KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:47 2014 Check: 00 .. Name: ENSTTRP00000016194/1-559 Len: 648 Check: 9839 Weight: 1.00 Name: BACU009908/1-178 Len: 648 Check: 2441 Weight: 1.00 Name: ENSBTAP00000005525/1-632 Len: 648 Check: 1871 Weight: 1.00 Name: bmy_10439T0/1-599 Len: 648 Check: 242 Weight: 1.00 Name: ENSP00000387246/1-619 Len: 648 Check: 2037 Weight: 1.00 // 1 50 ENSTTRP00000016194/1-559 ENHFPNFQIV KLVAMMXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU009908/1-178 ---------- ----MMDDQQ ALNSIMQDLA VLHKASRPAL SLQETRKAKS ENSBTAP00000005525/1-632 ---------- -----LDDQQ ALNSIMQDLA VLHKASRPAL SLQETRKTKS bmy_10439T0/1-599 ---------- ----MMDDQQ ALNSIMQDLA VLHKASRPAL SLQETRKAKS ENSP00000387246/1-619 ---------- -----MDDQQ ALNSIMQDLA VLHKASRPAL SLQETRKAKS 51 100 ENSTTRP00000016194/1-559 XXXXXXNDVR VKFEHRGEKR ILQFPRPVKL EDLRSKAKIA FGQSMDLHYT BACU009908/1-178 LSPKKQNDVR VKFEHRGEKR ILQFPRPVKL EDLRSKAKIA FGQSMDLHYT ENSBTAP00000005525/1-632 SSPKKQNDVR VKFEHRGEKR ILQFPRPVKL EDLRSKAKIA FGQSMDLHYT bmy_10439T0/1-599 LSPKKQNDVR VKFEHRGEKR ILQFPRPVKL EDLRSKAKIA FGQSMDLHYT ENSP00000387246/1-619 SSPKKQNDVR VKFEHRGEKR ILQFPRPVKL EDLRSKAKIA FGQSMDLHYT 101 150 ENSTTRP00000016194/1-559 NNELVIPLTT QDDLDKAVEL LDRSIHMKSL KILLVINGST QATNLEPLPS BACU009908/1-178 NNELVIPLTT QDDLDKAVEL LDRSVHMKSL KILLVINGST QATNLEPLPS ENSBTAP00000005525/1-632 NNELVIPLTT QDDLDKAVEL LDRSIHMKSL KILLVINGSA QRASS-PFFN bmy_10439T0/1-599 NNELVIPLTT QDDLDKAVEL LDRSIHMKSL KILLVINGST QATNLEPLPS ENSP00000387246/1-619 NNELVIPLTT QDDLDKAVEL LDRSIHMKSL KILLVINGST QATNLEPLPS 151 200 ENSTTRP00000016194/1-559 LED------- -----LDNTV FGAERKKR-L SIVGPTSRDR SSPPPGYIPD BACU009908/1-178 LED------- -----LDNTV FGAERKKR-L SVVGKK---- ---------- ENSBTAP00000005525/1-632 VGQHLYIILQ KNAGSLINLI MQLSAGRRTY YLTSPTSRDR SSPPPGYIPD bmy_10439T0/1-599 LED------- -----LDNTV FGAERKKR-L SVVGPTSRDR SSPPPGYIPD ENSP00000387246/1-619 LED------- -----LDNTV FGAERKKR-L SIIGPTSRDR SSPPPGYIPD 201 250 ENSTTRP00000016194/1-559 ELHQVARNGS FTSINSEGEF IPESMDQ-ML DPLSLSSPEN SGSGSCPSLD BACU009908/1-178 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005525/1-632 ELHQVARNGS FTSINSEGEF IPESMDQTML DPLSLSSPEN SGSGSCPSLD bmy_10439T0/1-599 ELHQVARNGS FTSINSEGEF IPESMDQ-TF STFR------ ---------- ENSP00000387246/1-619 ELHQVARNGS FTSINSEGEF IPESMDQ-ML DPLSLSSPEN SGSGSCPSLD 251 300 ENSTTRP00000016194/1-559 SPLDGESYPK SRMPRAQSYP DNHQEFSDYD NPIFEKFGKG GTYPRRYHVS BACU009908/1-178 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005525/1-632 SPLDGESYPK SRMPRAQSYP DNHQEFSDYD NPIFEKFGKG GTYPRRYHIS bmy_10439T0/1-599 -----ENYPK SRMPRAQSYP DNHQEFSDYD NPIFEKFGKG GTYPRRYHVS ENSP00000387246/1-619 SPLDGESYPK SRMPRAQSYP DNHQEFSDYD NPIFEKFGKG GTYPRRYHVS 301 350 ENSTTRP00000016194/1-559 YHHQDYNDXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU009908/1-178 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005525/1-632 YHHQDYNDGR KTFPRARRTQ GTSFRSPVSF SPTDHSLSTS SGSSIFTPEY bmy_10439T0/1-599 YHHQDYNDGR KTFPRARRTQ GTSFRSPVSF SPTDHSVSTS SGSSIFTPEY ENSP00000387246/1-619 YHHQEYNDGR KTFPRARRTQ GTSLRSPVSF SPTDHSLSTS SGSSIFTPEY 351 400 ENSTTRP00000016194/1-559 XXXXXXXXXX XXXXXXXXVM DISPPSRSPR APTNWRLGKL LGQGAFGRVY BACU009908/1-178 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005525/1-632 DESRIRRRGS DIDNPTLTVM DISPPSRSPR APTNWRLGKL LGQGAFGRVY bmy_10439T0/1-599 DESRVRRRGS DIDNPTLTVM DISPPSRSPR APTNWRLGKL LGQGAFGRVY ENSP00000387246/1-619 DDSRIRRRGS DIDNPTLTVM DISPPSRSPR APTNWRLGKL LGQGAFGRVY 401 450 ENSTTRP00000016194/1-559 LCYDVDTGRE LAVKQVQFDP DSPETSKEVN ALECEIQLLK NLLHERIVQY BACU009908/1-178 ---------- ---------- ---------- ---ASVEIMK ---------- ENSBTAP00000005525/1-632 LCYDVDTGRE LAVKQVQFDP DSPETSKEVN ALECEIQLLK NLLHERIVQY bmy_10439T0/1-599 LCYDVDTGRE LAVKQVQFDP DSPETSKEVN ALECEIQLLK NLLHERIVQY ENSP00000387246/1-619 LCYDVDTGRE LAVKQVQFDP DSPETSKEVN ALECEIQLLK NLLHERIVQY 451 500 ENSTTRP00000016194/1-559 YGCLRDPQEK TLSIFMEYMP GGSIKDQLKA YGALTENVTR KYTRQILEGV BACU009908/1-178 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005525/1-632 YGCLRDPQEK TLSIFMEYMP GGSIKDQLKA YGALTENVTR KYTRQILEGV bmy_10439T0/1-599 YGCLRDPQEK TLSIFMEYMP GGSIKDQLKA YGALTENVTR KYTRQILEGV ENSP00000387246/1-619 YGCLRDPQEK TLSIFMEYMP GGSIKDQLKA YGALTENVTR KYTRQILEGV 501 550 ENSTTRP00000016194/1-559 HYLHSNMIVH RDIKGANILR DSTGNVKLGD FGASKRLQTI CLSGTGMKSV BACU009908/1-178 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005525/1-632 HYLHSNMIVH RDIKGANILR DSTGNVKLGD FGASKRLQTI CLSGTGMKSV bmy_10439T0/1-599 HYLHSNMIVH RDIKGANILR DSTGNVKLGD FGASKRLQTI CLSGTGMKSV ENSP00000387246/1-619 HYLHSNMIVH RDIKGANILR DSTGNVKLGD FGASKRLQTI CLSGTGMKSV 551 600 ENSTTRP00000016194/1-559 TGTPYWMSHE VISGEGYGRK ADI------- ---------- ---------- BACU009908/1-178 ---------- ---------- ---WVIS--- ---------W FHLHPLR--- ENSBTAP00000005525/1-632 TGTPYWMSPE VISGEGYGRK ADIWSVGCTV VEMLTEKPPW AEFEAMAAIF bmy_10439T0/1-599 TGTPYWMSPE VISGEGYGRK ADIWSVGCTV VEMLTEKPPW AEFEAMAAIF ENSP00000387246/1-619 TGTPYWMSPE VISGEGYGRK ADIWSVACTV VEMLTEKPPW AEFEAMAAIF 601 650 ENSTTRP00000016194/1-559 ---------- ---------- ---------- ---------- -------- BACU009908/1-178 ---------- ---------- ---------- ---------- -------- ENSBTAP00000005525/1-632 KIATQPTNPK LPPHVSDYTR DFLKRIFVEA KLRPPADDLL RHTFVHCH bmy_10439T0/1-599 KIATQPTNPK LPPHVSDHTR DFLKRIFVEA KLRPSADELL RHMFVHYH ENSP00000387246/1-619 KIATQPTNPK LPPHVSDYTR DFLKRIFVEA KLRPSADELL RHMFVHYH