KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:41 2014 Check: 00 .. Name: ENSP00000288912/1-1149 Len: 1776 Check: 6967 Weight: 1.00 Name: ENSBTAP00000005477/1-1164 Len: 1776 Check: 7173 Weight: 1.00 Name: ENSTTRP00000002837/1-1135 Len: 1776 Check: 3183 Weight: 1.00 Name: bmy_01444T0/1-1014 Len: 1776 Check: 4867 Weight: 1.00 Name: BACU013633/1-1709 Len: 1776 Check: 2282 Weight: 1.00 // 1 50 ENSP00000288912/1-1149 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005477/1-1164 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002837/1-1135 ---------- ---------- ---------- ---------- ---------- bmy_01444T0/1-1014 ---------- ---------- ---------- ---------- ---------- BACU013633/1-1709 MSEKETRQSG GSPEASGVTV SDIQELIQRK EEIEAQIKAN YEVLESQKGI 51 100 ENSP00000288912/1-1149 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005477/1-1164 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002837/1-1135 ---------- ---------- ---------- ---------- ---------- bmy_01444T0/1-1014 ---------- ---------- ---------- ---------- ---------- BACU013633/1-1709 GMNEPLVDCE GYPRADVDLY RVRTARHNIV CLQNDHKALM KQVEEALHQL 101 150 ENSP00000288912/1-1149 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005477/1-1164 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002837/1-1135 ---------- ---------- ---------- ---------- ---------- bmy_01444T0/1-1014 ---------- ---------- ---------- ---------- ---------- BACU013633/1-1709 HARDKEKQAR DLAEARREAM SHGLGQSQDL SPAQAFAIVN SISPGSPASI 151 200 ENSP00000288912/1-1149 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005477/1-1164 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002837/1-1135 ---------- ---------- ---------- ---------- ---------- bmy_01444T0/1-1014 ---------- ---------- ---------- ---------- ---------- BACU013633/1-1709 AGLQVDDEIV EFGSVNTQNF QSLQNIGSVV QHSEGVCGPG NQNGKQRALL 201 250 ENSP00000288912/1-1149 ---------- -----MSDAA EAPREATGEN GETEMKE--- ---EEEPNPN ENSBTAP00000005477/1-1164 ---------- -----MSDAE ENPLEETEEY GEIEMQEEDD ---EEEEYPN ENSTTRP00000002837/1-1135 ---------- -----MSDAE ENPLEETEEY GEIEMEE--- ---EEEKYPN bmy_01444T0/1-1014 --MLKISLET SPKRRMSDAE ENPLEETEEY GEIEMEEGED EE-EEEKYPN BACU013633/1-1709 IIMLKISLET SPKRRMSDAE ENPLEETEEY GEIEMEEGED EEEEEEKYPN 251 300 ENSP00000288912/1-1149 YKEVEDPQQE SKDD-TIAWR ESQEEE---- ---------- --RKTGEEEG ENSBTAP00000005477/1-1164 FEGLENVQKE LKEVNTLAWI ESPEEE---- ---EEEEGEE EGREFGEEVE ENSTTRP00000002837/1-1135 DEGLENMQQE LKEDNTLAWR GSQEEG---- ---------- --------EA bmy_01444T0/1-1014 DEGLENMQQE LKEDNTLAWR GSQEEG---- -----EEEEG EGEKRVGEQE BACU013633/1-1709 DEGLENMQQE LKEDNTLAWR GSQEEGEEEG EEGEEEEEEG EGEKRVGEQE 301 350 ENSP00000288912/1-1149 EEEGKEDKKI VMEETEEKAG EVQEKEA--S GIQEETTVEP QEVTASMIRL ENSBTAP00000005477/1-1164 AENGEEGEEA VKEEVGEDTA EALEEEEEAS GAQEESTVEP EEITTSIISL ENSTTRP00000002837/1-1135 EREGAEGKEE GEEFGKEEA- ---------A GAHEETTVKP QEITKSMISL bmy_01444T0/1-1014 EEEEREGEEE GEEFGKEEEA ---------A GAQEETTVKP QEITKAMISL BACU013633/1-1709 EEEEREGEEE GEEFGKEEEA VREEVEEEVA GAQEETTVKP QEITKSMISL 351 400 ENSP00000288912/1-1149 ETQI-TDSQS ITSGIFPKTQ RGSKSKLSLQ LEDAETDELL RDLSTQIEFL ENSBTAP00000005477/1-1164 ERFTQPDSQT VLSEISLVKK SGSESKLSLQ SEFLETFELP RSPGSQLEFL ENSTTRP00000002837/1-1135 ERLTPTDSQS ILSGTLPKTY SGRESKHSLQ SELLETFELP -SMASQLEFL bmy_01444T0/1-1014 ERLTPTDSQS VLSGTLPKTY SGRESKHSLQ SELLETLELP RSMVSQLEFL BACU013633/1-1709 ERLTPTDSQS VLSGTLPKTY SGRESKHSLQ SELLETLELP RSMVSQLEFL 401 450 ENSP00000288912/1-1149 DLDQISPEEQ QISSPERQPS GELEEKTDRM PQDELGQER- R-------DL ENSBTAP00000005477/1-1164 DLDVTTSGEP LISFPERQPS GEL----DQR PQDELEEEEG RDLEPERGDL ENSTTRP00000002837/1-1135 DLDLTTSAEQ QLSSPEKQPS GELAERTDQR PQDELGQER- R-------DL bmy_01444T0/1-1014 DLDLTTSAEQ QLSSPEKQPS GELAERTDQR PQDELGQER- RDLEPERGDL BACU013633/1-1709 DLDLTTSAEQ HLSSPEKQPS GELAERTDQR PQDELGQER- RDLQPERGDL 451 500 ENSP00000288912/1-1149 EPENREEGQE RRV------- -SDIQSKAGI SRESLVSSTT EDILFQKDKS ENSBTAP00000005477/1-1164 EQEKSKKSE- ---------- -KESQPKARI TKASLVSTAT EDILFQRRES ENSTTRP00000002837/1-1135 EPEKREGRKE TRVLY----- ---VQPKARI PKGSLVSTAT EDILFQKDDG bmy_01444T0/1-1014 EPEKREGRKE KRVLYVNEKK EKEFQPKARI PKVSLVSTAT EDILFQKDDS BACU013633/1-1709 EPEKREGRKE KRVLYVNEKK EKEFQPKARI PKVSLVSTAT EDILFQKDDS 501 550 ENSP00000288912/1-1149 TPVYPL---- ---------- ---------- ---------- TMTWSFGWNS ENSBTAP00000005477/1-1164 ANMYPL---- ---------- ---------- ---------- TMTWSFGWNS ENSTTRP00000002837/1-1135 ANVYPL---- ---------- ---------- ---------- AMTWSFGWNS bmy_01444T0/1-1014 ANVYPLFSLE LWLDMCDSMW TRTLHLGSAA LLCRQEIPPV TMTWSFGWNS BACU013633/1-1709 ANVYPL---- ---------- ---------- ---------- TMTWSFGWNS 551 600 ENSP00000288912/1-1149 SLPVYYIREE RQRVLLYVCA HTAIIYNVFR NNQYHLQGHA NIISCLCVSE ENSBTAP00000005477/1-1164 SLPVYYLR-E NQRVLLYASG HTGVIYNVLK NNQYHLQGHP NVISCLCISE ENSTTRP00000002837/1-1135 SLPVYYIQDE NQRVLLYASA NTAVIYNVFK NNQHHLQGHP NVISCLCISE bmy_01444T0/1-1014 SLPVYYIQDE NQRVLLYASA HTAVIYNVFK NNQHHLQGHP NVISCLCISE BACU013633/1-1709 SLPVYYIQDE NQRVLLYASA HTAVIYNVFK NNQHHLQGHP NVISCLCISE 601 650 ENSP00000288912/1-1149 DRRWIATADK GPDCLVIIWD SFTGIPVHTI FDSCPEGNGI MAMAMTHDAK ENSBTAP00000005477/1-1164 DRRWVATADK GPDCLIIIWD SFTGIPVHTI FDSCPRDNGI RAMAMTRDAK ENSTTRP00000002837/1-1135 DRRWVATADK GPECLIIIWD CFTGIPVHTI FDSCPEGGGI RAMAITHDAK bmy_01444T0/1-1014 DRRWVATADK GPDCLIIIWD CFSG------ ---CPEGDGI RAMAITHDAK BACU013633/1-1709 DRRWVATADK GPDCLIIIWD CFSGIPVHTI FDSCPEGDGI RAMAITRDAK 651 700 ENSP00000288912/1-1149 YLATISDAEV QKVCIWKWTL AVETPACTLE LPTEYGVQNY VTFNPTNNKE ENSBTAP00000005477/1-1164 YLATISDAEI QKVCIWKWTL AVETPACTLD LPKEYGFQNF ILKNYNNNKE ENSTTRP00000002837/1-1135 YLATISDAEI QKVCIWRWTL AVETPACTLN LPKEYGFQSY LTFNPTNNKE bmy_01444T0/1-1014 YLATISDAEI QKVCIWRWTL AVETPACALN LPKEYGFQSY LTFNPTNNKE BACU013633/1-1709 YLATISDAEI QKVCIWRWTL AVETPACTLN LPKEYGFQSY LTFNPTNNKE 701 750 ENSP00000288912/1-1149 LVSNSKTRAI YYAWYEERDT LAHSAPLLTE KTFNKLVGKF SQSIFHLNLT ENSBTAP00000005477/1-1164 LVSNSKTQVI YYTWYPEGGI LVHSAPLLTE KTFNKLVGKF SQSVFHLNLT ENSTTRP00000002837/1-1135 LVSNSKTQAI YYMWYEEGDI LVHSAPLLTE KTFNKLVGKF SQSVFHLNLT bmy_01444T0/1-1014 LVSNSKTRAI YYMWYEEGDI LVHSAPLLTE KTFNKLVGKF SQSVFHLNLT BACU013633/1-1709 LVSNSKTQAI YYMW------ ---------- -TFNKLVGKF SQSVFHLNLT 751 800 ENSP00000288912/1-1149 QILSATMEGK LVVWDIHRPP SSASTFLGFP YIKPCKLVHL QKEGITVLTT ENSBTAP00000005477/1-1164 QILSATMEGK LVVWDIYRPL PSASSSMGFP HIKPCKLVHL QKEGITVLTT ENSTTRP00000002837/1-1135 QILSATMEGK LVVWDIYRPP PSASTSLGFP HITPCKLVHL QKEGITVLTT bmy_01444T0/1-1014 QILSATMEGK LVVWDIYRPP PSASTSSGFP HITPCKLVHL QKEGITVLTT BACU013633/1-1709 QILSATLEGK LVVWDIYRPP PSASTSSGFP HITPCKLVHL QKEGITVLTT 801 850 ENSP00000288912/1-1149 IDSYIVTGDI KGNIKFYDHT LSIVNWYSHL KLGAIRTLSF SKTPATPPTE ENSBTAP00000005477/1-1164 VDSYIVTGDI RGNIKFYDHT LSIVNWYSHF KLSSIRSLSF SKTPAAPPAE ENSTTRP00000002837/1-1135 VDSYVVTGDI RGNIKFYDHT LSIVNWYSHF KLSSIRSLSF SKTPATPPTE bmy_01444T0/1-1014 VD-------- ---------- -------SHF KLSSIRSLSF SKTPATPPTE BACU013633/1-1709 VDSYIVTGDI RGNIKFYDHS LSIVNWYSHF KLSSIRSLSF SKTPATPPTE 851 900 ENSP00000288912/1-1149 KSNYPPDCTL KGDLFVLRNF IIGTSDAAVY HLTTDGTKLE KLFVEPKDAI ENSBTAP00000005477/1-1164 NTNYPPDCTL KSDDFVVRNF IIGTSDASVY HLTVDGTKLE KLFVEPRDAI ENSTTRP00000002837/1-1135 NTNYPPDYTL KGDLFIVRNF IIGTSDASVY H-TADGTKLX XXXXXXXXXX bmy_01444T0/1-1014 NTNYPPDCTL KGDLFIVRNF IIGTSDASVY HLTADGTKLE KLFVEPKDAI BACU013633/1-1709 NTNYPPDCTL KGDLFIVRNF IIGTSDASVY HLTADGTKLE KLFVEPKDAI 901 950 ENSP00000288912/1-1149 CAISCHPYQP LIAIGSICGM IKVWNYENKQ YLFSRVFEKG LGVQSLTYNP ENSBTAP00000005477/1-1164 CAISCHPYQP LIAIGSFCGM IKVWDYEQKK YLFSRVFEKG LGVQSLTYNP ENSTTRP00000002837/1-1135 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_01444T0/1-1014 CAISCHPYQP LIAIGSFCGM IKVWDYEQKK YLFSRIFEKR LGVQ------ BACU013633/1-1709 CAISCHPYQP LIAIGSFCGM IKVWDYEQKK YLFSRIFEKG LGVQSLTYNP 951 1000 ENSP00000288912/1-1149 EGALLGAGFT EGTVYILDAM SLENESPEPF KYSRTSVTHI SFSHDSQYMA ENSBTAP00000005477/1-1164 EGALLGAGFT EGTVYILDAM SLESAISEPF RYSRSSVTHI SFSHDSQYMA ENSTTRP00000002837/1-1135 XXALLGAGFT EGTVYILDAM SLESETPEPF KYSRTSVTHV SFSHDSQYMA bmy_01444T0/1-1014 ---------- ---------- --KSEIPEPF KYSRTSVTHV SFSHDSQYMA BACU013633/1-1709 EGALLGAGFT EGTVYILDAM SLESEIPEPF KYSRTSVTHV SFSHDSQYMA 1001 1050 ENSP00000288912/1-1149 TADRSFTVAV YMLVVRNGQR VWEYLARLRS HRKSIRSLLF GVYLDSNEPR ENSBTAP00000005477/1-1164 TADVSFTVAV YVVRVKHRRR VWEYLARLRS HRKSIRSILF GVHLDSNEPR ENSTTRP00000002837/1-1135 TADVSFTVAV YVVRVKNGRR VWEYLARLRS HRKSIRSVLF GVHLDSNEPR bmy_01444T0/1-1014 TADVSFTVAV YVVRVKNGRR VWEYLARLRS HRKSIRSVLF G--------- BACU013633/1-1709 TADVSFTVAI YMVRVKNGRR VWEYLARLRS HRKSIRSVLF GVHLDSNEPR 1051 1100 ENSP00000288912/1-1149 LLSLGTDRLL IEYDLLRSYK DHLEVLDIHH TDQGCYPTCM VWYPPLTREL ENSBTAP00000005477/1-1164 LLSLGRDRLL IEYNLLKSYK DHLAVLDIHR TDQGSYPTCM VWYPPLTKEL ENSTTRP00000002837/1-1135 LLSLGRDRLL IEYNLLKSYK DHLEVLDIQR TDQGSYPTCM VWYPPLTKEL bmy_01444T0/1-1014 ---------- IEYNLLKSYK DHLEVLDIHR TDQGNYPTCM VWYPPLTKEL BACU013633/1-1709 LLSLGRDRLL IEYNLLKSYK DHLEVLDIHR TDQGNYPTCM VWYPPLTKEL 1101 1150 ENSP00000288912/1-1149 FLLICNSGYK VKLFNATTKM CRKTLLGPAY GSPIEQTQVL PVRSMAELQK ENSBTAP00000005477/1-1164 FLLICNSGYK VKLFNSTTKM CRKTLLGPVY GSPIEQIQIL PVKSTLELQK ENSTTRP00000002837/1-1135 FLLICNSGYK VKLFNSTTKM CRKTLLGPVY GSPIEQIQIL PVKTPLELQK bmy_01444T0/1-1014 FLLICNSGYK VKLFNSTTKM CRKTLLGPVY GSPIEQIQIL PVKTPLELQK BACU013633/1-1709 FLLICNSGYK VKLFNSTTKM CRKTLLGPVY GSPIEQIQIL PVKTSLELQK 1151 1200 ENSP00000288912/1-1149 RYLVFINRDK VGLQILPVDG NPHKTSAIVC HPNGVAGMAV SYDGCYAFTA ENSBTAP00000005477/1-1164 RYVVFINRDK VGLQILPVDG NPHKTSALIC HPNGVAGMAL SYDGCCAFTA ENSTTRP00000002837/1-1135 RYMVFINRDK VGLQILPVDG NPHKTSALIC HPSGAAGMDV SYDGRYTFTA bmy_01444T0/1-1014 RYMVFINRDK VGLQILPVDG NPHKTSALIC HPSGAAGMDV SYDGRYAFTA BACU013633/1-1709 RYMVFVNRDK VGLQILPVDG NPHKTSAFIC HPSGVAGMDV SYDGRYAFTA 1201 1250 ENSP00000288912/1-1149 GGHDRSVVQW KITLSVLEAA VSLGGEDLTP FYGLLSGGRE GKFYRELEDY ENSBTAP00000005477/1-1164 GGQDRSVVQW EINLSALEAA VSLGGEDLTP FYGLVSGGRE GKFYRELEDY ENSTTRP00000002837/1-1135 GGQDRSVVQW EINLSALEAA VSLGGEDLTP FYGLVSGXXX XXXXXXXXXX bmy_01444T0/1-1014 GGQDRSVVQW EINLSALEAA VSLGGEDLTP FYGLVSGGRE GKFYRELEDY BACU013633/1-1709 GGQDRTVVQW EINLSALEAA VSLGGEDLTP FYGLVSGGRE GKFYRELEDY 1251 1300 ENSP00000288912/1-1149 FYYSQLRSQG IDTMETRKVS EHI--CLSEL PFVMRAIGFY PSEEKIDDIF ENSBTAP00000005477/1-1164 FYYSQLRSQG IDTMETRKVS EHI--CLSEL PFVMRAIGFY PSEGEIEDMF ENSTTRP00000002837/1-1135 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXX--XX XXXXXIEDMF bmy_01444T0/1-1014 FYYSQLRSQG IDTMETREVS EHI--CL--- ---------- ---------- BACU013633/1-1709 FYYSQLRSQG IDTMETRKVS EHI--CLXXX XXXXXX--XX XXEEKIEDMF 1301 1350 ENSP00000288912/1-1149 NEIKFGEYVD TGKLIDKINL PDFLKVYLNH KPPFGNTMSG IHKSFEVLGY ENSBTAP00000005477/1-1164 NEIRFSEYVD TGKLTDKINL PDFFKVYLNH RPPFGNTMSG IQQSFDILGF ENSTTRP00000002837/1-1135 NEIRFSEYVD TGKLIDKINL PDFFKVYLNH RPPFGNTMSG IQRSFDILGF bmy_01444T0/1-1014 ---------- ---------- ---------- ---------- ---------- BACU013633/1-1709 NEIRFSEYVD TGKLIDKINL PDFFRVYLNH RPPFGNTMSG IQRSFDILGF 1351 1400 ENSP00000288912/1-1149 TNSKGKKAIR REDFLRLLVT KGEHMTEEEM LDCFASLFGL NPEGWKSEPA ENSBTAP00000005477/1-1164 TNSKGEKAIQ REDFLNLLHT KGEHMTEEEM TDCFATLFGL NPEGWKSEPA ENSTTRP00000002837/1-1135 TNSKGKKAIR REDFLKLLQT KGEHMTEEEM SDCFATLFGL NPEGWKSEPA bmy_01444T0/1-1014 ---------- ---------- ---------- ---------- ---------- BACU013633/1-1709 TNSKGKKAIR REDFLKLLQT KGEHMTEEEM SDCFATLFGL NPEGWKSEPA 1401 1450 ENSP00000288912/1-1149 TCSVKGSEIC LEEELP---- -------DEI TAEIFATEIL GLTISEDSGQ ENSBTAP00000005477/1-1164 ASSVKGSEIC LEEELP---- -------DEI TAEIFTTEIL GLTISQDSGQ ENSTTRP00000002837/1-1135 ASSVKGSEIC FEEELP---- -------DEI TAEIFTTQIL GLTISQDSGQ bmy_01444T0/1-1014 ---------- --SELPFVMR AIGFYPSEEK VGRMKTRTAV GCVIYKNDLR BACU013633/1-1709 ASSVKGSEIC FEEELP---- -------DEI TAEIFTTQIL GLTISQDSGQ 1451 1500 ENSP00000288912/1-1149 DGQ------- ---------- ---------- ---------- ---------- ENSBTAP00000005477/1-1164 DPR------- ---------- ---------- ---------- ---------- ENSTTRP00000002837/1-1135 DGQ------- ---------- ---------- ---------- ---------- bmy_01444T0/1-1014 EQSL------ ---------- ---------- ---------- ---------- BACU013633/1-1709 DPTILVFKAS GFFPLGGGEF SSNHHYKLFA STSDNTEACA VKDSPHSVSV 1501 1550 ENSP00000288912/1-1149 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005477/1-1164 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002837/1-1135 ---------- ---------- ---------- ---------- ---------- bmy_01444T0/1-1014 ---------- ---------- ---------- ---------- ---------- BACU013633/1-1709 LAEGAVGGIV TLGLMQRERL REKKWVTVGD TSLRIYKWVP VTEPKVDDKN 1551 1600 ENSP00000288912/1-1149 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005477/1-1164 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002837/1-1135 ---------- ---------- ---------- ---------- ---------- bmy_01444T0/1-1014 ---------- ---------- ---------- ---------- ---------- BACU013633/1-1709 KNKKKGKDEK CGSEVTTPEN SSSPGMMDMH DDNSNQSSIA DASPIKQENS 1601 1650 ENSP00000288912/1-1149 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005477/1-1164 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002837/1-1135 ---------- ---------- ---------- ---------- ---------- bmy_01444T0/1-1014 ---------- ---------- ---------- ---------- ---------- BACU013633/1-1709 SNSSPAPEPN SAAPGDGTDA KADEAQADGK ELPGAEDASD EQNSQSSMEN 1651 1700 ENSP00000288912/1-1149 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005477/1-1164 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002837/1-1135 ---------- ---------- ---------- ---------- ---------- bmy_01444T0/1-1014 ---------- ---------- ---------- ---------- ---------- BACU013633/1-1709 SMNSSEQVER QPSGDVGLAA ETSTISQVPR SRSQRGSQIG QEPVGVSGVR 1701 1750 ENSP00000288912/1-1149 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005477/1-1164 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002837/1-1135 ---------- ---------- ---------- ---------- ---------- bmy_01444T0/1-1014 ---------- ---------- ---------- ---------- ---------- BACU013633/1-1709 QKVFCCFVSL FALWTIGTVW YSLSGIRGHP SVSELVAGAH GEGGDTRVWP 1751 1800 ENSP00000288912/1-1149 ---------- ---------- ------ ENSBTAP00000005477/1-1164 ---------- ---------- ------ ENSTTRP00000002837/1-1135 ---------- ---------- ------ bmy_01444T0/1-1014 ---------- ---------- ------ BACU013633/1-1709 LGWVLYPSLS LTTLFIRVHK STAWSQ