGYSTCH WCHMMEEESF QNEEIGRLLN 151 200 ENSP00000006658/1-802 EDFVSVKVDR EERPDVDKVY MTFVQATSSG GGWPMNVWLT PNLQPFVGGT ENSTTRP00000000201/1-805 EDFVSVKVDR EERPDVDKAY MTFVQATSSG GGWPMSVWLT PSLQPFVGGT ENSBTAP00000005441/1-789 EDFVSVKVDR EERPDVDKVY MTFVQATSSG GGWPMSVWLT PDLQPFVGGT bmy_06711T0/1-789 EDFVSVKVDR EERPDVDKVY MTFVQATSSG GGWPMSVWLT PNLQPFVGGT BACU006436/1-741 EDFVSVK--- ---------- -----ATSNG GGWPMSVWLT PNLQPFVGGT 201 250 ENSP00000006658/1-802 YFPPEDGLTR VGFRTVLLRI REQWKQNKNT LLENSQRVTT ALLARSEISV ENSTTRP00000000201/1-805 YFPPEDGLTR VGFRTVLMRI REQWKQNKSP LLKTSQRVTT ALLARSEISM ENSBTAP00000005441/1-789 YFPPEDGLTR VGFRTVLMRI RDQWKQNKST LLENSQRVTT ALLARSAISM bmy_06711T0/1-789 YFPPEDGLTR VGFRTVLMRI REQWKQNKST LLENSQRVTA ALLARSEISM BACU006436/1-741 YFPPEDGLTR VGFRTVLMRI REQWNQNKST LLENSQRVTA ALLARSEISM 251 300 ENSP00000006658/1-802 GDRQLPPSAA TVNNRCFQQL DEGYDEEYGG FAEAPKFPTP VILSFLFSYW ENSTTRP00000000201/1-805 GDRQLPPSAV TTNSRCFQQL DESYDEEYGG FAEAPKFPTP VILSFLFSYW ENSBTAP00000005441/1-789 GDRQLPPSAA TMNSRCFQQL DEGYDEEYGG FAEAPKFPTP VILSFLFSYW bmy_06711T0/1-789 GDRQLPPSAA TMNSRCFQQL DEGYDEEYGG FAEAPKFPTP VILSFLFSYW BACU006436/1-741 GDRQLPPSAA TMNSRCFQQL DEGYDEEYGG FAEAPKFPTP VILSFLFSYW 301 350 ENSP00000006658/1-802 LSHRLTQDGS RAQQMALHTL KMMANGGIRD HVGQGFHRYS TDRQWHVPHF ENSTTRP00000000201/1-805 LSHRLTQDGA RAQQMALHTL KMMANGGIRD HVGQGFHRYS TDRQWHVPHF ENSBTAP00000005441/1-789 LSHRLTQDGS RAQQMALHTL KMMANGGIRD HVGQGFHRYS TDRQWHVPHF bmy_06711T0/1-789 LSHRLTQDGS RAQQMALHTL KMMANGGIRD HVGQGFHRYS TDRQWHVPHF BACU006436/1-741 LSHRLTQDGS RAQQMALHTL KMMANGGIRD HVGQGFHRYS TDRQWHVPHF 351 400 ENSP00000006658/1-802 EKMLYDQAQL AVAYSQAFQL SGDEFYSDVA KGILQYVARS LSHRSGGFYS ENSTTRP00000000201/1-805 EKMLYDQAQL TVAYSQAFQI SGDEFYSEVA KGILQYVARN LSHRSGGFYS ENSBTAP00000005441/1-789 EKMLYDQAQL TVAYSQAFQI SGDEFYSEVA KGILQYVVRN LSHRSGGFYS bmy_06711T0/1-789 EKMLYDQAQL AVAYSQAFQI SGDEFYSEVA KGILQYVARN LSHRSGGFYS BACU006436/1-741 EKMLYDQAQL TVAYSQAFQI SGDEFYSEVA KGILQYVARN LSHRSGGFYS 401 450 ENSP00000006658/1-802 AEDADSPPER GQRPKEGAYY VWTVKEVQQL LPEPVLGATE PLTSGQLLMK ENSTTRP00000000201/1-805 AEDGDSPPER GMRPKEGAFY VWTAKEVQHL LPEPVLGTTE PLTSGQLLMK ENSBTAP00000005441/1-789 AEDADSPPER GMRPKEGAFY VWTVKEVQHL LPEPVLGATE PLTSGQLLMK bmy_06711T0/1-789 AEDADSPPER GMRPKEGAFY VWTVKEVQQL LPEPVLGATE PLTSGQLLMK BACU006436/1-741 AEDADSPPER GMRPKEGAFY VWTVKEVQQL LPEPVLGATE PLTSGQLLMK 451 500 ENSP00000006658/1-802 HYGLTEAGNI SPSQDPKGEL QGQNVLTVRY SLELTAARFG LDVEAVRTLL ENSTTRP00000000201/1-805 HYGLTEAGNV SPGQDPKGEL QGQSVLTVRY SLELTAARFG LEVEAVRTLL ENSBTAP00000005441/1-789 HYGLTEAGNI SPSQDPKGEL QGQNVLTVRY SLELTAARFG LDVEAVRTLL bmy_06711T0/1-789 HYGLTEAGSI SPSQDPKGEL QGQNVLTVRY SLELTAARFG LEVEAVRTLL BACU006436/1-741 HYGLTEAGSI SPSQDPKGEL QGQNVLTVRY SLELTAARFG LEVEAVRTLL 501 550 ENSP00000006658/1-802 NSGLEKLFQA RKHRPKPHLD SKMLAAWNGL MVSGYAVTGA VLGQDRLINY ENSTTRP00000000201/1-805 SSGLEKLFQA RKHRPKPHLD SKMLAAWNGL MVSGFAVTGA VLGQERLINY ENSBTAP00000005441/1-789 NSGLEKLFQA RKHRPKPHLD SKMLAAWNGL MVSGFAVTGA VLGQERVINY bmy_06711T0/1-789 NSGLEKLFQA RKHRPKPHLD SKMLAAWNGL MVSGFAVTGA VLGQERLINY BACU006436/1-741 NSGLEKLFQA RKHRPKPHLD SKMLAAWNGL MVSGFAVTGA VLGQERLISY 551 600 ENSP00000006658/1-802 ATNGAKFLKR HMFDVASGRL MRTCYTGPGG TVEHSNPPCW GFLEDYAFVV ENSTTRP00000000201/1-805 AISGAKFLKR HMFDVASGRL MRTCYAGSGG TVEHSNPPCW GFLEDYAFVV ENSBTAP00000005441/1-789 AINGAKFLKR HMFDVASGRL MRTCYAGSGG TVEHSNPPCW GFLEDYAFVV bmy_06711T0/1-789 AISGAKFLKR HMFDVASGRL MRTCYAGSGG TVEHSNPPCW GFLEDYAFVV BACU006436/1-741 AISGAKFLKR HMFDVASGRL MRTCYAGSGG TVEHSNPPCW GFLEDYAFVV 601 650 ENSP00000006658/1-802 RGLLDLYEAS QESAWLEWAL RLQDTQDKLF WDSQGGGYFC SEAELGAGLP ENSTTRP00000000201/1-805 RGLLDLYEAS QESAWLEWAL RLQDTQDRLF WDSQGGGYFC SEAELGAGLP ENSBTAP00000005441/1-789 RGLLDLYEAS QESAWLEWAL RLQDTQDRLF WDSRGGGYFC SEAELGAGLP bmy_06711T0/1-789 RGLLDLYEAS QESAWLEWAL RLQDTQDRLF WDSQGGGYFC SEAELGAGLP BACU006436/1-741 RGLLDLYEAS QESAWLEWAL RLQDTQDRLF WDSRGGGYFC SEAELGAGLP 651 700 ENSP00000006658/1-802 LRLKDDQDGA EPSANSVSAH NLLRLHGFTG HKDWMDKCVC LLTAFSERMR ENSTTRP00000000201/1-805 LRLKDDQDGA EPSANSVSAH NLLRLHGFTG HKDWMHKCVC LLAAFSERMR ENSBTAP00000005441/1-789 LRLKDDQDGA EPSANSVSAH NLLRLHGFTG HKDWMDKCVC LLTAFSERMR bmy_06711T0/1-789 LRLKDDQDGA EPSANSMSAH NLLRLHGFTG HKDWMDKCVC LLTAFSERMR BACU006436/1-741 LRLKDDQDGA EPSANSTSAH NLLRLHGFTG HKDWMDKCVC LLTAFSERMR 701 750 ENSP00000006658/1-802 RVPVALPEMV RALSAQQQTL KQIVICGDRQ AKDTKALVQC VHSVYIPNKV ENSTTRP00000000201/1-805 RVPVALPEMV RALSAHQQTL KQIVICGDPQ AKDTKALLQC VHSIYIPNKV ENSBTAP00000005441/1-789 RVPVALPEMV RALSAHQQTL KQIVICGDPQ AKDTKALLQC VHSIYIPNKV bmy_06711T0/1-789 RVPVALPEMV RALSAHQQTL KQIVICGDPQ AKDTKALLQC VHSIYIPNKV BACU006436/1-741 RVPVALPEMV RALSAHQQTL KQ-------- ---------- ---------V 751 800 ENSP00000006658/1-802 LILADGDPSS FLSRQLPFLS TLRRLEDQAT AYVCENQACS VPITDPCELR ENSTTRP00000000201/1-805 LILADGDPSS FLCRQLPFLS TLRRLEDQAT AYVCENQACS IPITEPCELR ENSBTAP00000005441/1-789 LILADGDPSS FLSRQLPFLN TLRRLEDRAT AYVCENQACS MPITEPCELR bmy_06711T0/1-789 LILADGDPSS FLSRQLPFLS TLRRLEDQAT AYVCENQACS MPITEPCELR BACU006436/1-741 LILADGDPSS FLSRQLPFLS TLRRLEDQAT AYVCENQACS MPITEPCELR 801 850 ENSP00000006658/1-802 KLLHP ENSTTRP00000000201/1-805 KLLHQ ENSBTAP00000005441/1-789 KVLHQ bmy_06711T0/1-789 KLLHQ BACU006436/1-741 KLLHQ