KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:48 2014 Check: 00 .. Name: ENSP00000331474/1-238 Len: 240 Check: 4813 Weight: 1.00 Name: ENSBTAP00000005527/1-238 Len: 240 Check: 4350 Weight: 1.00 Name: ENSTTRP00000012351/1-240 Len: 240 Check: 5911 Weight: 1.00 Name: bmy_10179T0/1-175 Len: 240 Check: 6381 Weight: 1.00 Name: BACU010809/1-240 Len: 240 Check: 7584 Weight: 1.00 // 1 50 ENSP00000331474/1-238 MESLSELQNP LLPRSPAHLH GPYPYPETPP SWSCQEKLYS YLLGGAGPAG ENSBTAP00000005527/1-238 MESLSELQNP LLPRSPTHLH GPYPYPEASP AWPCREKIYS YLLGGAGPAH ENSTTRP00000012351/1-240 MESLSELQNP LLPQNPAHLH GPYPYPEASP AWPCREKIYS YLLGGAGPAH bmy_10179T0/1-175 MESLSELQNP LLPRNPAHLH GPYPYPEASP AWPCREKIYS YLLGGADPAH BACU010809/1-240 MESLSELQNP LLPRNPAHLH GPYPYPEASP TWPSREKIYS YLLGGAGPAH 51 100 ENSP00000331474/1-238 AHQLLDPGSL QLAVEAWYRP SCLLGRDKVK EPRAGSCETS FTEDREPQEG ENSBTAP00000005527/1-238 AHQLLDPGSL QLAVEAWYRP SCLLGRDKVK EPRAGSCETS FTEGREPPAG ENSTTRP00000012351/1-240 AHQLLDPGSL QLAVEAWYRP NCLLGRDKLK EPRADSCETS FTESREPPAG bmy_10179T0/1-175 AHQLLDPGSL QLAVEAWYRP NCLLGRDKVK EPRAGTCETS FTESREPPAG BACU010809/1-240 AHQLLDPGSL QLAVEAWYRP NCLLGRDKVK EPRAGSCETS FTESREPPAG 101 150 ENSP00000331474/1-238 PPEQPTGPGQ AAENVTIQTV SYGVQEELRD QEDDQ--EEE ESDATSTESE ENSBTAP00000005527/1-238 PTERSTEPGQ AEEDVAIQTV SYGVQEEFQG QEGDP--EEE ESDATSTESE ENSTTRP00000012351/1-240 PTARSTEPGQ AEEDVAIQTV SYGVQEELQG QEDDQEEEEE ESDATSTESE bmy_10179T0/1-175 PTERSTEPGQ AEEDVTIQTV SY-------- ---------- ---------- BACU010809/1-240 PTERSTEPGQ AEEDVTIQTV SYGVQEELQG QEDDQEEEEE ESDATSTESE 151 200 ENSP00000331474/1-238 SEDNFLTLPP RDHLGLTLFS MLCCFWPLGI AAFYFSQGTS KAISKGDFRL ENSBTAP00000005527/1-238 SEDNFLTLPP RDHLGLTIFS MLCCFWPLGI AAFYFSQGTS KAISKGDFRL ENSTTRP00000012351/1-240 SEDNFLTLPP RDHLGLTIFS MLCCFWPLGI AAFYFSQGTS KAISKGDFRL bmy_10179T0/1-175 ---------- ---------- ---------- -------GTS KAISKGDFRL BACU010809/1-240 SEDNFLTLPP RDHLGLTIFS MLCCFWPLGI AAFYFSQGTS KAISKGDFRL 201 250 ENSP00000331474/1-238 ASTTSRRALF LATLAIAVGA GLYVAVVVAL AAYMSQNGHG ENSBTAP00000005527/1-238 ANTTSRRALF LATLSIAVGA GLYVAVVVAL AAYMSQNGHS ENSTTRP00000012351/1-240 ASTTSRRALF LATLSIAIGA GLYVAVVVAL AAYMSQNGHS bmy_10179T0/1-175 ASTTSRRALF LATLSIAIGA GLYVAVVVAL AAYMSQNGHS BACU010809/1-240 ASTTSRRALF LATLSIAIGA GLYVAVVVAL AAYMSQNGHS