KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:43 2014 Check: 00 .. Name: ENSP00000260526/1-1261 Len: 1270 Check: 6113 Weight: 1.00 Name: ENSBTAP00000005488/1-1269 Len: 1270 Check: 7875 Weight: 1.00 Name: ENSTTRP00000000866/1-1265 Len: 1270 Check: 9545 Weight: 1.00 Name: bmy_05398T0/1-834 Len: 1270 Check: 7927 Weight: 1.00 Name: BACU002798/1-1241 Len: 1270 Check: 1235 Weight: 1.00 // 1 50 ENSP00000260526/1-1261 MIAHKQKKTK KKRAWASGQL STDITTSEMG LKSLSSNSIF DPDYIKELVN ENSBTAP00000005488/1-1269 MIAYKQKKTK KKRVLSTGQL STDVTTSEMG LKSINSNAIL DPDYIKELVN ENSTTRP00000000866/1-1265 MIAHKQKKTK KKRVLSTGQL STDVTTSEMG LKSINSNSIL DPDYIKELVN bmy_05398T0/1-834 ---------- ---------- ---------- ---------- ---------- BACU002798/1-1241 MIAHKQKKTK KKRVLSTGQL STDVTTSEMG LKSLNSNSIL DPDYIKELVN 51 100 ENSP00000260526/1-1261 DIRKFSHMLL YLKEAIFSDC FKEVIHIRLE ELLRVLKSIM NKHQNLNSVD ENSBTAP00000005488/1-1269 DIRKFSHMLL YLKEAILSEC FKEVIHIRLD ELLRVLKSVM NKHQNLNSVD ENSTTRP00000000866/1-1265 DITKFSHVLL YLKEAILS-C FKEVIHIRLD ELLRVLKSVM NKHQNLNSVD bmy_05398T0/1-834 ---------- ---------- ---------- ---------- ---------- BACU002798/1-1241 DIRKFSHVLL YLKEAILSDC FKEVIHIRLD ELLRVLKSVM NKHQNLNSVD 101 150 ENSP00000260526/1-1261 LQNAAEMLTA KVKAVNFTEV NEENKNDLFQ EVFSSIETLA FTFGNILTNF ENSBTAP00000005488/1-1269 LQNAAEMLIA KVKAVNFTEV NEENKNDLFR EVFSSIETLA FTFGNILTNF ENSTTRP00000000866/1-1265 LQNAAEMLAA KVKAVNFTEV NEENKNDLFR EVFSSIETLA FTFGNILTNF bmy_05398T0/1-834 ---------- ---------- ---------- ---------- ---------- BACU002798/1-1241 LQNAAEMLAA KVKAVNFTEV NEDNKNDLFR EVFSSIETLA FTFGNILTNF 151 200 ENSP00000260526/1-1261 LMGDVGNDSL LRLPVSRETK SFENVSVESV DSSSEKGNFS PLELDNVLLK ENSBTAP00000005488/1-1269 LMGDVGNDSL LRLPVSQESK SFESVSVESV DSSNEKGSFS PIELDSMLLK ENSTTRP00000000866/1-1265 LMGDVGNDSL LRLPVSRESK SFENVSVESV DSSSEKGSFS PIELDSMLLK bmy_05398T0/1-834 ---------- ---------- ---------- ---------- ---------- BACU002798/1-1241 LMGDVGNDSL LRLPVSRESK SFENVSVESV DSSSEKGSFS PIELDSMLLK 201 250 ENSP00000260526/1-1261 NTDSIELALS YAKTWSKYTK NIVSWVEKKL NLELESTRNM VKLAEATRTN ENSBTAP00000005488/1-1269 NTNSVELALS YAKTWSKYTK NIVSWVEKKL NLELESTRNI VKLAEATRTN ENSTTRP00000000866/1-1265 NTNSIELALS YAKTWLKYTK NIVSWVEKKL SLELESTRNI VKLAEATRTN bmy_05398T0/1-834 ---------- ---------- ---------- ---------- ---------- BACU002798/1-1241 NTNSIELALS YAKTWLKYTK NIVAWVEKKL SLELESTRNI VKLAEATRTN 251 300 ENSP00000260526/1-1261 IGIQEFMPLQ SLFTNALLND IESSHLLQQT IAALQANKFV QPLLGRKNEM ENSBTAP00000005488/1-1269 IGLQEFMPLQ SLFTNALLND IESSHLLQQT IAALQANKFV QPLLGRKNEM ENSTTRP00000000866/1-1265 IGLQEFMPLQ SLFTNALLND IESSH-LQQT XXXXXXXXXX XXXXXXXXXX bmy_05398T0/1-834 ---------- ---------- ---------- ---------- ---------- BACU002798/1-1241 IGLQEFMPLQ SLFTNALLND IESSHLLQQT IAALQANKFV Q--------- 301 350 ENSP00000260526/1-1261 EKQRKEIKEL WKQEQNKMLE AENALKKAKL LCMQRQDEYE KAKSSMFRAE ENSBTAP00000005488/1-1269 EKQRKEIKEL WKQEQNKMLE TETALKKAKL LCMQRQDEYE KAKSSMFRAE ENSTTRP00000000866/1-1265 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_05398T0/1-834 ---------- ---------- ---------- ---------- ---------- BACU002798/1-1241 ---------- --------LE TETALKKAKL LCMQRQDEYE KAKSSMFRAE 351 400 ENSP00000260526/1-1261 EEHLSSSGGL AKNLNKQLEK KRRLEEEALQ KVEEANELYK VCVTNVEERR ENSBTAP00000005488/1-1269 EEHLSSSSGL VKNLNRQLEK KRRLEEEALQ KVEEANELYK VCVTNVEERR ENSTTRP00000000866/1-1265 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XVEEANEHYK VCVTNVEERR bmy_05398T0/1-834 ---------- ---------- ---------- ---------- ---------- BACU002798/1-1241 EEHLCSSGGL VKNLNRQLEK KRRLEEEALQ KVEEANELYK VCVTNVEERR 401 450 ENSP00000260526/1-1261 NDLENTKREI LAQLRTLVFQ CDLTLKAVTV NLFHMQHLQA ASLADSLQSL ENSBTAP00000005488/1-1269 NDLENTKREI LTQLRKLVFQ CDLTLKAVTV NLFQMQQLQA ASLSSNLQSL ENSTTRP00000000866/1-1265 NDLENTKREI LTQLRKLVFQ CDLTLKAVTV NLFQMQHLQA ASLANNLQSL bmy_05398T0/1-834 ---------- ---------- ---------- ----MQHLQA ASLANNLQSL BACU002798/1-1241 NDLENTKREI LTQLRKLVFQ CDLTLKAVTV NLFQMQHLQA ASLANNLQSL 451 500 ENSP00000260526/1-1261 CDSAKLYDPG QEYSEFVKAT NSTEEEKVDG NVNKHL-NSS QPSGFGPANS ENSBTAP00000005488/1-1269 CDSAKLYDPG QEYSEFVRAT NSAEEEKVDG NVNKQL-SSP PISGYGPSDS ENSTTRP00000000866/1-1265 CDGAKLYDPG QEYSEFVRAT NSAEEEKVDG NVNKQLTNTP HTPGYGPSDS bmy_05398T0/1-834 CDGAKLYDPG QEYSEFVRAT NSAEEEKVDG NVNKQLTNTP HTSGYGPSNS BACU002798/1-1241 CDGAKLYDPG QEYSEFVRAT NSAEEEKVDG NVNKQLTNTP HTSGYGPSDS 501 550 ENSP00000260526/1-1261 LEDVVRLPDS SNKIEEDRCS NSADITGPSF IRSWTFGMFS DSESTGGSSE ENSBTAP00000005488/1-1269 LEDVVRLPDS SNKMEEDRCS NSADITGPSF LRSWTFGMFS DSESTGGSSE ENSTTRP00000000866/1-1265 LEDVVRLPDN SNKIEEDRCS NSADISGPSF IRSWTFGMFS DSESTGGSSE bmy_05398T0/1-834 LEDVVRLPDN SNKIEEDRCS NSADISGPSF IRSWTFGMFS DSESTGGSSE BACU002798/1-1241 LEDVVRLPDN SNKIEEDRCS NSADISGPSF IRSWTFGMFS DSESTGGSSE 551 600 ENSP00000260526/1-1261 SRSLDSESIS PGDFHRKLPR TPSSGTMSSA DDLDEREPPS PSETGPNSLG ENSBTAP00000005488/1-1269 SRSLDSESIS PGDFHRKLPR TPSSGTMSSA DDLDEREPPS PSEAGPNSLG ENSTTRP00000000866/1-1265 SRSLDSESIS PGDFHRKLPR TPSSGTMSSA DDLDEREPPS PSEAGPNSLG bmy_05398T0/1-834 SRSLDSESIS PGDFHRKLPR TPSSGTMSSA DDLDEREPPS PSEAGPNSLG BACU002798/1-1241 SRSLDSESIS PGDFHRKLPR TPSSGTMSSA DDLDEREPPS PSEAGPNSLG 601 650 ENSP00000260526/1-1261 TFKKTLMSKA ALTHKFRKLR SPTKCRDCEG IVVFQGVECE ECLLVCHRKC ENSBTAP00000005488/1-1269 TFKKTLMSKA ALTHKFRKLR SPTKCRDCEG IVVFHGVECE ECLLVCHRKC ENSTTRP00000000866/1-1265 TFKKTLMSKA ALTHKFRKLR SPTKCRDCEG IVVFQGVECE ECLLVCHRKC bmy_05398T0/1-834 TFKKTLMSKA ALTHKFRKLR SPTKCRDCEG IVVFQGVECE ECLLVCHRKC BACU002798/1-1241 TFKKTLMSKA ALTHKFRKLR SPTKCRDCEG IVVFQGVECE ECLLVCHRKC 651 700 ENSP00000260526/1-1261 LENLVIICGH QKLPGKIHLF GAEFTQVAKK EPDGIPFILK ICASEIENRA ENSBTAP00000005488/1-1269 LENLVIICGH QKLMGKIHLF GAEFTQVAKK EPDGIPFVLK MCASEIENRA ENSTTRP00000000866/1-1265 LENLVIICGH QKLLGKIHLF GAEFTQVAKK EPDGIPFVLK ICASEIENRA bmy_05398T0/1-834 LENLVIICGH QKLLGKIHLF GAEFTQVAKK EPDGIPFVLK ICALEIENRA BACU002798/1-1241 LENLVIICGH QKLLGKIHLF GAEFTQVAKK EPDGIPFVLK ICALEIENRA 701 750 ENSP00000260526/1-1261 LCLQGIYRVC GNKIKTEKLC QALENGMHLV DISEFSSHDI CDVLKLYLRQ ENSBTAP00000005488/1-1269 LSLQGIYRVC GNKIKTEKLC QALENGMHLV DISEFSSHDI CDVLKLYLRQ ENSTTRP00000000866/1-1265 LCLQGIYRVC GNKIKTEKLC QALENGMHLV DISEFSSHDI CDV-XXXXXX bmy_05398T0/1-834 LCLQGIYRVC GNKIKTEKLC QALENGMHLV DISEFSSHDI CDVLKLYLRQ BACU002798/1-1241 LCLQGIYRVC GNKIKTEKLC QALENGMHLV DISEFSSHDI CDVLKLYLRQ 751 800 ENSP00000260526/1-1261 LPEPFILFRL YKEFIDLAKE IQHVNEEQET KKNSLEDKKW PNMCIEINRI ENSBTAP00000005488/1-1269 LPEPFILFRL YKEFIDLAVE IQHVNEEQEM KKDNPEDKKW PSSSIEISRI ENSTTRP00000000866/1-1265 LPEPFILFRL YKEFIDLAIE IQHVNEEQEM KKDNPEDKKC PSTCIEINRI bmy_05398T0/1-834 LPEPFILFRL YKEFIDLAIE IQHVNEEQEM KKDNPEDKKC PSTCIEINRI BACU002798/1-1241 LPEPFILFRL YKEFIDLAIE IQHVNEEQEM KKDNPEDKKC PSTCIEVNRI 801 850 ENSP00000260526/1-1261 LLKSKDLLRQ LPASNFNSLH FLIVHLKRVV DHAEENKMNS KNLGVIFGPS ENSBTAP00000005488/1-1269 LLKSKDLLRQ LPASNFNSLH YLIVHLKRVV DHSEENKMNS RNLGVIFGPS ENSTTRP00000000866/1-1265 LLKSKDLLRQ LPASNFNSLH YLIVHLKRVV DHAEENKMNS RNLGVIFGPS bmy_05398T0/1-834 LLKSKDLLRQ LPASNFNSLH YLIVHLKRVV DHAEENKMNS RNLGVIFGPS BACU002798/1-1241 LLKSKDLLRQ LPASNFNSLH YLIVHLKRVV DHAEENKMNS RNLGVIFGPS 851 900 ENSP00000260526/1-1261 LIRPRPTTAP ITISSLAEYS NQARLVEFLI TYSQKIFDGS LQPQDVM-CS ENSBTAP00000005488/1-1269 LLRPRPTTAP ITISSLADYS NQARLVEFLI TYSQKIFDGS LQPQDSAVGS ENSTTRP00000000866/1-1265 LIRPRPTAAP ITISSLADYS NQARLVEFLI TYSQKIFDGS LQPQDIAVCS bmy_05398T0/1-834 LIRPRPTTAP ITISSLADYS NQARLVEFLI TYSQKIFDGS LQPQDVAVCS BACU002798/1-1241 LIRPRPTTAP ITISSLADYS NQARLVEFLI TYSQKIFDGS LQPQDVAVCS 901 950 ENSP00000260526/1-1261 IG----VVDQ GCFPKPLLSP EERDIERSMK SLFFSSKEDI HTSESESKIF ENSBTAP00000005488/1-1269 AGGIAPQVDP GYLPKSLLSP EERDPERSMK SLFFSSKEDI QTTDSECKSF ENSTTRP00000000866/1-1265 AGGGAPQVDQ GYLPKPLLSP EERDPEHSTK SLFFSSKEDI HTADNESKSF bmy_05398T0/1-834 AGGGAPQVDQ GYLPKPLLSP EERDPEHSAK SLFFSSKEDI HTADSESKSF BACU002798/1-1241 AGGGAPQVDQ GYLPKPLLSP EERDPEHSAK SLFFSSKEDI HTADSESKSF 951 1000 ENSP00000260526/1-1261 ERATSFEESE RKQNALGKCD ACLSD-KAQL LLDQEAESAS QKIEDG-KTP ENSBTAP00000005488/1-1269 ESTPSFEESE RKQNALEKCD AYLIDNKGRL LVDQELESAS RKTEDACKTS ENSTTRP00000000866/1-1265 ESTASFEESE RKQNAFEKCD ACLLDNKVRL LVDQELESAS QKMEDVCKTS bmy_05398T0/1-834 ESTASFEESE RKQNAFEKCD ACLIDNKVRL LVDQELESAS QKMEDVCKTS BACU002798/1-1241 ESTASFEESE RKQNAFEKCD ACLIDNKVRL LVDQELESAS QKMEDVCKTS 1001 1050 ENSP00000260526/1-1261 KPLSLKSDRS TNNVERHTPR TKIRPVSLPV DR-LLLASPP NERNGRNMGN ENSBTAP00000005488/1-1269 KLPTLKSDRE INGVERHLPR TRIRPVSLPI DRLLLLASSP TERNGRNMGN ENSTTRP00000000866/1-1265 KLPTLKSDRE INGVERHTPR TKIRPVSLPV DRLLLLASSP NERTGRNMGN bmy_05398T0/1-834 KLPTLKSDRE INGVERHTPR TKIRPVSLPI DRRLLLASSP NERNGRNMGN BACU002798/1-1241 KLPTLKSDRE INGVERHTPR TKIRPVSLPI DRRLLLASSP NERNGRNMGN 1051 1100 ENSP00000260526/1-1261 VNLDKFCKNP AFEGVNRKDA ATTVCSKFNG FDQQTLQKIQ DKQYEQNSLT ENSBTAP00000005488/1-1269 VNSDKLCKNP VFEGVNRKDS PTVVCSKFDG FDQQTLQKTR EKQYEQNDHT ENSTTRP00000000866/1-1265 VNSDKFCKNP TFEGVNRKDT PTIVCSKFDG FDQQPLQKTR EKRYEQNDLT bmy_05398T0/1-834 VNSDKFCKNP TFEGVNRKDT PTIVCSKFDG FDQQPLQKTR EKRYEQNDLT BACU002798/1-1241 VNSDKFCKNP TFEGVNRKDT PTIVCSKFDG FDQQPLQKTR EKRYEQNDLT 1101 1150 ENSP00000260526/1-1261 AKTTMIMPSA LQEKGVTTSL QISGDHSINA TQPSKPYAEP VRSVREASER ENSBTAP00000005488/1-1269 AKTGMIVPSA FQERGVALNI RSSGDHPVSI TQPSKPYTEP VRSTRQVSER ENSTTRP00000000866/1-1265 AKTAVIVPSA FQEREMSVSI RSGGDHPVST T--SKPYTEP IRSARQVSER bmy_05398T0/1-834 AKTAVIVPSA FQEREVSVSI RSGGDHPVST T--SKPYTEP IRSARQVSER BACU002798/1-1241 AKTAVIVPSA FQEREVSVSI RSGGDHPLST T--SKPYTEP IRSARQVSER 1151 1200 ENSP00000260526/1-1261 RSSDSYPLAP VRAPRTLQPQ HWTTFYKPHA PIISIRGNEE KPASPSAAVP ENSBTAP00000005488/1-1269 RSSDSCPPAS VRTPRTLQPQ HWTTFYKPPA PAASGRGDEE KPVTPSVAVP ENSTTRP00000000866/1-1265 RSSDSCPPAP VRAPRTLQPQ HWTTFYKPPA PAASGRGDEE KSVTSSAAVP bmy_05398T0/1-834 RSSDSCPPAP VRAPRTLQPQ HWTTFYKPPA PAASGRGNEE KSVTSSAAVP BACU002798/1-1241 RSSDSCPPAP VRAPRTLQPQ HWTTFYKPPA PAASGRGDEE KSVTTSAAVP 1201 1250 ENSP00000260526/1-1261 PGTDHDPHGL VVKSMPDPDK ASACPGQATG QPKEDSEELG LPDVNPMCQR ENSBTAP00000005488/1-1269 PGTTHAPQEH VLKSVPGSEN ASAGPVHPVS RPEEKAEERD QPDVPTACQR ENSTTRP00000000866/1-1265 PCTTHAPQEH ALKSVPGSEN ASAGPVQPVS KPKEKAEERD LPGVHPACQR bmy_05398T0/1-834 PCTTHAPQEH ALKSVPGSEN ASAGPVQPVS KPKEKAEERD LPGVHPACQR BACU002798/1-1241 PCTTHAPQEH TLKSVPGSEN ASAGPVQPVS KPKEKAEERD LPGVHPACQR 1251 1300 ENSP00000260526/1-1261 PRLKRMQQFE DLEGEIPQFV ENSBTAP00000005488/1-1269 PRLKRMQQFE DLEDEIPQFV ENSTTRP00000000866/1-1265 PRLKRMQQFE DLEDEIPQFV bmy_05398T0/1-834 PRLKRMQQFE DLEDEIPQFV BACU002798/1-1241 PRLKRMQQFE DLEDEIPQFV