KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:47 2014 Check: 00 .. Name: ENSBTAP00000005514/1-788 Len: 819 Check: 3743 Weight: 1.00 Name: ENSP00000380185/1-790 Len: 819 Check: 778 Weight: 1.00 Name: ENSTTRP00000013712/1-785 Len: 819 Check: 5553 Weight: 1.00 Name: bmy_11509T0/1-556 Len: 819 Check: 9723 Weight: 1.00 Name: BACU003086/1-794 Len: 819 Check: 9736 Weight: 1.00 // 1 50 ENSBTAP00000005514/1-788 MQALGPPDKS PLQGLVASRI ETYGGRYRAS VSSPPGNVYP QGGLLL---- ENSP00000380185/1-790 MKAFGPPHEG PLQGLVASRI ETYGGRHRAS AQSTAGRLYP RGYPVL---- ENSTTRP00000013712/1-785 MHAFGPPNGG RLQGLVASRI ETYGGRLRAS TLSTPGSLCP RGGPVL---- bmy_11509T0/1-556 MHAFGPPNED RLQGLVASRI ETYGGRLRAS SLSTPGSLYP RGGPVLGEDT BACU003086/1-794 MHAFGPPNEG SLQGLVASRI ETYGGRLRAS TLSTPGSLYP RGGPVL---- 51 100 ENSBTAP00000005514/1-788 ---------D PSRRRFMGYV PFTTGSGPAR RLSPLRLREP EPEKTHGSPF ENSP00000380185/1-790 ---------D PSRRRLQQYV PFARGSGQAR GLSPMRLRDP EPEKRHGGHV ENSTTRP00000013712/1-785 ---------D PSGRHLQGYA PFTKGSGPAR GLSPLRLREP EPEKRHGGPF bmy_11509T0/1-556 PRTPPLLLQD PSRRRLQGYV PFTKGSGPAR GLSPLRLREP DPEKRHGGPF BACU003086/1-794 ---------D PSRRRLQGYV PFTKGSGPAR GLSPLRLREP DPEKRHGGPF 101 150 ENSBTAP00000005514/1-788 GVGTPHSPKL KEVTKAHELQ VRLHTFSMFG MPRLPREDRQ HWEIGEGNDN ENSP00000380185/1-790 GAGLLHSPKL KELTKAHELE VRLHTFSMFG MPRLPPEDRR HWEIGEGGDS ENSTTRP00000013712/1-785 GAGTPHFPKL KEVTRAHQLE MSLHTFSMFG MPRLPPD--R RYEIGDDGDS bmy_11509T0/1-556 GVGTPHFPKL KEVTRAHELE VRLHTFSMFG MPRLPPEDRR RWEIGEDGDS BACU003086/1-794 GPGTPHFPKL KEVTRAHELE VRLHTFSMFG MPRLPPEDRR HWEIGEDGDS 151 200 ENSBTAP00000005514/1-788 SVAIEKSWKE LVPGHKEMSR DLCHQQEALW ELLTTELIYV RKLKIMTDLL ENSP00000380185/1-790 GLTIEKSWRE LVPGHKEMSQ ELCHQQEALW ELLTTELIYV RKLKIMTDLL ENSTTRP00000013712/1-785 SLAIENLWND LLPVNKEMSR ELCHQQEALW ELLTTELIYV RKLKIMTDLL bmy_11509T0/1-556 SLAIEKSWKE LVPGHKEMSR ELCHQQEALW ELLTTELIYV QKLKIMTDLL BACU003086/1-794 SLATEKSWKE LVPGHKEMSR ELCHQQEALW ELLTTELIYV RKLKIMTDLL 201 250 ENSBTAP00000005514/1-788 AAGLLNLQRV GLLTE----- -------VSA ETLFGNVPNL IRAHRSFWEE ENSP00000380185/1-790 AAGLLNLQRV GLLME----- -------VSA ETLFGNVPSL IRTHRSFWDE ENSTTRP00000013712/1-785 AAGLLNLQRV GLLTE----- -------VSA ETLFGNVPSL IRTHQSFWEE bmy_11509T0/1-556 AAGLLNLQRV GLLTEVTCGG MFRSFLQVSA ETLFGNVPSL IRAHRSFWEE BACU003086/1-794 AAGLLNLQRV GLLTE----- -------VSA ETLFGNVPSL IRAHRSFWEE 251 300 ENSBTAP00000005514/1-788 VLGPTLEDTR ASGQPLDPVS LQDGFLTCSQ RFQPYVLYCL RVRQTMAYAR ENSP00000380185/1-790 VLGPTLEETR ASGQPLDPIG LQSGFLTFGQ RFHPYVQYCL RVKQTMAYAR ENSTTRP00000013712/1-785 VLGPTLEETR ASGQPLDPVS LQNGFLSFSQ RFQPYVLYCL RVKQTMAYA- bmy_11509T0/1-556 VLGPTLEETR ASGQPLDPVS LQNGFVSFSQ RFQPYVLYCL RVKRTMAYAW BACU003086/1-794 VLGPTLEETR ASGQPLDPVS LQNGFLSFSQ RFQPYILYCL RVKQTMAYAW 301 350 ENSBTAP00000005514/1-788 EQQDHNPLFH IFVQWCEKHK LSGRQMLGDL LIKPHQRITK YPLLLQAVLK ENSP00000380185/1-790 EQQETNPLFH AFVQWCEKHK RSGRQMLCDL LIKPHQRITK YPLLLHAVLK ENSTTRP00000013712/1-785 -QQDNNPLFR -FLQCCEKHK RSGRQTLGDL LIKPHQRITK YPLLLQAVLK bmy_11509T0/1-556 EQQDGSPLFH TFVQWCEKHK RSGRQMLGDL LIKPHQRITK YPLLLQAVLK BACU003086/1-794 EQQDSSPLFH TFVQWCEKHK RSGRQTLGDL LIKPHQRITK YPLLLQAVLK 351 400 ENSBTAP00000005514/1-788 RTPKPQAREA LTAMIAAMES FLQHINKQVR QGEEQESLVA AARRIGPYEV ENSP00000380185/1-790 RSPEARAQEA LNAMIEAVES FLRHINGQVR QGEEQESLAA AAQRIGPYEV ENSTTRP00000013712/1-785 RSPEARAREA LTAMIAAVES FLRHINKQVR QREEQESLAA AAQRIGPYEV bmy_11509T0/1-556 RSPEARAREA LTAMIAAVES FLRHINKRVR QGEEQESLVA AAQRIGPYEV BACU003086/1-794 RSPEARAREA LTAMIAAVES FLRHINKRVR QGEEQESLVA AARRIGPYEV 401 450 ENSBTAP00000005514/1-788 LEPSSEEVEK NLRPFSTLDL MAPMLGVAPE HTRQLLFEGP ARVKEGREGK ENSP00000380185/1-790 LEPPSDEVEK NLRPFSTLDL TSPMLGVASE HTRQLLLEGP VRVKEGREGK ENSTTRP00000013712/1-785 LEPSSEEVEK NLRPFSTLDL TAPMLGVPPE HTRQLLLEGP VRMKEGREGK bmy_11509T0/1-556 LEPSSEEVEK NLRPFSTLDL TAPMLGVASE HTRQLLLEGP ARMKEGREGK BACU003086/1-794 LEPPSEEVEK NLRPFSTLDL MAPMLGVASE HTRQLLLEGP VRMKEGREGK 451 500 ENSBTAP00000005514/1-788 YSVYVCL--- CLYVCPYTQR YSVCIFVCLC VSICLCVCLS LRDPSSFLLI ENSP00000380185/1-790 LDVYLFLFSD VLLVTKPQRK ADKAKVIRPP LMLEKLVCQP LRDPNSFLLI ENSTTRP00000013712/1-785 LDVYLFLFSD VLLVTKPLRR TDKAKVIRPP LMLEKLVCRS LRDPSSFLLI bmy_11509T0/1-556 LDVYLFLFSD VLLVTKTLRR ADKAKVIRPP LMLEKLVCRP LRDPSSFLLI BACU003086/1-794 LDVYLFLFSD VLLVTKTLRR ADKAKVIRPP LMLEKLVCRP LRDPSSFLLI 501 550 ENSBTAP00000005514/1-788 HLTEFQCVSS ALTVHCPSTA NRARWLEKTQ QAQATLQKLK AEEYIQQKRE ENSP00000380185/1-790 HLTEFQCVSS ALLVHCPSPT DRAQWLEKTQ QAQAALQKLK AEEYVQQKRE ENSTTRP00000013712/1-785 HLTELQCVSS ALTVHCPSAA DRAVWLERTQ QAQVTLQKLK AEEYIQQKRE bmy_11509T0/1-556 HLTEFQCVAS ALTVHCPSAT DRALWLEKTQ QAQVC----- ---------- BACU003086/1-794 HLTEFQCVSS ALTVHCPRAT DCALWLEKTQ QAQAALQKLK AEECIQQKRE 551 600 ENSBTAP00000005514/1-788 LLALYRDRDG ESPCTRPSTP SQEGSQNSTE G---RTCESS TVIPHLVVTE ENSP00000380185/1-790 LLTLYRDQDR ESPSTRPSTP SLEGSQSSAE G---RTPEFS TIIPHLVVTE ENSTTRP00000013712/1-785 LLALYQDRDG ESPGPRPSMP SVEGSESSTE G---RTPGSS IVIPQLVVTE bmy_11509T0/1-556 ---------- EAKC------ ---GSRGMA- ---------- ---------- BACU003086/1-794 LLALYQDRDG ESPGPRPSTP SAEGSESSTE GSNCRTPESS TVIPQLVVTE 601 650 ENSBTAP00000005514/1-788 DTDDDAPSVP DDTSDSGYGT LIPGSPKESH SSLSRLRLRA LRRDPRLTFS ENSP00000380185/1-790 DTDEDAPLVP DDTSDSGYGT LIPGTPTGSR SPLSRLRQRA LRRDPRLTFS ENSTTRP00000013712/1-785 DTDEDAPLVP DDISDSGYGT LVPGSPKASH FLPNRLRSKV LRRDPRRTFS bmy_11509T0/1-556 ---------- ---------- ---GAP---- ---------- ---------- BACU003086/1-794 DTDEDAPSVP DDTSDSGYGT LVPGSPKASH FPPNRLRSRA FRRDPRLTFS 651 700 ENSBTAP00000005514/1-788 TLELRDVPLR PQPSDPQAPQ RRSAPVLPEE GVRKAGSLPR VDPPTWSEEE ENSP00000380185/1-790 TLELRDIPLR PHPPDPQAPQ RRSAPELPE- GILKGGSLPQ EDPPTWSEEE ENSTTRP00000013712/1-785 TLDLRDVPLH LQPPDPQAPQ RRSTPELPEA SVQKGDSLPR GDPPTWSEEE bmy_11509T0/1-556 --ELRS---- ---------- ---------- ---------- ---------- BACU003086/1-794 TLDLRDVPLH PLPPDPQAPQ RRSTPELPEE SVQKGGSLPR GDPPTSSEEE 701 750 ENSBTAP00000005514/1-788 DRTSTGENVV VETLQRAQLR GQLCPSPTHA DSSEESPWES SGDEEEGYLF ENSP00000380185/1-790 DGASERGNVV VETLHRARLR GQLPSSPTHA DSAGESPWES SGEEEEEGPL ENSTTRP00000013712/1-785 GGTSVGENVV VETLHRARLR WQLSPSLTHT DSSGESPWES SGDEE-EGPF bmy_11509T0/1-556 ---------- ---------- ---------- ---------- -GAQE----- BACU003086/1-794 DGTSVGENVV VENLHRARLR GQLSPSPTHT DSAGESPWDS SGDEEEEGPF 751 800 ENSBTAP00000005514/1-788 QGPDYTPSPH PLRPEDMLRE IREELASQRI EGVPEPGDSR PRKLTRVQLQ ENSP00000380185/1-790 FLKAGHTSLR PMRAEDMLRE IREELASQRI EGAEEPRDSR PRKLTRAQLQ ENSTTRP00000013712/1-785 LGPGYSPSPH PLWAEDMLRE IREELASQRI ERVPEPGDSR PRKLTRVQLQ bmy_11509T0/1-556 ---------- ---------- ---------- ---------- ---------- BACU003086/1-794 LGPGYSPSPH PLRAEDMLRE IREELASQRI ESVPEPGDSR PRKLTRVQLQ 801 850 ENSBTAP00000005514/1-788 RMRGSHVVHL DTPLSTSDV ENSP00000380185/1-790 RMRGPHIIQL DTPLSASEV ENSTTRP00000013712/1-785 RMRGLHVIRL DTPLSASEV bmy_11509T0/1-556 ---------- --------- BACU003086/1-794 RMRGLHVVHL DTPLSTSEV