KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:46 2014 Check: 00 .. Name: ENSP00000419542/1-341 Len: 354 Check: 9864 Weight: 1.00 Name: ENSBTAP00000005510/1-311 Len: 354 Check: 8019 Weight: 1.00 Name: ENSTTRP00000001368/1-341 Len: 354 Check: 2947 Weight: 1.00 Name: bmy_19361T0/1-347 Len: 354 Check: 4727 Weight: 1.00 Name: BACU017230/1-209 Len: 354 Check: 6650 Weight: 1.00 // 1 50 ENSP00000419542/1-341 MLRSPTFTDA GPRC------ -----SCLPV SQTLDSMDTV L--MGSLQHC ENSBTAP00000005510/1-311 ---------- ---------- ---------- ---------- ---MGSVQHH ENSTTRP00000001368/1-341 --VPPSTCQG SGPC------ -----SCLSE PLTLDSMDTA PAPMGSLQHC bmy_19361T0/1-347 -------MRE GDPCLLQIDG CVLGTDCLSE PLTLDSMDTA PAPMGSLQHR BACU017230/1-209 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000419542/1-341 CCLLPKMGDT WAQLPWPGPP HPAMLLISLL LAAGLMHSDA GTSCPVLCTC ENSBTAP00000005510/1-311 CCPQLKMGDA WAHRPWPGPP RPALLLVPLL VAAGVIPSDG GASCPVLCTC ENSTTRP00000001368/1-341 SCQQPKMGDT WSQLPWPGPP RPAMLLVSLI LAAGVMPSDA GTSCPVLCTC bmy_19361T0/1-347 SCQQPKMGDT WSQLPWPGPP RPAVLLVSLI LAAGVMPSDA GTSCPVLCTC BACU017230/1-209 ------MGDT WSQLPWPGPP RPAVLLVSLI LAAGVMPSDA STSCPVLCTC 101 150 ENSP00000419542/1-341 RNQVVDCSSQ RLFSVPPDLP MDTRNLSLAH NRITAVPPGY LTCYMELQVL ENSBTAP00000005510/1-311 HNQAVDCSGQ RLFSVPPELP VDTRNLSLAH NRIAAVPPGY LTCYQELRVL ENSTTRP00000001368/1-341 HNQVVDCSSQ RLFSVPPDLP RDTRNLSLAH NRIAAVPSGY LTCYIELRVL bmy_19361T0/1-347 HNQVVDCSSQ RLFSVPPDLP MDAHNLSLAH NRIAAVPPGY LACYMELRVL BACU017230/1-209 HNQVVDCSSQ RLFSVPPDLP TDARNLSLAH NRIAAVPPGY LACYMELRVL 151 200 ENSP00000419542/1-341 DLHNNSLMEL PRGLFLHAKR LAHLDLSYNN FSHVPADMFQ EAHGLVHIDL ENSBTAP00000005510/1-311 SLRNNSLVEL PAGLFLHAKR LAHLDLSYNN LSHVPAGMFQ AAHSLMRIDL ENSTTRP00000001368/1-341 DLRNNSLVEL PAGLFLHAKR LAHLDLSYNN LSHVPADMFQ AAHGLVHIDL bmy_19361T0/1-347 DLRNNSLVEL PAGLFLHAKR LAHLDLSYNN LSHVPADMFQ AAHGLVHIDL BACU017230/1-209 DLRNNSLVEL PAGLFLHAKR LAHLDLSYNN LSHVPADMFQ AAHGLVHIDL 201 250 ENSP00000419542/1-341 SHNPWLRRVH PQAFQGLMQL RDLDLSYGGL AFLSLEALEG LPGLVTLQIG ENSBTAP00000005510/1-311 SHNPGLRRVH PLAFQGLAQL RDLDLSFGGL AFLSLEALEG LPGLVTLQIG ENSTTRP00000001368/1-341 SHNPGLRRVH PRAFQGLAQL RDLDLSYGGL AFLSLEALEG LPGLVTLQIG bmy_19361T0/1-347 SHNPGLRRVH PRAFQGLAQL RDLDLSYGGL AFLSLEALEG LPGLVTLQIG BACU017230/1-209 SHNPGLRRVH PRAFQGLAQL RDLDLSYGGL AFLSLEALEG LPGLVTLQIG 251 300 ENSP00000419542/1-341 GNPWVCGCTM EPLLKWLRNR IQRCTADSQL AECRGPPEVE GAPLFSLTEE ENSBTAP00000005510/1-311 GNPWVCGCTM EPLLKWLRNR IQRCTADSQL AECRGPPEVE GAPLFSLTEE ENSTTRP00000001368/1-341 GNPWVCGCTM EPLLKWLRNR IQRCTADSQL AECRGPPEVE GAPLFSLTEE bmy_19361T0/1-347 GNPWVCGCTM EPLLKWLRNR IQRCTADSQL AECRGPPEVE GAPLFSLTEE BACU017230/1-209 GNPWVCGCTM EPLLK----- ---------- ---------- ---------- 301 350 ENSP00000419542/1-341 SFKACHLTLT LDDYLFIAFV GFVVSIASVA TNFLLGITAN CCHRWSKASE ENSBTAP00000005510/1-311 SFKACHLTLT LDDYLFIAFV GFVVSIASVA TNFLLGITAN CCHRWSKASE ENSTTRP00000001368/1-341 SFKACHLTLT LDDYLFIAFV GFVVSIASVA TNFLLGITAN CCHRWSKASD bmy_19361T0/1-347 SFKACHLTLT LDDYLFIAFV GFVVSIASVA TNFLLGITAN CCHRWSKASE BACU017230/1-209 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000419542/1-341 EEEI ENSBTAP00000005510/1-311 EEEI ENSTTRP00000001368/1-341 EEEI bmy_19361T0/1-347 EEEI BACU017230/1-209 ----