KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:40 2014 Check: 00 .. Name: ENSP00000307697/1-681 Len: 713 Check: 6350 Weight: 1.00 Name: ENSBTAP00000005472/1-682 Len: 713 Check: 1189 Weight: 1.00 Name: bmy_19372T0/1-576 Len: 713 Check: 4465 Weight: 1.00 Name: BACU015078/1-678 Len: 713 Check: 3805 Weight: 1.00 Name: ENSTTRP00000013043/1-678 Len: 713 Check: 4257 Weight: 1.00 // 1 50 ENSP00000307697/1-681 -MGSPVHRVS LGDTWSRQMH PDIESERYMQ SFDVERLTNI LDGGAQNTAL ENSBTAP00000005472/1-682 MEGNPVHRVS AGDAWSSSMH PDIESERHSQ SFNVEELTNI LDGGAQNTAL bmy_19372T0/1-576 -MGSPVHRVS MGDTWSRQVH PDIESERHMQ SFNVEELTNI LDGGAQNTAL BACU015078/1-678 -MGSPVHRVS MGDTWSRQVH PDIESERHMQ SFNVEELTNI LDGGAQNTAL ENSTTRP00000013043/1-678 -MGSPVNRVS MGDTWSRQVH PDIERERHVQ SFCVEELTNI LDGGAQNTAL 51 100 ENSP00000307697/1-681 RRKVESIIHS YPEFSCKDNY FMTQNERYKA AMRRAFHIRL IARRLGWLED ENSBTAP00000005472/1-682 RRKVESIIHS EPELSLKDNY FMTQNERYEA AIKKKFHILM LAQRLGWSEG bmy_19372T0/1-576 RRKVESIIHS DPELSLKDNY FMTQNERYEA AIKKKFHIQM LAQRLGWSED BACU015078/1-678 RRKVESIIHS DPELSLKDNY FMTQNERYEA AIKKKFHIQM LAQRLGWSED ENSTTRP00000013043/1-678 RREVESIIHS DPELSLKDNY FMTQNERYEA AIKKKFHVQM LAQRLGWSED 101 150 ENSP00000307697/1-681 GRELGYAYRA LSGDVALNIH RVFVRALRSL GSEEQIAKWD PLCKNIQIIA ENSBTAP00000005472/1-682 SSELQYASRS VSGDLGFAIH HIFQKTIRSL GSEEQIAKWD PLCSKFQILG bmy_19372T0/1-576 SRELYYANS- ---------- ---------- ---------- ---------G BACU015078/1-678 SRELYYANRS LSGDLGLALQ FVFQKALRSL GSEEQIAKWD PLCNKLQILA ENSTTRP00000013043/1-678 SRELYYANRS LSGDLGLALQ FVFQKALRSL GSEEQIAKWD PLCNKLQILA 151 200 ENSP00000307697/1-681 TYAQTELGHG TYLQGLETEA TYDAATQEFV IHSPTLTATK WWPGDLGRSA ENSBTAP00000005472/1-682 TYAQTELGHG TYLQGLETEA TYDAATQEFV VHSPTMTAIK WWPGDLGRSA bmy_19372T0/1-576 TVSHPCPGPG ---------- ---------- ---------- --PADLLRSP BACU015078/1-678 TYAQTELGHG TYLQGLETEA TYDAATQEFV VHSPTLTAIK WWPGDLGRSA ENSTTRP00000013043/1-678 TYAQTELGHG TYLQGLETEA TYDAATQEFV VHSPTLTAIK WWPGDLGRSA 201 250 ENSP00000307697/1-681 THALVQAQLI CSGARRGMHA FIVPIRSLQD HTPLPGIIIG DIGPKMDFDQ ENSBTAP00000005472/1-682 THALVQAQLI CSGARQGMHA FIVPIRSLDD HSPLPGITIG DIGPKMDFEH bmy_19372T0/1-576 AG---HACLY CAHP------ --------ES RGPQP----- ---------- BACU015078/1-678 THALVQAQLI CSGAQQGMHA FIVPIRSLED HSPLPGITVG DIGPKMDFDH ENSTTRP00000013043/1-678 THALVQAQLI CSGAQQGMHA FIVPIRSLED HSPLPGITVG DIGPKMDFDH 251 300 ENSP00000307697/1-681 TDNGFLQLNH VRVPRENMLS RFAQVLPDGT YVKLGTAQSN YLPMVVVRVE ENSBTAP00000005472/1-682 TDNGFLKLDH VRIPRENMLN RFAQVLPDGT YVKLGVPKSN YLSMVVVRVD bmy_19372T0/1-576 ---------- --TARENMLS RFAQVLPDGT YIKLGTAKSN YLSMVVVRVD BACU015078/1-678 SDNGFLQLDH VRVPRENMLS RFAQVLPDGT YIKLGTAKSN YLSMVVVRVD ENSTTRP00000013043/1-678 SDNGFLQLDH VRIPRENMLS RFAQVLPDGT YIKLGTAKSN YLSMVVVRVD 301 350 ENSP00000307697/1-681 LLSGEILPIL QKACVIAMRY SVIRRQSRLR PSD--PEAKV LDYQTQQQKL ENSBTAP00000005472/1-682 ILLGEVLPLL QKACTIAVRY AVIRRQSRLR PSD--PEAKV LDYQTQQQKL bmy_19372T0/1-576 ILSDEVIPLL QKACVIAIRY SVIRRQSRLR PRQGAPRGAT AARATSIPQC BACU015078/1-678 ILSDEVIPLL QKACVIAIRY SVIRRQSRLR PSD--PEAKV LDYQTQQQKL ENSTTRP00000013043/1-678 MLSNEVIPLL QKACVIAIRY SVIRHQSRLQ PSD--PEAKV LDYQTQQQKL 351 400 ENSP00000307697/1-681 FP----QLAI SYAFHFLAVS LLEFFQHSYT AILNQDFSFL PELHALSTGM ENSBTAP00000005472/1-682 FP----PLAM AYAFHFVANN LLEFFHHSYS FILDGDFALL PELHALSAGL bmy_19372T0/1-576 LPPDTNPLPE STPWHQRAHC TLCF------ ---------- -NLHALSAGM BACU015078/1-678 FP----PLAK AYAFHFVANS LLEFFHRSYS SILDRDFSLL PELHALSAGM ENSTTRP00000013043/1-678 FP----PLAK AYAFHFVAKS LLEFFHRSYS SILDRDFRLL PELHALSAGM 401 450 ENSP00000307697/1-681 KAMMSEFCTQ GAEMCRRACG GHGYSKLSGL PSLVTKLSAS CTYEGENTVL ENSBTAP00000005472/1-682 KAMLSDFCTQ GVEQCRRACG GHGYSKLSGL PSLLTRVTAS CTYEGENTVL bmy_19372T0/1-576 KALVSDFCMQ GAELCRRACG GHGYSKLSGL PSLVTRVTAS CTYEGENTVL BACU015078/1-678 KALVSDFCIQ GAELCRRACG GHGYSKLSGL PSLVTRVTAS CTYEGENTVL ENSTTRP00000013043/1-678 KALVSDFCVQ GAELCRRACG GHGYSKLSGL PSLVTRVTAS CTYEGENTVL 451 500 ENSP00000307697/1-681 YLQVARFLVK SYLQTQMSPG STPQRSLSPS VAYLTAPDLA RCPAQRAADF ENSBTAP00000005472/1-682 YLQTARFLIK SYLNTQKSPG SASKGSLPQS VAYLTAPDLA RCPAQTAADF bmy_19372T0/1-576 YLQTARFLVK SYLQAQE--- STSQRSLPQS VAYLTAPHLA RCPAQKVADF BACU015078/1-678 YLQTARFLVK SYLQAQE--- STSQRSLPQS VAYLTAPDLA MCPAQKVADF ENSTTRP00000013043/1-678 YLQTARFLVK SYLQAQE--- STSQRSLPQS VAYLTAPDLA KCPAQNVADF 501 550 ENSP00000307697/1-681 LCPELYTTAW AHVAV----- ---------- ---------- RLIKDSVQHL ENSBTAP00000005472/1-682 LQPELYTTAW AHVAV----- ---------- ---------- RLIKDSVHHL bmy_19372T0/1-576 LHPELYTTAW AHVAARQPGN KCHPSLPHLF KKQNLFSLAF RLIKDSVHHL BACU015078/1-678 LHPELYTTAW AHVAA----- ---------- ---------- RLIKDSVHHL ENSTTRP00000013043/1-678 LHPELYTTAW AHVAA----- ---------- ---------- RLIKDSVHHL 551 600 ENSP00000307697/1-681 QTLTQSGADQ HEAWNQTTVI HLQAAKVHCY YVTVKGFTEA LEKLENEPAI ENSBTAP00000005472/1-682 QTLRQAGADE HDAWNQTTVI HVQATKAHLY YVTVKIFTEA LEKLESQPAI bmy_19372T0/1-576 QTLMQSGADR HEAWNQTTVI HLQATKAHLY YVTVKIFTEA LEKLENQPAI BACU015078/1-678 QTLMQSGADR HEAWNQTTVI HLQAAKAHLY YVTVKIFTEA LEKLENQPAI ENSTTRP00000013043/1-678 QTLMQSGADR HEAWNQTTVI HLQAAKAHLY YVTVKIFTEA LEKLENQPAI 601 650 ENSP00000307697/1-681 QQVLKRLCDL HAIHGILTNS GDFLHDAFLS GAQVDMARTA YLDLLRLIRK ENSBTAP00000005472/1-682 HQVLKRLSDL YALHGILTNA GDFLHDGFLS GAQIDMARKA YLDLLPFIRK bmy_19372T0/1-576 QQVLKRLCDL YALHGIMTNT GDFLHDGFLS GAQIDMARKA YLDLLLLIRK BACU015078/1-678 QQVLKRLCDL YALHGIMTNT GDFLHDGFLS GAQIDMARKA YLDLLLLIRK ENSTTRP00000013043/1-678 QQVLKRLCDL YALHGIMTNT GDFLHDGFLS GAQIDVARKA YLDLLLLIRK 651 700 ENSP00000307697/1-681 DAILLTDAFD FTDQCLNSAL GCYDGNVYER LFQWAQKSPT NTQENPAYEE ENSBTAP00000005472/1-682 DAILLTDAFD FTDQCLNSAL GCYDGHAYER LFQWAQKSPT NTEGNPAYEK bmy_19372T0/1-576 DAILLTDAFD FTDQCLNSAL GCYDGNVYER LFQWAQKSPT NTQGNPAYEK BACU015078/1-678 DAILLTDAFD FSDQCLNSAL GCYDGNVYER LFQWAQKSPT NTQGNPAYEK ENSTTRP00000013043/1-678 DAVLLTDAFD FTDQCLNSAL GCYDGNVYER LFQWAQRSPT NTQGNPAYEK 701 750 ENSP00000307697/1-681 YIRPLLQSWR SKL ENSBTAP00000005472/1-682 YIRPLLQGRR ARL bmy_19372T0/1-576 YIRPLLQGWR SRL BACU015078/1-678 YIRPLLQGWR SRL ENSTTRP00000013043/1-678 YIRPLLQGWR SRL