KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:26:47 2014 Check: 00 .. Name: ENSTTRP00000013713/1-439 Len: 623 Check: 3865 Weight: 1.00 Name: ENSP00000162749/1-455 Len: 623 Check: 6581 Weight: 1.00 Name: ENSBTAP00000005522/1-471 Len: 623 Check: 99 Weight: 1.00 Name: bmy_11508T0/1-581 Len: 623 Check: 3318 Weight: 1.00 // 1 50 ENSTTRP00000013713/1-439 ---------- ---------- ---------- ---------- ---------- ENSP00000162749/1-455 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005522/1-471 ---------- ---------- ---------- ---------- ---------- bmy_11508T0/1-581 PTLPSPPTSS LLDFSRSSPN SGCSAGLPGL RSPGPGCDPR PSLNPPLPCP 51 100 ENSTTRP00000013713/1-439 ---------- ---------- ---------- ---------M GLPTVPGLLL ENSP00000162749/1-455 ---------- ---------- ---------- ---------M GLSTVPDLLL ENSBTAP00000005522/1-471 ---------- ---------- ---------- ---------M GLPTVPGLLL bmy_11508T0/1-581 TPGLHSGPCS SWDCVAATVA SVHHCLSPDG GVRGHSWPDM GLPTVPGLLL 101 150 ENSTTRP00000013713/1-439 PLXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000162749/1-455 PLVLLELLVG IYPSGVIGLV PHLGDREKRD SVCPQGKYIH PQNNSICCTK ENSBTAP00000005522/1-471 PLVLPALLAD VYPAGVQGLV PHPGDLEKRE SPCPQGKYNH PQNSTICCTK bmy_11508T0/1-581 PLVLRALLVD VYPAGIHGLV PHPGDREKRE SSCPQGKYSH PQNNSICCTK 151 200 ENSTTRP00000013713/1-439 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000162749/1-455 CHKGTYLYND CPGPGQDTDC RECESGSFTA SENHLRHCLS CSKCRKEMGQ ENSBTAP00000005522/1-471 CHKGTYLYND CPGPGRDTDC RVCAPGTYTA LENHLRRCLS CSRCRDEMFQ bmy_11508T0/1-581 CHKGTYLYND CPGPGLDTDC RVCARGTFTA SENHLRQCLS CSKCRKEMFQ 201 250 ENSTTRP00000013713/1-439 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXN GTVHHSC--- ENSP00000162749/1-455 VEISSCTVDR DTVCGCRKNQ YRHYWSENLF QCFNCSLCLN GTVHLSC--- ENSBTAP00000005522/1-471 VEISPCVVDR DTVCGCRKNQ YREYWGETGF RCLNCSLCPN GTVNIPC--- bmy_11508T0/1-581 VEIAPCAVDR DTVCGCRKNQ YRKYWSETLF QCLNCSLCPN GTVHHSCEHG 251 300 ENSTTRP00000013713/1-439 ---------- ---------- ---------- ---------- ------KERQ ENSP00000162749/1-455 ---------- ---------- ---------- ---------- ------QEKQ ENSBTAP00000005522/1-471 ---------- ---------- ---------- ---------- ------QERQ bmy_11508T0/1-581 PPDPPGHPVS GGRSPACCTP APPSSPSGPR GAGPSSFSCA ASLPTGKERQ 301 350 ENSTTRP00000013713/1-439 DTVCHCHVGF FLRDAECVSC AHCKNT-ECE KLCPALPVTS NNSQDPGTTV ENSP00000162749/1-455 NTVCTCHAGF FLRENECVSC SNCKKSLECT KLCLPQIENV KGTEDSGTTV ENSBTAP00000005522/1-471 DTICHCHMGF FLKGAKCISC HDCKNK-ECE KLCPTRPSTG KDSQDPGTTV bmy_11508T0/1-581 DTICHCHVGF FLRDAECVSC DHCKNT-ECE KLCPALPVTS NDSQDPGTTV 351 400 ENSTTRP00000013713/1-439 LLPLVIVFGL CLASFLLIVL ACRYQRWKPK LYSIVCGQSA PVKEGEPE-- ENSP00000162749/1-455 LLPLVIFFGL CLLSLLFIGL MYRYQRWKSK LYSIVCGKST PEKEGELEGT ENSBTAP00000005522/1-471 LLPLVIVFGL CLASFASVVL ACRYQRWKPK LYSIICGQST LVKEGEPE-- bmy_11508T0/1-581 LLPLVIIFGL CLASFLLIVL ACRYQRWKPK LYSIICGQSA PVKEGEPE-- 401 450 ENSTTRP00000013713/1-439 ---PLAPAPG FSP------- -----IPSFS PASSPTFTPC TPRGNFRVTS ENSP00000162749/1-455 TTKPLAPNPS FSPTPGFTPT LGFSPVPSST FTSSSTYTPG D-CPNF---A ENSBTAP00000005522/1-471 ---LLVPAPG FNP----TTT ICFSSTPSSS PVSIPPYISC D-RSNFGAVA bmy_11508T0/1-581 ---PLAPAPS FSP------- -----IPSFS PASSPTFTPC D-RSNFRVTS 451 500 ENSTTRP00000013713/1-439 LP-REMAPPH QGAGPILPAP PAS------- --------TP VP-------T ENSP00000162749/1-455 APRREVAPPY QGADPILATA LAS------- --------DP IP-------N ENSBTAP00000005522/1-471 SPSSETAPPH LKAGPILPGP PASTHLCTPG PPASTHLCTP GPPASTHLCT bmy_11508T0/1-581 LP-REMAPPH QGAGPILPAP PAS------- --------AP VP-------T 501 550 ENSTTRP00000013713/1-439 PVQKWEASAH G----PQR-P DADPATLYAV VDGVPPLRWK EFVRRLGLSD ENSP00000162749/1-455 PLQKWEDSAH K----PQSLD TDDPATLYAV VENVPPLRWK EFVRRLGLSD ENSBTAP00000005522/1-471 PVQKWEASAP S---APDQLA DADPATLYAV VDGVPPSRWK ELVRRLGLSE bmy_11508T0/1-581 PVQKWEASAH GAPSAPAPLA DADPATLYAV VDGVPPLRWK EFVRRLGLSD 551 600 ENSTTRP00000013713/1-439 HEIERLELQN LRCLREAQYS MLAAWRRRTP RREATLELLG RVLRDMDLLG ENSP00000162749/1-455 HEIDRLELQN GRCLREAQYS MLATWRRRTP RREATLELLG RVLRDMDLLG ENSBTAP00000005522/1-471 HEIERLELEN GRHLREAQYS MLAAWRRRTP RREATLELLG RVLRDMDLLG bmy_11508T0/1-581 HEIERLELQN LRCLREAQYS MLAAWRRRTP RREATLELLG RVLRDMDLLG 601 650 ENSTTRP00000013713/1-439 CLEDIEEALG GPAPLAPEPR LPR ENSP00000162749/1-455 CLEDIEEALC GPAALPPAPS LLR ENSBTAP00000005522/1-471 CLENIEEALG GAARLASEPR LLR bmy_11508T0/1-581 CLEDIEEALG GPAPLAPEPR LPR