KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:42 2014 Check: 00 .. Name: ENSTTRP00000002839/1-922 Len: 1052 Check: 4574 Weight: 1.00 Name: ENSP00000312834/1-919 Len: 1052 Check: 3403 Weight: 1.00 Name: bmy_01447T0/1-901 Len: 1052 Check: 2671 Weight: 1.00 Name: BACU013634/1-719 Len: 1052 Check: 7938 Weight: 1.00 Name: ENSBTAP00000005486/1-858 Len: 1052 Check: 9394 Weight: 1.00 // 1 50 ENSTTRP00000002839/1-922 MAADVFMCSP RRPRSRGRAV LLKPQVPEDD DDSDTDEPSP PPASGAATPA ENSP00000312834/1-919 MAADVFMCSP RRPRSRGRQV LLKPQVSEDD DDSDTDEPSP PPASGAATPA bmy_01447T0/1-901 ---------- ---------- ---------- ---------- ---------- BACU013634/1-719 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005486/1-858 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000002839/1-922 RGHASVAPLP PKAGSGSEEP PRRQQIIHSG HFMVSSPHRE HPPKKGYDFD ENSP00000312834/1-919 RAHASAAPPP PRAGPGREEP PRRQQIIHSG HFMVSSPHRE HPPKKGYDFD bmy_01447T0/1-901 ---------- ---------- ---MLYAHIS HFVLRTPCLA RQRVAGRSFR BACU013634/1-719 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005486/1-858 ---------- ---------- XRRQQIIHSG HFMVSSPHRE HPPKKGYDFD 101 150 ENSTTRP00000002839/1-922 TVNKQTCQTY SFGKTSSCHL SIDASLTKLF ECMTLAYXXX XXXXXXXXXX ENSP00000312834/1-919 TVNKQTCQTY SFGKTSSCHL SIDASLTKLF ECMTLAYSGK LVSPKWKNFK bmy_01447T0/1-901 RGERGETTEF P--------- --------LF ---ILPFSGK LVSPKWKNFK BACU013634/1-719 ---------- ---------- --------LF ---ILPFSGK LVSPKWKNFK ENSBTAP00000005486/1-858 TVNKQTCQTY SFGKTSSCHL SIDASLTKLF ECMTLAYSGK LVSPKWKNFK 151 200 ENSTTRP00000002839/1-922 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000312834/1-919 GLKLQWRDKI RLNNAIWRAW YMQYLEKRKN PVCHFVTPLD GSVDVDEHRR bmy_01447T0/1-901 GLKLQWRDKI RLNNAIWRAW YMQYLEKRKN PVCHFVTPLD GSVEVDEHRR BACU013634/1-719 GLKLQWRDKI RLNNAIWRAW YMQYLEKRKN PVCHFVTPLD GSVEVDEHRR ENSBTAP00000005486/1-858 GLKLQWRDKI RLNNAIWRAW YMQYLEKRKN PVCHFVTPLD GSVEVDEHRR 201 250 ENSTTRP00000002839/1-922 XXAITTEGKY WKSRIEIVIR EYHKWRTYFK KRLQQHKDED LSSLAQDDDM ENSP00000312834/1-919 PEAITTEGKY WKSRIEIVIR EYHKWRTYFK KRLQQHKDED LSSLVQDDDM bmy_01447T0/1-901 PEAITTEGKY WKSRIEIVIR EYHKWRTYFK KRLQQHKDED LSSLAQDDDL BACU013634/1-719 PEAITTEGKY WKSRIEIVIR EYHKWRTYFK KRLQQHKDED LSSLAQDDDL ENSBTAP00000005486/1-858 PEAITTEGKY WKSRIEIVIR EYHKWRTYFK KRLQQHKDED LSSLAQDDDM 251 300 ENSTTRP00000002839/1-922 LYWHKHGDGW KTPVPMEEDT LLNTDMLMSE FSDTLFSTLS SHPPVAWPNP ENSP00000312834/1-919 LYWHKHGDGW KTPVPMEEDP LLDTDMLMSE FSDTLFSTLS SHQPVAWPNP bmy_01447T0/1-901 LYWHKHGDGW KTPVPMEEDA LLSTDMLMSE FSDTLFSTLS SHPPVAWPNP BACU013634/1-719 LYWHKHGDGW KTPVPMEEDA LLSTDMLMSE FSDTLFSTLS SHPPVAWPNP ENSBTAP00000005486/1-858 LYWHKHRDGW KTPVPMEEDT LLDTDMLMSE FSDTLFSTLS SHPPVAWPNP 301 350 ENSTTRP00000002839/1-922 REIAHLGNAD MIQPGLIPLQ PNLDFMDTFE PFQDLFSSSR SI-SSMLPAP ENSP00000312834/1-919 REIAHLGNAD MIQPGLIPLQ PNLDFMDTFE PFQDLFSSSR SIFGSMLPAS bmy_01447T0/1-901 REIAHLGNAD MIQPGLIPLQ PNLDFMDTFE PFQDLFSSSR SIFGSMLPAP BACU013634/1-719 REIAHLGNAD MIQPGLIPLQ PNLDFMDTFE PFQDLFSSSR SIFGSMLPAP ENSBTAP00000005486/1-858 REIAHLGNAD MIQPGLIPLQ PNLDFMDTFE PFQDLFSSSR SIFGSMLPAP 351 400 ENSTTRP00000002839/1-922 SG--APDHNS PPAQESILPT TA----LPTP SLPDGFIAPP AATALDPTSG ENSP00000312834/1-919 ASAPVPDPNN PPAQESILPT TA----LPTV SLPDSLIAPP TAPSLAHMDE bmy_01447T0/1-901 ASGPAPDHNS PPA-ESILPT TT----LPTA SLPDGFIAPP AATALDPTRG BACU013634/1-719 ASGPAPDPNS PPA-ESILPT TT----LPTA SLPDGFIAPP AATALDPT-- ENSBTAP00000005486/1-858 ASTPAPDPNS PPAQESILPT TALPTDLPTA SLPDSFIAPP AAAALDPTSG 401 450 ENSTTRP00000002839/1-922 QGCEHTSQPG DPFLQPADLG PSAPPLSVPQ PFLPVFTMPL LSPSPAPAPA ENSP00000312834/1-919 QGCEHTSRTE DPFIQPTDFG PSEPPLSVPQ PFLPVFTMPL LSPSPAPPPI bmy_01447T0/1-901 QGCEHTSQPG DPFLQPADLG PSAPPLSVPQ PFLPVFTMPL LSPSPAPAPA BACU013634/1-719 ---------- -----PRARA SSSPPTT--- ---------- ------PPPP ENSBTAP00000005486/1-858 QGCEHPPQPG DPFMQPADLG PSAPPLSGPQ PYLPVFTLPL LSPSPAPPPP 451 500 ENSTTRP00000002839/1-922 SPVLPLGPPP ATALNPPTPP AFLQPQKFAE VSKSPPVITH TASATLTHDA ENSP00000312834/1-919 SPVLPLVPPP ATALNPPAPP TFHQPQKFAG VNKAPSVITH TASATLTHDA bmy_01447T0/1-901 SPILPLGPPP ATALNPPTPP AFLQPQKFAE VSKSPPVITH TASATLTHDA BACU013634/1-719 ---------- ---------- ---------- ---------- TASATLTHDA ENSBTAP00000005486/1-858 SPVLPLGPPP ATALNPPTPP TFLQPQKFAE AGKSPSVITH TASATLTHDA 501 550 ENSTTRP00000002839/1-922 SATTFSQSQG LIITTHYPTP SVSPCGLALS PVSRPPTVGP PQPRLTFVHP ENSP00000312834/1-919 PATTFSQSQG LVITTHHPAP SAAPCGLALS PVTR-----P PQPRLTFVHP bmy_01447T0/1-901 SATTFSQSQG LIITTHYPTP SVSPCGLALS PVTRPPTVGP PQPRLTFVHP BACU013634/1-719 SATTFSQSQG LIITTHYPTP SVSPCGLALS PVTRPPAVGP PQPRLTFVHP ENSBTAP00000005486/1-858 SATTFSQSQG LIITTRYPPP SGSPYGLALS PVTRPPTVGP PQPRLTFVHP 551 600 ENSTTRP00000002839/1-922 KPVSLPGGRH KQPPKIVPAP KPEPVSLVLQ KARLGP-AT- ------FSGQ ENSP00000312834/1-919 KPVSLTGGRP KQPHKIVPAP KPEPVSLVLK NARIAP-AA- ------FSGQ bmy_01447T0/1-901 KPVSLPGGRH KQPPKIVPAP KPEPMSLVLK NACLAPGESG GGKQVGFSPR BACU013634/1-719 KPVSLPGGRH KQPPKIVPAP KPEPMSLVLK NACLAP-AA- ------FSGQ ENSBTAP00000005486/1-858 KPVSLPGGRH KQPPKIVPAP KPEPVSVVLK NACLTPAAA- ------FPGQ 601 650 ENSTTRP00000002839/1-922 PQ-------- ---------- ---------- ---------- --AVIMTS-- ENSP00000312834/1-919 PQ-------- ---------- ---------- ---------- --AVIMTS-- bmy_01447T0/1-901 PHPPPGCFPS PGLQTRDTHI VIGNRRVMKD YMRRSSLFFL FYVVLLVSLN BACU013634/1-719 PQ-------- ---------- ---------- ---------- --AVIMTS-- ENSBTAP00000005486/1-858 PQ-------- ---------- ---------- ---------- --AVIMTS-- 651 700 ENSTTRP00000002839/1-922 ---------- ---------- ---------- -GPLKREGML AS-------- ENSP00000312834/1-919 ---------- ---------- ---------- -GPLKREGML AS-------- bmy_01447T0/1-901 PEKLQKSSFV SIPCGKEVTS QWQQRGRVLL LGPPRPPCSL ASPGIRSRPP BACU013634/1-719 ---------- ---------- ---------- -GPLKREGML AS-------- ENSBTAP00000005486/1-858 ---------- ---------- ---------- -GPLKREGML AS-------- 701 750 ENSTTRP00000002839/1-922 ---------- -------TVS QSNMVITPAA IARAPGV--- ---------- ENSP00000312834/1-919 ---------- -------TVS QSNVVIAPAA IARAPGV--- ---------- bmy_01447T0/1-901 AGPPPSPPPC SGSCLFRTAP SSDHDIRPSE ERRDVGFHRV PVQHGHHACC BACU013634/1-719 ---------- -------TVS QSNMVITPAA IARAPGV--- ---------- ENSBTAP00000005486/1-858 ---------- -------TVS QSNVVLTPAA LTRAPGV--- ---------- 751 800 ENSTTRP00000002839/1-922 --TEFHSGIL VTDLGHGTGS QSAPISRLFS --STVDSLXX XXXXXXXXXX ENSP00000312834/1-919 --PEFHSSIL VTDLGHGTSS PPAPVSRLFP -STAQDPLGK GEQVPLHGGS bmy_01447T0/1-901 HRQEFHSGIL VTDLGHGTGS QPAPISRLFS PSTVTDSLVK GEQVPPHGGI BACU013634/1-719 --TELRSGVL VTDLGHGTGS QPGALSRLFS PRAAPDSLVK GEQVPPHGGI ENSBTAP00000005486/1-858 --AEFPSSIL VTDLGPGPGS QHAPVSRLFP ----PDSLVK GEQGPLHGGI 801 850 ENSTTRP00000002839/1-922 XXXXXXXXXR DCPNSGQASP CASEQSPSPQ SPQNNCSGKS SADPKNVAAL ENSP00000312834/1-919 PQVTVTGPSR DCPNSGQASP CASEQSPSPQ SPQNNCSGKS --DPKNVAAL bmy_01447T0/1-901 AQVPATGTSR DCPNSGQASP CASEQSPSPQ SPQNNCSGKS SADPKNVAAL BACU013634/1-719 AQVPATGASR DCPNSGQASP CASEQSPSPQ SPQNNCSGKS SADPKNVAAL ENSBTAP00000005486/1-858 AQVPATGAGR DCPNSGQASP CASEQSPSPQ SPQNNCSGKS PADPKNVAVL 851 900 ENSTTRP00000002839/1-922 KNRQMKHISA EQKRRFNIKM GFDTLNSLIS NNTKLTSHAI TLQKTVEYIT ENSP00000312834/1-919 KNRQMKHISA EQKRRFNIKM CFDMLNSLIS NNSKLTSHAI TLQKTVEYIT bmy_01447T0/1-901 KAPLLGLPTW PPPRR----A SFDS------ ---------- ---------- BACU013634/1-719 KNRQMKHISA EQKRRFNIKM GFDTLNSLIS NNTKLTSHAI TLQKTVEYIT ENSBTAP00000005486/1-858 KNRQMKHISA EQKRRFNIKM GFDTLNSLIS NNTKLTSHAI TLQKTVEYIT 901 950 ENSTTRP00000002839/1-922 KLQQERSQMQ EEARRLREEI EELNTTIISC QQLLPATGVP VTRRQFDHMR ENSP00000312834/1-919 KLQQERGQMQ EEARRLREEI EELNATIISC QQLLPATGVP VTRRQFDHMK bmy_01447T0/1-901 ---------- ---------- ---SCRFSSC QQLLPATGVP VTRRQFDHMR BACU013634/1-719 KLQQERSQMQ EEARRLREEI EELNTTIISC QQLLPATGVP VTRRQFDHMR ENSBTAP00000005486/1-858 KLQQERSQMQ EEARRLREEI EELNATILSC QQLLPATGVP VTRRQFDHMR 951 1000 ENSTTRP00000002839/1-922 DMFDEYVKSR TLQNWKFWIF SVIIKPLFES FKGVVSSSSL EELHRTALCW ENSP00000312834/1-919 DMFDEYVKTR TLQNWKFWIF SIIIKPLFES FKGMVSTSSL EELHRTALSW bmy_01447T0/1-901 DMFDEYVKSR TLQNWKFWIF SVIIKPLFES FKGVVSSSSL EELHRTALCW BACU013634/1-719 DMFDEYVKSR TLQNWKFWIF SVIIKPLFES FKGVVSSSSL EELHRTALCW ENSBTAP00000005486/1-858 DMFDEYVKSR TLQNWKFWIF SVIIKPLFES FKGVVSTSSL DELHRTALSW 1001 1050 ENSTTRP00000002839/1-922 LDEHCSLPVL RPTVLNTLRH LSTTTSILTD PSQLPEQAAE AVTRMGQRSG ENSP00000312834/1-919 LDQHCSLPIL RPMVLSTLRQ LSTSTSILTD PAQLPEQASK AVTRIGKRLG bmy_01447T0/1-901 LDEHCSLPVL RPTVLNTLRH LSTTTSILTD PAQLPEQAAE AVTRMGQRSG BACU013634/1-719 LDEHCSLPVL RPTVLNTLRH LSTTTSILTD PAQLPEQAAE AVTRMGQRSG ENSBTAP00000005486/1-858 LDEHCSLPIL RPTVLNTLRH LSTTTSILTD PSQLPEQAAE AVSRISQRAG 1051 1100 ENSTTRP00000002839/1-922 ES ENSP00000312834/1-919 ES bmy_01447T0/1-901 ES BACU013634/1-719 ES ENSBTAP00000005486/1-858 ES