KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:26:39 2014 Check: 00 .. Name: ENSBTAP00000005457/1-732 Len: 1177 Check: 1125 Weight: 1.00 Name: BACU013882/1-670 Len: 1177 Check: 1831 Weight: 1.00 Name: ENSTTRP00000003240/1-1172 Len: 1177 Check: 9660 Weight: 1.00 Name: bmy_15475T0/1-730 Len: 1177 Check: 7665 Weight: 1.00 // 1 50 ENSBTAP00000005457/1-732 MCSTNPGNWV TFDDDPTFQS SQKSKNFPLE NQGICRPNGL KLNLSGAKEF BACU013882/1-670 MCSTNPGNWV TFDDDPAFQS SQKSKNFPLE NQGICRPNGL KLNLSGTKEF ENSTTRP00000003240/1-1172 MCSTNPGNWV TFDDDPAFQS SQKSKNFPLE NQGICRPNGL KLNLSGTKEF bmy_15475T0/1-730 MCSTNPGNWV TFDDDPAFQS SQKSKNFPLE NQGICRPNGL KLNLSGTKEF 51 100 ENSBTAP00000005457/1-732 PSGSSSTSST PLSSPIIDFY FSPGPPSNSP LSTPTKDFPG FPGIPKAGTH BACU013882/1-670 PSGYSSTSST PLSSPIIDFY FSPGPPSNSP LSTPTKDFPG FPGIPKAGTH ENSTTRP00000003240/1-1172 PSGYSSTSST PLSSPIIDFY FSPGPPSNSP LSTPTKDFPG FPGIPKAGTH bmy_15475T0/1-730 PSGYSSTSST PLSSPIIDFY FSPGPPSNSP LSTPTKDFPG FPGIPKAGTH 101 150 ENSBTAP00000005457/1-732 VLYPIPESSS NSPLTTATGS SSLATKPTCF SQASLPSDHS CIHPASKVGL BACU013882/1-670 VLYPIPESSS NSPLIPGAGS SLLPTKPTCL SHASLLSDHS CIHPAPKVGL ENSTTRP00000003240/1-1172 VLYPIPESSS NSPLIPGAGS SILPTKPTCL SNASLLSDHS CIHPAPKVGL bmy_15475T0/1-730 VLYPIPESSS NSPLIPGAGS SLLPTKPTCL SHASLLSDHS CIHPAPKVGL 151 200 ENSBTAP00000005457/1-732 ADEMSPHQAE --GFQSDTPQ FQYFREDCAF SSPFWKDEGS ASQLTFDPPG BACU013882/1-670 PDEMNPHQAE SLGFQSDTPQ FQYFQEDCAF SSPFWKDEGS ASQLTFDPPG ENSTTRP00000003240/1-1172 PDEMSPHQAE SLGFQSDTPQ FQYFQEDCAF SSPFWKDEGS ASQLTFDPPG bmy_15475T0/1-730 PDEMSPHQAE GLGFQSDTPQ FQYFQEDCAF SSPFWKDEGS ASQLTFDPPG 201 250 ENSBTAP00000005457/1-732 SRKIFPSRDK EVPVDQKGLN QCSLNYICEK LEYLQSAENQ DSFGNLSMQC BACU013882/1-670 SRKMVPSRDK EMPIDQKGLN QCSLNYICEK LEHLQSAENQ DSFGNLSTQY ENSTTRP00000003240/1-1172 SRKMVPSRDK EMPIDQKALN QCSLNYICEK LEHLQSAENQ DSFGNLSTQY bmy_15475T0/1-730 SRKMVPSRDK EMPIDQKGLN QCSXNYICEK LEHLQSAENQ DSFGNLSTQY 251 300 ENSBTAP00000005457/1-732 LYAEDPASSF VPHMLFRSQP KAGWSFMMRI PEKKNMMSSR QWGPIFLKVL BACU013882/1-670 LYAEDAASSF VPHMLFRSQP KAGWAFMLRI PEKKNMMSSR QWGPIFLKVL ENSTTRP00000003240/1-1172 LYAEDAASSF VPHMLFRSQP KAGWSFMLRI PEKKNVMSSR QWGPIFLKVL bmy_15475T0/1-730 LYAEDAASSF VPHMLFRSQP KAGWSFMLRI PEKKNMMSSR QWGPIFLKVL 301 350 ENSBTAP00000005457/1-732 PGGILQMYYE KGLEKPFKEL QLDPYCRLSE PKVENFSMAG KIHTVKIEHV BACU013882/1-670 PGGILQMYYE KGLEKPFKEL QLNPYCRLSE PKVENFSVTG KIHTVKIEHV ENSTTRP00000003240/1-1172 PGGILQMYYE KGL-KPFKEL QLNPYCRLSE PKVENFSVTG KIHTVKIEHV bmy_15475T0/1-730 PGGILQMYYE KGLEKPFKEL QLNPYCRLSE PKVENFSVTG KIHTVKIEHV 351 400 ENSBTAP00000005457/1-732 SYTEKRKYHS KTEVVHEPDI EQMLKLGSTE YHDFLDFLTT VEEELIRLPA BACU013882/1-670 SYTEKRKYHS KTEVVHEPDI EQMLKLGSTE YHDFLDFLTS VEEELMKLPA ENSTTRP00000003240/1-1172 SYTEKRKYHS KTEVVHEPDI EQMLKLGSTE YHDFLDFLTS VEEELMKLPA bmy_15475T0/1-730 SYTEKRKYHS KTEVVHEPDI EQMLKLGSTE YHDFLDFLTS VEEELMKLPA 401 450 ENSBTAP00000005457/1-732 VSKPKKNYEE QEIFLEIVDN FWGKITKEEG KLVESAVITQ ISCLCFVNGN BACU013882/1-670 VSKPKKNYEE QEIFLEIVDN FWGKITKEEG KLVESAVITQ ICCLCFVNGN ENSTTRP00000003240/1-1172 VSKPKKNYEE QEVFLEIVDN FWGKITKEEG KLVESAVITQ IWCLCFVNGN bmy_15475T0/1-730 VSKPKKNYEE QEIFLEIVDN FWGKITKEEG KLVESAVITQ ICCLCFVNGN 451 500 ENSBTAP00000005457/1-732 TECFLTLNDH ELQKRNERYF EKDPEKKGID ILDYHFHKCV KAQEFEQSRI BACU013882/1-670 TECFLTLNDL ELQKRNECYF EKDPEKKGID ILDYHFHKCV KAQEFEQSRI ENSTTRP00000003240/1-1172 TECFLTLNDL ELQKRNECYF EKDPEKKGID ILDYHFHKCV NAQEFEQSRI bmy_15475T0/1-730 TECFLTLNDL ELQKRNECYF EKDPEKKGID ILDYHFHKCV KAQEFEQSRI 501 550 ENSBTAP00000005457/1-732 IKFVPLDACR FELMRFKTSH SGEDLPFSLK SVVVVQGAYV ELQAFVNMAP BACU013882/1-670 IKFVPLDACR FELMRFKTLY SGEDLPFSLK SVVVVQGAYV ELQAFVNMAP ENSTTRP00000003240/1-1172 IKFVPLDACR FELMRFKTLY SGEDLPFSLK SVVVVQGAYV ELQAFVNMAP bmy_15475T0/1-730 IKFVPLDACR FELMRFKTLY SGEDLPFSLK SVVVVQGAYV ELQAFVNMAP 551 600 ENSBTAP00000005457/1-732 LVQRPSHAGS WRSCDNIMIH FPVPSQWIKA LWTMNLQRQK SLKAKMNRRA BACU013882/1-670 LVQRP----S LRSCDNIMIH FPVPSQWIKA LWTMNLQRQK SLKAKMNRRA ENSTTRP00000003240/1-1172 LVQRP----S LRSCDNIMIH FPVPSQWIKA LWTMNLQRQK SLKAKMNRRA bmy_15475T0/1-730 LVQRP----S LRSCDNIMIH FPVPSQWIKA LWTMNLQRQK SLKAKMNRRA 601 650 ENSBTAP00000005457/1-732 CLGSLHELES EPVIQVTVGS AKYESAYRAV VWKIDRLPDK NSSPDHPHCL BACU013882/1-670 CLGSLHEPES EPVIQVTVGS AKYESAYRAV VWKIDRLPDK NSSK------ ENSTTRP00000003240/1-1172 CLGSLHEPES EPVIQVTVGS AKYESAYRAV VWKIDRLPDK NSSPDHPHCL bmy_15475T0/1-730 CLGSLHEPES EPVIQVTVGS AKYESAYRAV VWKIDRLPDK NSSPDHPHCL 651 700 ENSBTAP00000005457/1-732 SYKLELGSDQ EIPSDWYPFA TIQFGILDTT ASRTEVRSLG VESDVQPQKH BACU013882/1-670 ---------- ------YSTR QADF------ ---------- ---------H ENSTTRP00000003240/1-1172 SYKLELGSDQ EIPSDWYPFA TVQFGILDTC ASRTEVRSLG VESDVQPQKH bmy_15475T0/1-730 SYKLELGSDQ EIPSDWYPFA TVQFGILDTC ASRTEVRSLG VESDVQPQKH 701 750 ENSBTAP00000005457/1-732 IHHRACYNIQ V--------- ---------- ---------- EIEKKW---- BACU013882/1-670 MKSLKCFHPP P--------- ---------- ---------- -----W---- ENSTTRP00000003240/1-1172 VHQRACYNIQ PKLYRSVIED VIEGVRDLFA EEGIEEQVLK DLKQLWETKV bmy_15475T0/1-730 VHQRACYNIQ V--------- ---------- ---------- EIEKKW---- 751 800 ENSBTAP00000005457/1-732 ---------- ---------- ---------- ---------- ---------- BACU013882/1-670 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003240/1-1172 LQSKATEDFF RNGVHLPLFT LQLPHSLHQT LQSSTASLLI PAGKTLPTFT bmy_15475T0/1-730 ---------- ---------- ---------- ---------- ---------- 801 850 ENSBTAP00000005457/1-732 ---------- ---------- ---------- ---------- ---------- BACU013882/1-670 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003240/1-1172 TAELGTSNSS ANFTFPGYPV HVPXXXXXXX XXXXXYKVNV PIMVTQTGRA bmy_15475T0/1-730 ---------- ---------- ---------- ---------- ---------- 851 900 ENSBTAP00000005457/1-732 ---------- ---------- ---------- ---------- ---------- BACU013882/1-670 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003240/1-1172 SIQHPFQQVS QQLGQSIIQT NIPQLNPWCL QVTTEKSQRM ETVLQQPVVL bmy_15475T0/1-730 ---------- ---------- ---------- ---------- ---------- 901 950 ENSBTAP00000005457/1-732 ---------- ---------- ---------- ---------- ---------- BACU013882/1-670 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003240/1-1172 RSGTVDRKRL ENATGDTLLH PGNQHKIMSE ALLSQPENSQ YISLSGVVFP bmy_15475T0/1-730 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSBTAP00000005457/1-732 ---------- ---------- ---------- ---------- ---------- BACU013882/1-670 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003240/1-1172 PQLSQMDSNV EPVLGVSASM TQNLHGGPLS TGPQGAQHQH TPDVQLRVLK bmy_15475T0/1-730 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSBTAP00000005457/1-732 ---------- ---------- ---------- ---------- ------IKID BACU013882/1-670 ---------- ---------- ---------- ---------- --VETRLRQM ENSTTRP00000003240/1-1172 DRMCGWDSVK QPRNTEEPSS LPVSKKDSNS QMDLSLQVTD DDINEIIQID bmy_15475T0/1-730 ---------- ---------- ---------- ---------- ------IKID 1051 1100 ENSBTAP00000005457/1-732 G--------- ---------- ---------- ---------- ---------- BACU013882/1-670 G--------- ---------- ---------- ---------- ---------- ENSTTRP00000003240/1-1172 GTGDTASSDE IGSTRDVDEN KFLGITDAGD LKVFEEASSI SNEDSMANSS bmy_15475T0/1-730 G--------- ---------- ---------- ---------- ---------- 1101 1150 ENSBTAP00000005457/1-732 ---------- -EDPDKAGDC VTQ------- ---------- ---------- BACU013882/1-670 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003240/1-1172 DNEDPQVDLV EEDPLNSGDD VSEQDVPDLF DTDNVIVCQY EKIHRSKNKW bmy_15475T0/1-730 ---------- -EDPDKAGDC VTQ------- ---------- ---------- 1151 1200 ENSBTAP00000005457/1-732 ---------- ---------- ------- BACU013882/1-670 ---------- ---------- ------- ENSTTRP00000003240/1-1172 KFYLKDGIMC FGGRDYVFAK AVGDAEW bmy_15475T0/1-730 ---------- ---------- -------