KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:45 2014 Check: 00 .. Name: bmy_01451T0/1-195 Len: 278 Check: 5093 Weight: 1.00 Name: ENSP00000398495/1-239 Len: 278 Check: 236 Weight: 1.00 Name: ENSBTAP00000005496/1-238 Len: 278 Check: 3624 Weight: 1.00 Name: BACU013637/1-237 Len: 278 Check: 8571 Weight: 1.00 Name: ENSTTRP00000014965/1-237 Len: 278 Check: 1342 Weight: 1.00 // 1 50 bmy_01451T0/1-195 MPASTTIHVL QLLRELLAFV LLSYTVLIGA LLLAGWTTYF MVGGCALLNL ENSP00000398495/1-239 MAA------- ---------- ---------- --LKSWLSR- --------SV ENSBTAP00000005496/1-238 MAA------- ---------- ---------- --LRSWLSR- --------SV BACU013637/1-237 MAA------- ---------- ---------- --LRSWLSR- --------SV ENSTTRP00000014965/1-237 MAA------- ---------- ---------- --LRSWLSR- --------SV 51 100 bmy_01451T0/1-195 SSVSRYKQ-- CVPVVANGEK RCFSELIRPW HKAVAAGFGV TLCAVPIAQ- ENSP00000398495/1-239 TSFFRYRQCL CVPVVANFKK RCFSELIRPW HKTVTIGFGV TLCAVPIAQK ENSBTAP00000005496/1-238 SSLFRYRQ-- CVPVVANFKK RCFSELIRPW HKTVAVGFGV TLCAVPIAQK BACU013637/1-237 ASFFRYRQ-- RVPVVANCEK RCFSELIRPW HKAVAAGFGV ALCAVPIAQK ENSTTRP00000014965/1-237 AFFFRYKR-- CVPVVANCEK RRFSELIRPW HKTVAAGFGV TLCAVPIAQK 101 150 bmy_01451T0/1-195 ---------- ---------- ---------- ---------- ---AVYILIS ENSP00000398495/1-239 SEPHSLSSEA LMRRAVSLVT DSTSTFLSQT TYALIEAITE YTKAVYTLTS ENSBTAP00000005496/1-238 PEPHSLSNDT LMRRAVSLVT DSTSTFLSQT TYALIEAITE YTKAVYTLIS BACU013637/1-237 PEPHSLSNDA LMRRAVSLVT DSTSTFLSQT TYALIEAITE YTKAVYILIS ENSTTRP00000014965/1-237 PEPHSLSNDA LTRRAVSLVT DSTSTFLSQT TYALIEAITE YTKAVYTLSS 151 200 bmy_01451T0/1-195 LYRQYTSLLG KMNSQEEDEV WQVIIGARVE MTSKQQEYLK LETTWMTAVS ENSP00000398495/1-239 LYRQYTSLLG KMNSEEEDEV WQVIIGARAE MTSKHQEYLK LETTWMTAVG ENSBTAP00000005496/1-238 LYRQYTSLLG KMNSQEEDEV WQVIIGARVE MTSKQQEYLK LETTWMTAVS BACU013637/1-237 LYRQYTSLLG KMNSQEEDEV WQVIIGARVE MTSKQQEYLK LETTWMTAVS ENSTTRP00000014965/1-237 LYRQYTSLLG KMNSQEEDAV WQVIIGARVE MTSKQQEYLK LETTWMTAVS 201 250 bmy_01451T0/1-195 LSEMAAEAAY QTG------- -RLKFLLWRC CLS------- --------FH ENSP00000398495/1-239 LSEMAAEAAY QTGADQASIT ARNHIQLVKL QVEEVHQLSR KAETKLAEAQ ENSBTAP00000005496/1-238 LSEMAAEAAY QTGADQASIT ARSHIQLVKS QVQEVRQLSQ KAETKLAEAQ BACU013637/1-237 LSEMAAEAAY QTGADQASVT ARSHIQLVRS QVQEVRQLSQ KAETKLAEAQ ENSTTRP00000014965/1-237 LSEMAAEAAY QTGADQASVT ARSHIQLVRS QVQEVRQLSQ KAETKLAEAQ 251 300 bmy_01451T0/1-195 XAEFCGKMF- ---------P FPIY---- ENSP00000398495/1-239 IEELRQKTQE EGEERAES-E QEAYLRED ENSBTAP00000005496/1-238 TEELRQKTQE DGSERAEPEE QEAYLRED BACU013637/1-237 TEELRQKTQE EGDERAEP-E QEAYLRED ENSTTRP00000014965/1-237 TEELRQKTQE EGDERAEP-E QEAYLRED