KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:45 2014 Check: 00 .. Name: ENSP00000351644/1-524 Len: 540 Check: 7472 Weight: 1.00 Name: ENSBTAP00000005506/1-493 Len: 540 Check: 9085 Weight: 1.00 Name: ENSTTRP00000002943/1-522 Len: 540 Check: 7920 Weight: 1.00 Name: bmy_02592T0/1-368 Len: 540 Check: 998 Weight: 1.00 Name: BACU016688/1-494 Len: 540 Check: 144 Weight: 1.00 // 1 50 ENSP00000351644/1-524 MWRGLWTLAA QAARGP--RR LCTRRSSGAP APGSGATIFA LSSGQGRCGI ENSBTAP00000005506/1-493 MWRGLWTLVS RAARGPHSPR LCTRQGSGYR APGSGATIFA LSSGQGRCGI ENSTTRP00000002943/1-522 MWRGLWTLVA RAARGP--RR PCTRQGSGAP APGSGATVFA LSSGQGRCGI bmy_02592T0/1-368 ---------- --------PR PCTRQGSGAP APGSGATIFA LSSGQGRCGI BACU016688/1-494 MWRGLWTLVA RAARGPRSPR PCTRQGSGAP APGSGATIFA LSSGQGRCGI 51 100 ENSP00000351644/1-524 AVIRTSGPAS GHALRILTAP RDLPLARHAS LRLLSDPRSG EPLDRALVLW ENSBTAP00000005506/1-493 AVIRTSGPAS GHALQSLTAP RDLPLARKAC LRLLSDPRSG EPLDRALVLW ENSTTRP00000002943/1-522 AVIRTSGPAS GQALRSLTAP RDLPPARKAC LRLLSDPRSG EPLDRALVLW bmy_02592T0/1-368 AVIRTSGPAS GQALRSLTAP RDLPPARKAC LRLLSDPRSE EPLDRALVLW BACU016688/1-494 AVIRTSGPAS GQALRSLTAP RDLPPARKAC LRLLSDPRSE EPLDHALVLW 101 150 ENSP00000351644/1-524 FPGPQSFTGE DCVEFHVHGG PAVVSGVLQA LGSVPGLRPA EAGEFTRRAF ENSBTAP00000005506/1-493 FPGPQSFTGE DCAEFHVHGG PAVVSGVLQA LGSVPGLRPA EAGEFTRRAF ENSTTRP00000002943/1-522 FPGPQSFTGE DCAEFHVHGG PAVVSGVLQA LGSVPGLRPA EAGEFTRRAF bmy_02592T0/1-368 FPGPQSFTGE DCAEFHVHGG PAV------- ---------- ---------- BACU016688/1-494 FPGPQSFTGE DCAEFHVHGG PAVVSGVLQA LGSVPGLRPA EAGEFTRRAF 151 200 ENSP00000351644/1-524 ANGKLNLTEV EGLADLIHAE TEAQRRQALR QLDGELGHLC RGWAETLTKA ENSBTAP00000005506/1-493 AHGKLSLTEV EGLADLIHAE TEAQRRQALR QLDGELGDLC RGWAETLTKA ENSTTRP00000002943/1-522 AHGKLSLTEV EGLADLIHAE TEAQRRQALR QLDGELSHLC RGWAETLTKA bmy_02592T0/1-368 ---------- ---------- ---------- ---------- ---------A BACU016688/1-494 AHGKLSLTEV EGLADLIHAE TEAQRRQALR QLDGELSHLC RGWAETLTKA 201 250 ENSP00000351644/1-524 LAHVEAYIDF GEDDNLEEGV LEQGGSTW-- WWGRKTPHIS PQRLPSLSLS ENSBTAP00000005506/1-493 LAHVEAYIDF SEDDNLEEGV LDQ------- ---------- ---------- ENSTTRP00000002943/1-522 LAHVEAYIDF GEDDNLEEGV LDRGGSACPG AWEVGTFHLS PPRSL---LP bmy_02592T0/1-368 LAHVEAYIDF GEDDNLEEGV LDQGGSAW-G GGGGDIWHLS PQRPP---YS BACU016688/1-494 LAHVEAYIDF GEDDNLEEGV LDQ------- ---------- ---------- 251 300 ENSP00000351644/1-524 ACLLSPTADI EVRALQVALG AHLRDARRGQ RLRSGVHVVV TGPPNAGKSS ENSBTAP00000005506/1-493 -------ADS EVRKLEVALG VHLRDARRGQ RLRSGAHVVV AGPPNAGKSS ENSTTRP00000002943/1-522 L-FPPSTADS EVRELEVALG AHLRDARRGQ RLRSGAHVVV AGPPNAGKSS bmy_02592T0/1-368 LSFPPSTADS EVRELEVALG AHLRDARRGQ RLRSGAHVVV AGPPNAGKSS BACU016688/1-494 -------ADS EVRELEVALG AHLRDARRGQ RLRSGAHVVV AGPPNAGKSS 301 350 ENSP00000351644/1-524 LVNLL----- -------SRK PVSIVSPEPG TTRDVLETPV DLAGFPVLLS ENSBTAP00000005506/1-493 LVNLL----- -------SRK PVSIVSPEPG TTRDVLETPV DLAGFPALLS ENSTTRP00000002943/1-522 LVNLL----- -------SRK PVSIVSPEPG TTRDVLETPV DLAGFPALLS bmy_02592T0/1-368 LVNLLSAWSG GGAQGRGSRK PVSIVSPEPG TTRDVLETPV DLAGFPALLS BACU016688/1-494 LVNLL----- -------SRK PVSIVSPEPG TTRDVLETPV DLAGFPALLS 351 400 ENSP00000351644/1-524 DTAGLREGVG PVEQEGVRRA RERLEQADLI LAMLDASDLA SPSSCNFLAT ENSBTAP00000005506/1-493 DTAGLREGVG PVEQEGVRRA QKRLEQADLI LAVLDASDLA SPASCNFLDT ENSTTRP00000002943/1-522 DTAGLREGVG PVEQEGVRRA QKRLEQADLI LAVLDASDLA SPSSCNFLDT bmy_02592T0/1-368 DTAGLREGVG PVEQEGVRRA QKRLEQADLI LAVLDASDLA SPSSCNFLDT BACU016688/1-494 DTAGLREGVG PVEQEGVRRA QKRLEQADLI LAVLDASDLA SASSCNFLDT 401 450 ENSP00000351644/1-524 VVASVGAQSP SDSSQRLLLV LNKSDLLSPE GPGPGPDLPP HLLLSCLTGE ENSBTAP00000005506/1-493 VVIPAGARNP NGSRQRLLLV LNKSDLLPAG RSDLHPDLPS HLLLSCLTGE ENSTTRP00000002943/1-522 VVIPAGAGSP NGRSQRLLLV LNKSDLLPAG GPDPSADLPP YLLLSCLTGE bmy_02592T0/1-368 VVIPAGAGSP NGSSQRLLLV LNKSDLVPAG GPDPSPDLPP HLLLSCLTGE BACU016688/1-494 VVIPAGAGSP NGSSQRLLLV LNKSDLLPAG GPDPSPDLPP HLLLSCLTGK 451 500 ENSP00000351644/1-524 GLDGLLEALR KELAAVCGDP STDPPLLTRA RHQHHLQGCL DALGHYKQSK ENSBTAP00000005506/1-493 GLDGLLEALK KELAALCGDP STG-PLLTRS RHQHHLRGCL DALGQYKQAK ENSTTRP00000002943/1-522 GLDGLLEALR KELAALCGDP STGPPLLTRA RHQHHLQGCL DALGHYKQAK bmy_02592T0/1-368 GLDGFLEALR KELAAL---- ---------- ---------- ---------- BACU016688/1-494 GLDGFLEALR KELAALCGDP STGPPLLTRA RHQHHLQGCL DALGHYKQAK 501 550 ENSP00000351644/1-524 DLALAAEALR VARGHLTRLT GGGGTEEILD IIFQDFCVGK ENSBTAP00000005506/1-493 DLALAAEALR VARGHLSHLT GGGGTEEILD IIFRDFCVGK ENSTTRP00000002943/1-522 DLALAAEALR VARGHLTRIT GGGGTEEILD IIFQDFCVGK bmy_02592T0/1-368 ---------- ---------- ---------- ---------- BACU016688/1-494 DLALAAEALR VARGHLTRIT GGGGTEEILD IIFRDFCVGK