KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:26:45 2014 Check: 00 .. Name: BACU013638/1-691 Len: 708 Check: 4561 Weight: 1.00 Name: ENSBTAP00000005508/1-596 Len: 708 Check: 9467 Weight: 1.00 Name: bmy_01452T0/1-506 Len: 708 Check: 3409 Weight: 1.00 Name: ENSTTRP00000014969/1-596 Len: 708 Check: 4348 Weight: 1.00 // 1 50 BACU013638/1-691 MATHLSYGRV NLNVLREAVR RELREFLDKC AGSKDLSVPL SNWQYNSEEK ENSBTAP00000005508/1-596 MAAHLSYGRV NLNVLREAVR RELREFLDKC AGSK------ ---------- bmy_01452T0/1-506 MATHLSYGRV NLNVLREAVR RELREFLDKC AGS------- ---------- ENSTTRP00000014969/1-596 MAAHLSYGRV NLNVLREAVR RELREFLDKC AGSK------ ---------- 51 100 BACU013638/1-691 RKIGETQESV LERIGPQEAI VWDEYLTGPF GLIAQYSLLK EHEVEKMFTL ENSBTAP00000005508/1-596 ---------- --------AI VWDEYLTGPF GLIAQYSLLK EHEVEKMFTL bmy_01452T0/1-506 ---------- ---------- ---------- ---------K EHEVEKMFTL ENSTTRP00000014969/1-596 ---------- --------AI VWDEYLTGPF GLIAQYSLLK EHEVEKMFTL 101 150 BACU013638/1-691 KGSRLPAADV KNIIFVVRPR LELMDIISEN VLSEDRRGPA RDFHILFVPR ENSBTAP00000005508/1-596 KGSRLPAADV KNIIFFVRPR LELMDIIAEN VLSEDRRGPA RDFHILFVPR bmy_01452T0/1-506 KGSRLPAADV KNIIFVVRPR LELMDIISEN VL-------- ---------- ENSTTRP00000014969/1-596 KGSRLPAADV KNIIFVVRPR LELMDIIAEN VLSEDRRGPA RDFHILFVPR 151 200 BACU013638/1-691 RSLLCEQRLK DLGVLGSFIH REEYSLDLIP FDGDLLSMES EGAFKECYLE ENSBTAP00000005508/1-596 RSLLCEQRLK DLGVLGSFIH REEYSLDLIP FDGDLLSMES EGAFKECYLE bmy_01452T0/1-506 ---------- ---------- REEYSLDLIP FDGDLLSMES EGAFKECYLE ENSTTRP00000014969/1-596 RSLLCEQRLK DLGVLGSFIH REEYSLDLIP FDGDLLSMES EGAFKECYLE 201 250 BACU013638/1-691 SDQTSLYHAA KGLMTLQALY GTIPQIFGKG ECAR------ ---------- ENSBTAP00000005508/1-596 SDQTSLYHAA KGLMTLQALY GTIPQIFGKG ECAR------ ---------- bmy_01452T0/1-506 SDQTSLYHAA KGLMTLQALY GTIPQIFGKG ECARVRNGRR APADPMFYFQ ENSTTRP00000014969/1-596 SDQTSLYHAA KGLMTLQALY GTIPQIFGKG ECAR------ ---------- 251 300 BACU013638/1-691 QVANMMIRMK REFTGSQNSI FPVFDNLLLL DRNVDLLTPL ATQLTYEGLI ENSBTAP00000005508/1-596 QVANMMIRMK REFTGSQNSI FPVFDNLLLL DRNVDLLSPL ATQLTYEGLI bmy_01452T0/1-506 QVANMMIRMK REFTGSQNSI FPVFDNLLLL DRNVDLLTPL ATQLTYEGLI ENSTTRP00000014969/1-596 QVANMMIRMK REFTGSQNSI FPVFDNLLLL DRNVDLLTPL ATQLTYEGLI 301 350 BACU013638/1-691 DEIYGIQNSY VKLPPEKFAP KKQGDGGKDL PTEAKKLQLN SAEELYAEIR ENSBTAP00000005508/1-596 DEIYGIQNSY VKLPPEKFAP KKQGDGGKDL PTEAKKLQLN SAEELYAEIR bmy_01452T0/1-506 DEIYGIQNSY VKLPPEKFAP KKQGDGGKDL PTEAKKLQLN SAEELYAEIR ENSTTRP00000014969/1-596 DEIYGIQNSY VKLPPEKFAP KKQGDGGKDL PTEAKKLQLN SAEELYAEIR 351 400 BACU013638/1-691 DKNFNAVGSV LSKKAKVISA AFEERHNAKT VGEIKQFVSQ LPHMQAARGS ENSBTAP00000005508/1-596 DKNFNAVGSV LSKKAKVISA AFEERHNAKT VGEIKQFVSQ LPHMQAARGS bmy_01452T0/1-506 DKNFNAVGSV LSKKAKVISA AFEERHNAKT VGEIKQFVSQ LPHMQAARGS ENSTTRP00000014969/1-596 DKNFNAVGSV LSKKAKVISA AFEERHNAKT VGEIKQFVSQ LPHMQAARGS 401 450 BACU013638/1-691 LANHTSIAEL IKDVTTSEDF FDKLTVEQEF MSGIDTDKVN SYIEDCIAQK ENSBTAP00000005508/1-596 LANHTSIAEL IKDVTTSEDF FDKLTVEQEF MSGIDTDKVN SYIEDCIAQK bmy_01452T0/1-506 LANHTSIAEL IKDVTTSEDF FDKLTVEQEF MSGIDTDK-- ---------- ENSTTRP00000014969/1-596 LANHTSIAEL IKDVTTSEDF FDKLTVEQEF MSGIDTDKXX XXXXXXXXXX 451 500 BACU013638/1-691 HPLIKVLRLV CLQSVCNSGL KQKVLDYYKR EILQTYGYEH ILTLHNLEKT ENSBTAP00000005508/1-596 HPLIKVLRLV CLQSVCNSGL KQKVLDYYKR EILQTYGYEH ILTLHNLEKA bmy_01452T0/1-506 ---------- ---------- ---------- ----TYGYEH ILTLHNLEKT ENSTTRP00000014969/1-596 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXTYGYEH ILTLYNLEKA 501 550 BACU013638/1-691 GLLKPQTGGR NTYPTIRKTL RLWMDDVNEQ NPMDISYVYS GYAPLSVRLA ENSBTAP00000005508/1-596 GLLKPQTGGR NNYPTIRKTL RLWMDDVNEQ NPTDISYVYS GYAPLSVRLA bmy_01452T0/1-506 GLLKPQTGGR NTYPTIRKTL RLWMDDVNEQ NPTDISYVYS GYAPLSVRLA ENSTTRP00000014969/1-596 GLLKPQTGGR NTYPTVRKTL RLWMDDVNEQ NPTDISYVYS GYAPLSVRLA 551 600 BACU013638/1-691 QLLSRPGWRS IEEVLRILPG PHFEERQPLP TGLQKKRQPG ENRVTLIFFL ENSBTAP00000005508/1-596 QLLSRPGWRS IEEVLRILPG PHFEERQPLP TGLQKKRQPG ENRVTLIFFL bmy_01452T0/1-506 QLLSRPGWRS IEEVLRILPG PHFEERQPLP TGLQKKRQPG ENRVTLIFFL ENSTTRP00000014969/1-596 QLLSRPGWRS IEEVLRILPG PHFEERQPLP TGLQKKRQPG ENRVTLIFFL 601 650 BACU013638/1-691 GGVTFAEIAA LRFLSQLEDG ALLTSLECMQ AYLWTPDRRG TVELLRWTSR ENSBTAP00000005508/1-596 GGVTFAEIAA LRFLSQLEDG ---------- ---------G T--------- bmy_01452T0/1-506 GGVTFAEIAA LRFLSQLEDG ---------- ---------G T--------- ENSTTRP00000014969/1-596 GGVTFAEIAA LRFLSQLEDG ---------- ---------G T--------- 651 700 BACU013638/1-691 GNFPESSGLP RRAMPASTTI HVLQLLRELL AFVLLSYTVL IGALLLAGWT ENSBTAP00000005508/1-596 ---------- ---------- ---------- EYVIATTKLI NG----ASWL bmy_01452T0/1-506 ---------- ---------- ---------- EYVIATTKLI NG----ASWI ENSTTRP00000014969/1-596 ---------- ---------- ---------- EYVIATTKLI NG----ASWI 701 750 BACU013638/1-691 TYFMVLK- ENSBTAP00000005508/1-596 ESLMEKPF bmy_01452T0/1-506 ESLMEKPF ENSTTRP00000014969/1-596 ESLMEKPF