KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:50 2014 Check: 00 .. Name: ENSP00000321703/1-805 Len: 850 Check: 7311 Weight: 1.00 Name: ENSBTAP00000005554/1-729 Len: 850 Check: 8405 Weight: 1.00 Name: ENSTTRP00000004291/1-810 Len: 850 Check: 6498 Weight: 1.00 Name: bmy_06087T0/1-688 Len: 850 Check: 9226 Weight: 1.00 Name: BACU007428/1-557 Len: 850 Check: 1192 Weight: 1.00 // 1 50 ENSP00000321703/1-805 ---------- ------MAFS PWQILSPVQW AKWTWSAVRG GAAGEDEAGG ENSBTAP00000005554/1-729 VPAPLLPGAG AAGAARMAFS PWQILSPVQW ARWTWSAVRG GGAGEDEAGG ENSTTRP00000004291/1-810 ---------- ------MAFS PWQILSPVQW AKWTWSAVRG GVAGEDEAGG bmy_06087T0/1-688 ---------- ---------- ---------- ---------- ---------- BACU007428/1-557 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000321703/1-805 PEGDPEEEDS QAETKSLSFS SDSEGNFETP EAETPIRSPF KESCDPSLGL ENSBTAP00000005554/1-729 PEGYPEDEDS QAETKSLSFS SDSEGNFETP ETETPIRSPL KESCESHLGL ENSTTRP00000004291/1-810 PEGDPEEEDS QAETKSLSFS SDSEGNFETP EAETPIRSPC KESCDSHLGL bmy_06087T0/1-688 ---------- ---------- ---------- ---------- ---------- BACU007428/1-557 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000321703/1-805 AGPGAKSQES QEADEQLVAE VVEKCSSKTC SKPSENEVPQ QAIDSHSVKN ENSBTAP00000005554/1-729 AGSGAKTQDS QEEEEELVAE VVGSCSSAAA SRPSGQEAAP PAGGSRPVKD ENSTTRP00000004291/1-810 AGPGAKTQDS QEVDEQLLAE VVEKWSPEAG SRLSENEAAQ HTTESYSVKG bmy_06087T0/1-688 --------DS QEVDEQLVAE VVGKWPSEAG SRPSANKAAQ PATASYSVKG BACU007428/1-557 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000321703/1-805 FREEPEHDFS KISIVRPFSI ETKDSTDISA VLGTKAAHGC VTAVSGKALP ENSBTAP00000005554/1-729 FREEPEHDAS KISVVRPFSI ESRNCGDVPV APGTAALLGP AV-------- ENSTTRP00000004291/1-810 FREDLNHDVS KISVVRPFSV ETKNSTAPPG PPGPAAAHGC VAAALGQAGP bmy_06087T0/1-688 FREEPEHDVS KISVVRPFSV ETKNSTAPRG PPGPAAAHGC AAAVLGQAGL BACU007428/1-557 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000321703/1-805 SS-PPDALQD EAMTEGSMGV TLEASAEADL KAGNSCPELV PSRRSKLRKP ENSBTAP00000005554/1-729 -----GVQDN EAMTAG---- ---AALEADP GAGSPRPEPG AG-RSRLRKP ENSTTRP00000004291/1-810 CPRAPGAAQD QAMTEGAMGS TLEASAEADP EAGSPCPEPG AS-RSRLRKP bmy_06087T0/1-688 CPGAPGAAQD QAMTEGAMGA TREASADGDA EAGSPCPEPG AS-RSRLRKP BACU007428/1-557 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000321703/1-805 KPVPLRKKAI GGEFSDTNAA VEGTPLPKAS YHFSPEELDE N--TSPLLGD ENSBTAP00000005554/1-729 RPVPLRKKAL GSELSEATPA LEDM------ RPVGEDGKAG ---------- ENSTTRP00000004291/1-810 RPVPPRKKAA GGGVSEAHPA PEGARLPRVD RQYGSDGEAG NAATPALLGG bmy_06087T0/1-688 RPVPLRKKAA GGGVPEAHPA PEGARLPRAD RQSGPDGAAG NAATPALLGG BACU007428/1-557 -----RKKAA GGGVSEAHPD PEGARLPRAD RQSGPDGAAG NTATPALLGG 301 350 ENSP00000321703/1-805 ARFQKSPPDL KETPGTLSSD TNDSGVELGE ESRSSPLKLE FDFTEDTGNI ENSBTAP00000005554/1-729 --SQKCAPEM METP---GGD AHDSGAEQPE DARSPPLQCE FDFAEDTETV ENSTTRP00000004291/1-810 DRSQKCPPDV RETPCAPGGD TRDSGAELPE AVRGSPLKLE FDFTEDVETV bmy_06087T0/1-688 DRSQKCPPEV RETACAPGGD THDSGAELPE VVRSSPLKLE FDFTEDVETV BACU007428/1-557 DRSQKCPPEV RETPCAAGGD TRDSGAELPE AVRSSPLKLE FDFTEDVETV 351 400 ENSP00000321703/1-805 EARKALPRKL GRKLGSTLTP KIQKDGISKS AGLEQPTDPV ARDGPLSQTS ENSBTAP00000005554/1-729 ESRRALPRKP GRKPGSRVMP QVH--GAK-- -------AP- ---------- ENSTTRP00000004291/1-810 ESRKALPRKP GRKPGSRVTP KVQKDGTG-- -------EPA GAPGAGASSE bmy_06087T0/1-688 ESRKALPRKP GRKPGSRVTP EVQKDGAG-- -------EPA GAPGAGASSE BACU007428/1-557 ESRKGLPRKP GRKPGSRVTP KVQKDGAG-- -------EPA GAPGAGASSE 401 450 ENSP00000321703/1-805 SKPDPSQWES PSFNPFGSHS VLQNSPPLSS EGSYHFDPDN FDESMDPFKP ENSBTAP00000005554/1-729 --PEPGPGAS PTLRPRGGPL ARQHSPPLSA QGSYRFDPDL FDESSDPFKP ENSTTRP00000004291/1-810 PGPRPCPGES PDFGPFGGHS PLQRSPLLSA QGSYRFDPDH FDESMDPFKP bmy_06087T0/1-688 PGPRPCPGEN PDFGPFGGHS PLQRSPLLSA QGSYGFDPDH FDESMDPFKP BACU007428/1-557 PGPRPCPGES PDFGPFGGHS PLQRSPLLSA QGSYRFDPDH FDESMDPFKP 451 500 ENSP00000321703/1-805 TTTLTSSDFC SPTGNHVNEI LESPKKAKSR LIT------- -----SGCKV ENSBTAP00000005554/1-729 SMTFASGDFD SPAGNQVNEI LESPKKAKSR LIT------- -----SGCKV ENSTTRP00000004291/1-810 AMTLTSSDFG SPAGSHISEI LESPKKAKSR LITTTEQVKF LCFLLSGCKV bmy_06087T0/1-688 ALTLTSSDFG SPAGSHISEI LESPKKAKSR LIT------- -----SGCKV BACU007428/1-557 ALTLTSSDFG SPAGSHISEI LESPKKAKSR LIT------- -----SGCKV 501 550 ENSP00000321703/1-805 KKHETQSLAL DACSRDEGAV ISQISDISNR DGHATDEEKL ASTSCGQKSA ENSBTAP00000005554/1-729 KKYEAQSLAL DGCSQDEGAV ISQISDISNR DGHATDEEKL ASTSSVQKPT ENSTTRP00000004291/1-810 KKYEAQSLAL DGCSQDEGAV ISQIPDISNR DGHATDEEKL ASTSSGQKPI bmy_06087T0/1-688 KKYEAQSLAL DGCSQDEGAV ISQISDISNR DGHATDEEKL ASTSSGQKPI BACU007428/1-557 KKYEAQSLAL DGCSQDEGAV ISQISDISNR DGHATDEEKL ASTSSGQKPI 551 600 ENSP00000321703/1-805 GAEVKGEPEE DLEYFECSNV PVSTINHAFS SSEAGIEKET ---CQKMEED ENSBTAP00000005554/1-729 GAEGKG---- ---------- ---------- -----SEKDP ---CQKMEKD ENSTTRP00000004291/1-810 GAEGKGEPED DLEYFECSNV PVSAINHAFS SSEAGTEKET ---CQQMEKD bmy_06087T0/1-688 GAEGKG---- ---------- ---------- -----TEKET ---CQQMEKD BACU007428/1-557 GAEGKGEPED DLEYFECSNV PVSAINHAFS SSEAEAEERT SYLCPLPQQ- 601 650 ENSP00000321703/1-805 GSTVLGLLES SAEKAPVSVS CGGESPLDGI CLSESDKTAV LTLIREE--- ENSBTAP00000005554/1-729 GSTVPALLES PVEKTPVSVA CGVESPLDGI CLSESDKTAV LTLIREE--- ENSTTRP00000004291/1-810 GPAVPALLES LGEKGPVSVA CGGESPLDGI CLSESDKTAV LTLIREE--- bmy_06087T0/1-688 GPAVPALLES LGEKGPVSVA CGGESPLDGI CLSESDKTAV LTLIREESYF BACU007428/1-557 -----ALLEP LGEKGPVSVA CGGESPLDGI CLSESDKTAV LTLIREE--- 651 700 ENSP00000321703/1-805 --------II TKEIEANEWK KKYEETRQEV LEMRKIVAEY EKTIAQMIED ENSBTAP00000005554/1-729 --------II TKEIEANEWK KKYEETRQEV LEMRKIVAEY EKTIAQMIED ENSTTRP00000004291/1-810 --------II TKEMEASEWK KKYEETRQEV LEMRKIVAEY EKTIAQMIED bmy_06087T0/1-688 IQKQAIINII TKEMEANEWK KKYEETRQEV LEMRKIVAEY EKTIAQMIED BACU007428/1-557 --------II TKEMEANEWK KKYEETRQEV LEMRKIVAEY EETIAQMIED 701 750 ENSP00000321703/1-805 EQRTSMTSQK SFQQLTMEKE QALADLNSVE RSLSDLFRRY ENLKGVLEGF ENSBTAP00000005554/1-729 EQRTSMSSQK SFQQLTMEKE QALADLNSVE RSLSDLFRRY ENLKGVLEGF ENSTTRP00000004291/1-810 EQRTSMTSQK SFQQLTMEKE QALADLNSVE RSLSDLFRRY ENLKGVLEGF bmy_06087T0/1-688 EQRTSMTSQK SFQQLTMEKE QALADLNSVE RSLSDLFRRY ENLKGVLEGF BACU007428/1-557 EQRTSMTSQK SFQQLTMEKE QALADLNSVE RSLSDLFRRY ENLKGVLEGF 751 800 ENSP00000321703/1-805 KKNEEALKKC AQDYLARVKQ EEQRYQALKI HAEEKLDKAN EEIAQVRTKA ENSBTAP00000005554/1-729 KKNEEALKKC AQDYLARVKQ EEQRYQALKI HAEEKLDKAN EEIAQVRTKA ENSTTRP00000004291/1-810 KKNEEALKKC AQDYLARVKQ EEQRYQALKV HAEEKLDKAN EEIAQVRTKA bmy_06087T0/1-688 KKNEEALKKC AQDYLARVKQ EEQRYQALKI HAEEKLDKAN EEIAQVRTKA BACU007428/1-557 KKNEEALKKC AQDYLARVKQ EEQRYQALKI HAEEKLDKAN EEIAQVRTKA 801 850 ENSP00000321703/1-805 KAESAALHAG LRKEQMKVES LERALQQKNQ EIEELTKICD ELIAKLGKTD ENSBTAP00000005554/1-729 KAESAALHAG LRKEQMKVES LERALQQKNQ EIEELTKICD ELIAKLGKTD ENSTTRP00000004291/1-810 KAESAALHAG LRKEQMKVES LERALQQKNQ EIEELTKICD ELIAKLGKTD bmy_06087T0/1-688 KAESAALHAG LRKEQMKVES LERALQQKNQ EIEELTKICD ELIAKLGKTD BACU007428/1-557 KAESAALHAG LRKEQMKVES LERALQQKNQ EIEELTKICD ELIAKLGKTD