KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:52 2014 Check: 00 .. Name: bmy_13614T0/1-566 Len: 710 Check: 1712 Weight: 1.00 Name: ENSTTRP00000002251/1-698 Len: 710 Check: 5326 Weight: 1.00 Name: ENSBTAP00000005564/1-704 Len: 710 Check: 2123 Weight: 1.00 Name: ENSP00000374036/1-694 Len: 710 Check: 2379 Weight: 1.00 Name: BACU003444/1-605 Len: 710 Check: 8969 Weight: 1.00 // 1 50 bmy_13614T0/1-566 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002251/1-698 MTDTVFSNSS SRWMCPSDRP QQS----KLQ TGWSVHPSGQ ADRGRKQEEL ENSBTAP00000005564/1-704 MTDTVFSSSS SRWMCPSDRP LQSNDKEQLQ TGWSVHPSGQ PDRQRKQEEL ENSP00000374036/1-694 MTDTVFSNSS NRWMYPSDRP LQSNDKEQLQ AGWSVHPGGQ PDRQRKQEEL BACU003444/1-605 MTDTVFSNSS SRWMCPSDRP QQS----KLQ TGWSVHPSGQ PDRQRKQEEL 51 100 bmy_13614T0/1-566 ---------- ---------- ---------- -----MRKNV AGDGVNCCIL ENSTTRP00000002251/1-698 TDEEKEIINR VIARAEKMEE LEQERIGRLV DRLENMRKNV AGDGVNCCIL ENSBTAP00000005564/1-704 TDEEKEIINR VIARAEKMEE MEQERIGRLV DRLENMRKNV AGDGVNRCIL ENSP00000374036/1-694 TDEEKEIINR VIARAEKMEE MEQERIGRLV DRLENMRKNV AGDGVNRCIL BACU003444/1-605 TDEEKEIINR VIARAEKMEE MEQERIGRLV DRLENMRKNV AGDGVNCCIL 101 150 bmy_13614T0/1-566 CGEELGMLGS ACXVCEDCKK NVCTKCGVET SNSRPHPVWL CKICIEQREV ENSTTRP00000002251/1-698 CGEQLGMLGS ACVVCEDCKK NVCTKCGVET FNSRPHPVWL CKICIEQREV ENSBTAP00000005564/1-704 CGEQLGMLGS ACVVCEDCKK NVCTKCGVET SNNRPHPVWL CKICIEQREV ENSP00000374036/1-694 CGEQLGMLGS ACVVCEDCKK NVCTKCGVET -NNRLHSVWL CKICIEQREV BACU003444/1-605 CGEELGMLGS ACVVCEDCKK NVCTKCGVET SNSRPHPVWL CKICIEQREV 151 200 bmy_13614T0/1-566 WKRSGAWFFK GFPKQVLPQP MPIKKTKPQQ PASE--PAAP EQPAPEPKHP ENSTTRP00000002251/1-698 WKRSGAWFFK GFPKQVLPQP MPIKKTKPQQ PASE--PAAP EQPTPEPKHP ENSBTAP00000005564/1-704 WKRSGAWFFK GFPKQVLPQP MPIKKNKPQQ PVSEPVPAAP EQPTPEPKHP ENSP00000374036/1-694 WKRSGAWFFK GFPKQVLPQP MPIKKTKPQQ PVSE--PAAP EQPAPEPKHP BACU003444/1-605 WKRSGAWFFK GFPKQVLPQP MPIKKTKPQQ PASE--PAAP EQPATEPKHP 201 250 bmy_13614T0/1-566 ARAPAQGDAD DRRGPGQKTG PDLASAPGRG SYGPPVRRAS EARMSSSSRD ENSTTRP00000002251/1-698 ARAPTRGDSD DRRGPGQKTG PDLASAPGQG SYGPPVRRAS EARMSSSSRD ENSBTAP00000005564/1-704 ARAPTRGDTE DRRGPGQKTG PDMTSAPGRG SYGPPVRRAS EARMSSSGRD ENSP00000374036/1-694 ARAPARGDSE DRRGPGQKTG PDPASAPGRG NYGPPVRRAS EARMSSSSRD BACU003444/1-605 ARAPAQGGAD DRRGPGQKTG PDLASAPGRG SYGPPVRRAS EARMSSSSRD 251 300 bmy_13614T0/1-566 SESWDQSHGG AAGDPSRSPA GLRRANSVQA SRPTPASVQS PAPPQPGQPG ENSTTRP00000002251/1-698 SESWDQSHGG AAGDPSRGSA GLRRANSVQA SRPTPALIQS PAPPQPGQPX ENSBTAP00000005564/1-704 SDSWDQGHGM AAGDPSQSPA GLRRANSVQA SRPAPASMQS PAPPQPGQPG ENSP00000374036/1-694 SESWD--HSG GAGDSSRSPA GLRRANSVQA SRPAPGSVQS PAPPQPGQPG BACU003444/1-605 SESWDQSHGG AAGDPSRSPA ---------- ---------- ---------- 301 350 bmy_13614T0/1-566 TCHRPTRPGC HSARWLRVTP PIQGPPP--- ---HRERRER -GELGAIRQL ENSTTRP00000002251/1-698 XXXXXXXXXX XXXXXXXXXX XVALSDPTCT GATAPPREER VGGVGGYSAV ENSBTAP00000005564/1-704 PPGGSRPSPG PTGRFPDQRP EVAPSDPDYT GAAAQPREER TGGIGGYSAA ENSP00000374036/1-694 TPGGSRPGPG PAGRFPDQKP EVAPSDP--- GTTAPPREER TGGVGGYPAV BACU003444/1-605 ---------- ---------- ---------- ---------- ---------- 351 400 bmy_13614T0/1-566 ---------E PGRTERAAHW APVPKRLLLL PSRPRPRP-- -ASPHAHRRR ENSTTRP00000002251/1-698 GAREDRAGHP P--YSQASAA APQP---AVV PAHQPPRP-A EEEEEEEANS ENSBTAP00000005564/1-704 GTREDRAGHP PGSYTQASAA APQP---VVA SARQPPPP-- -EEDEEEANS ENSP00000374036/1-694 GAREDRMSHP SGPYSQASAA APQP-----A AARQPPPP-- -EEEEEEANS BACU003444/1-605 ---------- ------ASAA APQP---AAA PARQPPRPQE EEEEEEEANS 401 450 bmy_13614T0/1-566 RRRRKPTAM- ---------- --------IQ MKQGLKPMDS NGLADPYVKL ENSTTRP00000002251/1-698 YDSDEATTLG ALEFSLLYDQ DNSSLHCTII KAKGLKPMDS NGLADPYVKL ENSBTAP00000005564/1-704 YDSDEATTLG ALEFSLLYDQ DNSSLHCTII KAKGLKPMDS NGLADPYVKL ENSP00000374036/1-694 YDSDEATTLG ALEFSLLYDQ DNSSLQCTII KAKGLKPMDS NGLADPYVKL BACU003444/1-605 YDSDEATTLG ALEFSLLYDQ DNSSLHCTII KAKGLKPMDS NGLADPYVKL 451 500 bmy_13614T0/1-566 HLLPGASKSN KLRTKTLRNT RNPIWNETLV YHGITDEDMQ RKTL------ ENSTTRP00000002251/1-698 HLLPGASKSN KLRTKTLRNT RNPIWNETLV YHGITDEDMQ RKTLRISVCD ENSBTAP00000005564/1-704 HLLPGASKSN KLRTKTLRNT RNPIWNETLV YHGITDEDMQ RKTLRISVCD ENSP00000374036/1-694 HLLPGASKSN KLRTKTLRNT RNPIWNETLV YHGITDEDMQ RKTLRISVCD BACU003444/1-605 HLLPGASKSN KLRTKTLRNT RNPIWNETLV YHGITDEDMQ RKTLRISVCD 501 550 bmy_13614T0/1-566 ---------- ---RFSLKKL KPNQRKNFNI CLERVIPMKR AGTTGSARGM ENSTTRP00000002251/1-698 EDKFGHNEFI GETRFSLKKL KPNQRKNFNI CLERVIPMKR AGTTGSARGM ENSBTAP00000005564/1-704 EDKFGHNEFI GETRFSLKKL KPNQRKNFNI CLERVIPMKR AGTTGSARGM ENSP00000374036/1-694 EDKFGHNEFI GETRFSLKKL KPNQRKNFNI CLERVIPMKR AGTTGSARGM BACU003444/1-605 EDKFGHNEFI GETRFSLKKL KPNQRKNFNI CLERVIPMKR AGTTGSARGM 551 600 bmy_13614T0/1-566 ALYEEEQVER IGDTEERGKI LVSLMYSTQQ GGLIVGIIRC VHLAAMDANG ENSTTRP00000002251/1-698 ALYEEEQVER IGDTEERGKI LVSLMYSTQQ GGLIVGIIRC VHLAAMDANG ENSBTAP00000005564/1-704 ALYEEEQVER IGDIEERGKI LVSLMYSTQQ GGLIVGIIRC VHLAAMDANG ENSP00000374036/1-694 ALYEEEQVER VGDIEERGKI LVSLMYSTQQ GGLIVGIIRC VHLAAMDANG BACU003444/1-605 ALYEEEQVER IGDTEERGKI LVSLMYSTQQ GGLIVGIIRC VHLAAMDANG 601 650 bmy_13614T0/1-566 YSDPFVKLWL KPDMGKKAKH KTQIKKKTLN PEFNEEFFYD IKHSDLAKKS ENSTTRP00000002251/1-698 YSDPFVKLWL KPDMGKKAKH KTQIKKKTLN PEFNEEFFYD IKHSDLAKKS ENSBTAP00000005564/1-704 YSDPFVKLWL KPDMGKKAKH KTQIKKKTLN PEFNEEFFYD IKHSDLAKKS ENSP00000374036/1-694 YSDPFVKLWL KPDMGKKAKH KTQIKKKTLN PEFNEEFFYD IKHSDLAKKS BACU003444/1-605 YSDPFVKLWL KPDMGKKAKH KTQIKKKTLN PEFNEEFFYD IKHSDLAKKS 651 700 bmy_13614T0/1-566 LDISVWDYDI GKSNDYIGGC QLGISAKGER LKHWYECLKN KDKRIERWHQ ENSTTRP00000002251/1-698 LDISVWDYDI GKSNDYIXXX XXXXXXXXXX LKHWYECLKN KDKKIERWHQ ENSBTAP00000005564/1-704 LDISVWDYDI GKSNDYIGGC QLGISAKGER LKHWYECLKN KDKKIERWHQ ENSP00000374036/1-694 LDISVWDYDI GKSNDYIGGC QLGISAKGER LKHWYECLKN KDKKIERWHQ BACU003444/1-605 LDISVWDYDI GKSNDYIGGC QLGISAKGER LKHWYECLKN KDKKIERWHQ 701 750 bmy_13614T0/1-566 LQNENHVSSD ENSTTRP00000002251/1-698 LQNENHVSSD ENSBTAP00000005564/1-704 LQNENHVSSD ENSP00000374036/1-694 LQNENHVSSD BACU003444/1-605 LQNENHVSSD