KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:55 2014 Check: 00 .. Name: ENSP00000269142/1-862 Len: 866 Check: 558 Weight: 1.00 Name: ENSTTRP00000013833/1-861 Len: 866 Check: 1789 Weight: 1.00 Name: ENSBTAP00000005578/1-806 Len: 866 Check: 3611 Weight: 1.00 Name: bmy_19367T0/1-519 Len: 866 Check: 9470 Weight: 1.00 Name: BACU017849/1-838 Len: 866 Check: 4125 Weight: 1.00 // 1 50 ENSP00000269142/1-862 MPAGLTEPAG AAPPAAVSAS GTVTMAPAGA LPVRVESTPV ALGAVTKAPV ENSTTRP00000013833/1-861 MPAGLTEPAG AAPPAGVGAS GTVTMAPAAA LPVRVESTPV ALGAVTKAPV ENSBTAP00000005578/1-806 MPAGLTEPAG AAPPAGVGAS GTVTMAPAAA LPVRVESTPV ALGAVTKAPV bmy_19367T0/1-519 MPAGLTEPAG AAPPAGVGAS GTVTMAPAAA LPVRVESTPV ALGAVTKAPV BACU017849/1-838 ---------- ---------- ----MAPAAA LPVRVESTPV ALGAVTKAPV 51 100 ENSP00000269142/1-862 SVCVEPTASQ PLRSPVGTLV TKVAPVSAPP KVSSGPRLPA PQIVAVKAPN ENSTTRP00000013833/1-861 SVCVESTAPQ PLRSPVGTLV TKVAPVSALP KLSSGPRLPA PQIVAVKAPN ENSBTAP00000005578/1-806 SVCVESSASQ PLRSPVGTLV TKVAPVSALP KLSNGPRLPS PQIVAVKAPN bmy_19367T0/1-519 SVCVESTASQ PLRSPVGTLV TKVAPVSALP KLSSGPRLPA PQIVAVKAPN BACU017849/1-838 SVCVESTASQ PLRSPVGTLV TKVAPVSALP KLSSGPRLPA PQIVAVKAPN 101 150 ENSP00000269142/1-862 TTTIQFPANL QLPPGTVLIK SNSGPLMLVS PQQTVTRAET TSNITSRPAV ENSTTRP00000013833/1-861 TTTIQLPANF QLPPGTVLIK SNSGQLMLVS PQQAVTRTET TSNITSRPAV ENSBTAP00000005578/1-806 TTTIQLPANL QLPPGTVLIK SNSGQLMLVS PQQAVTRTET TSNITSRPAV bmy_19367T0/1-519 TTTIQLPANL QLPP----VP INFKLLMLMT ---------- ---LYYLPLP BACU017849/1-838 TTTIQLPANL QLPPGTVLIK SNSGQLMLVS PQQAVTRTET TSNITSRPAV 151 200 ENSP00000269142/1-862 PANPQTVKIC TVPNSSSQLI KKVAVTPVKK LAQIGTTVVT TVPKPSSVQS ENSTTRP00000013833/1-861 PTNTQTVKIC TMQNSSSQLI KKVAVAPVKQ LAQIGTTVVT TVPQPSPVQS ENSBTAP00000005578/1-806 PANTQTVKIC TMPNSSSQLI KKVAVAPVKQ LAQVGTTVVT SVPKPSPVQS bmy_19367T0/1-519 P--------- --KNSGSQLI KKVAVAPVKQ LAQIGTTVVT TVPKPSPVQS BACU017849/1-838 PTNTQTVKIC TMQNSSSQLI KKVAVAPVKQ LAQVGTTVVT TVPKPSPVQS 201 250 ENSP00000269142/1-862 VAVPTSVVTV TPGKPLNTVT TLKPSSLGAS STPSNEPNLK AENSAAVQIN ENSTTRP00000013833/1-861 VAVPTSVVTV TPAKPLNTVA TLKPSSLGAP PTPSSEPSLT AENSATAQTS ENSBTAP00000005578/1-806 VAVPTNVVTV TPVKPVNTVT TLKPSSLGTA SAPSNELNLK TENSASAQAN bmy_19367T0/1-519 VAVPTSVVTV TPAKPLNTVA TLKPSSLGAP PTPSSEPSLT AENSATAQTN BACU017849/1-838 VAVPTSVVTV TPAKPLNTVA TLKPSSLGAP PTPSSEPSLT AENSATAQTN 251 300 ENSP00000269142/1-862 LSPTMLENVK KCKNFLAMLI KLACSGSQSP EMGQNVKKLV EQLLDAKIEA ENSTTRP00000013833/1-861 LSPTMLXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXDAKIEA ENSBTAP00000005578/1-806 LSPTMLENVK KCKNFLAMLI KLACSGSQSP EMGQNVKKLV EQLLDAKIEA bmy_19367T0/1-519 LSPTMLENVK KCKNFLAMLI KLACSGSQSP EMGQNVKKLV EQLLDAKIEA BACU017849/1-838 LSPTMLENVK KCKNFLAMLI KLACSGSQSP EMGQNVKKLV EQLLDAKIEA 301 350 ENSP00000269142/1-862 EEFTRKLYVE LKSSPQPHLV PFLKKSVVAL RQLLPNSQSF IQQCVQQTSS ENSTTRP00000013833/1-861 EEFTRQLYVE LKSSPQPHLV PFLKKSVIAL RQLMPNSQSF IQQCVQQTSS ENSBTAP00000005578/1-806 EEFTRQLYVE LKSSPQPHLV PFLKKSVIAL RQLMPNAQSF IQQCVQQTSS bmy_19367T0/1-519 EEFTRQLYVE LKSSPQPHLV PFLKKSVIAL RQLMPNSQSF IQQCVQQTSS BACU017849/1-838 EEFTRQLYVE LKSSPQPHLV PFLKKSVIAL RQLMPNSQSF IQQCVQQTSS 351 400 ENSP00000269142/1-862 DMVIATCTTT VTTSPVVTTT VSSSQSEKS- IIVSGATAPR TVSVQTLNPL ENSTTRP00000013833/1-861 EVVIATCTTT VTPSPVVTTV VSSVQPEKP- IIGSEAATSG TVSVQTLNPL ENSBTAP00000005578/1-806 EVVTTTCPTT STPSPVVTTA ASSIQAEKPA VVGSEAGVPG VVSVQTLKPL bmy_19367T0/1-519 EVFIATCTTA VMPSPVVTTA VSSIQPEKP- IIGSEAATSG TVSVQTLNPL BACU017849/1-838 EVFIATCTTA VMPSPVVTTA VSSIQPEKP- IIGSEAATSG TVSVQTLNPL 401 450 ENSP00000269142/1-862 AGPVGAKAGV VTLHSVGPTA ATGGTTAGTG LLQTSKPLVT SVANTVTTVS ENSTTRP00000013833/1-861 A-PGGAKTGV VTLHSVGPAA VPGGTTAGTV VLQTPKPLVT SLQNTVTAVS ENSBTAP00000005578/1-806 AGPEGAKTGV VTLHSVGPAA VPGGTTAGTV VLQTPKPLVT SLQNTVTAVS bmy_19367T0/1-519 A-PGGAKTGV VTLHSVGPAA VPGGTTAGTV VLQTPKPLVT SLQNTVTAVS BACU017849/1-838 A-PGGAKTGV VTLHSVGPAA VPGGTTAGTV VLQTPKPLVT SLQNTVTAVS 451 500 ENSP00000269142/1-862 LQPEKPVVSG TAVTLSLPAV TFGETSGAAI CLPSVKPVVS SAGTTSDKPV ENSTTRP00000013833/1-861 LQPEKPVVSG TAVTLALPSV TFGETSAAAV CLPSVKPVVT SAGTTSDKPV ENSBTAP00000005578/1-806 LQPEKPVVSG TAVTLALPSV PFGKTSAAAV CIPSVKPILT SSGTTSNKPV bmy_19367T0/1-519 LQPEKPVVSG TAVTLALPS- ---------- ---------- ---------- BACU017849/1-838 LQPEKPVVSG TAVTLALPSV TFGETSAAAV CLPSVKPVVT SAGTASDKPV 501 550 ENSP00000269142/1-862 IGTPVQIKLA QPGPVLSQPA GIPQAVQVKQ LVVQQPSGGN EKQVTTISHS ENSTTRP00000013833/1-861 IGTPVQIKLA QPGPVLTQPA SIPQAVKVKQ LVVQQPSGGL AKQVTTLSHS ENSBTAP00000005578/1-806 LGPPLQIKLA QPGPVLAQPA GIPQAVKVKQ LVVQQPSGGL AKQVTTLTHS bmy_19367T0/1-519 ---------- ---------- ---------- -VVQQPSGGL AKQVTTLSHS BACU017849/1-838 IGTPVQIKLA QSGPVLTQPA SIPQAVKVKQ LVVQQPSGGL AKQVTTLSHS 551 600 ENSP00000269142/1-862 STLTIQKCGQ KTMPVNTIIP TSQFPPASIL KQITLPGNKI LSLQASPTQK ENSTTRP00000013833/1-861 SALTIQKSGQ K-VTVGTAVP TSQFPQASIL KQITLPGNKV LSLQSS-IQK ENSBTAP00000005578/1-806 PALTIQKPGQ KKVTVSTAIP TSQFSQASIL KQVTLPGNKI LSLQSS-VQK bmy_19367T0/1-519 SALTIQKSGQ KKVTVSTAVP TSQFPQASIL KQITLPGNKV LSLQSS-IQK BACU017849/1-838 SALTIQKSGQ KKVTVSTAVP TSQFPQASIL KQITLPGNKV LSLQSS-IQK 601 650 ENSP00000269142/1-862 NRIKENVTSC F-RDEDDIND VTSMAGVNLN EENACILATN SELVGTLIQS ENSTTRP00000013833/1-861 SKIKENGTAS F-RDEDDIND VTSMAGVNLS EENACILATN SELVGTLVQS ENSBTAP00000005578/1-806 NKIKENGTIS FSRDEDDIND VTSMAGVNLS EENACILATN SELVGTLIQS bmy_19367T0/1-519 NKIKENGTTS F-R------- ---------- ---------- ---------- BACU017849/1-838 NKIKENGTTS F-RDEDDIND VTSMAGVNLS EENACILATN SELVGTLVQS 651 700 ENSP00000269142/1-862 CKDEPFLFIG ALQKRILDIG KKHDITELNS DAVNLISQAT QERLRGLLEK ENSTTRP00000013833/1-861 CKDEPFLFIG PLQKRILDIG KKHDITELNS DAVNLIXXXX XXXXXXXXXX ENSBTAP00000005578/1-806 CKDEPFLFIG ALQKRILDIG KKHDITELNS DAVNLISHAT QERLRGLLEK bmy_19367T0/1-519 ---------- ---------- ---------- ---------- ---------- BACU017849/1-838 CKDEPFLFIG ALQKRILDIG KKHDITELNS DAVNLISHAT QERLRGLLEK 701 750 ENSP00000269142/1-862 LTAIAQHRMT TYKASENYIL CSDTRSQLKF LEKLDQLEKQ RKDLEEREML ENSTTRP00000013833/1-861 XXXXXXXXXX XXXASENYIL SNDTRSQLKF LEKLDQLEKH RKDVEEREML ENSBTAP00000005578/1-806 LTTIAQHRMT TYKASENYIL SNDTRSQLKF LEKLDQLEKQ RKDLEEREML bmy_19367T0/1-519 ---------- ---------- ---------- ---------- ---------- BACU017849/1-838 LTTIAQHRMT TYKASENYIL SNDTRSQLKF LEKLDQLEKQ RKDVEEREML 751 800 ENSP00000269142/1-862 LKAAKSRSNK EDPEQLRLKQ KAKELQQLEL AQIQHRDANL TALAAIGPRK ENSTTRP00000013833/1-861 LKAAKSRSNK EDPEQLRLKQ KAKELQQLEL AQIQHRDANL TALAAIGPRK ENSBTAP00000005578/1-806 LKAAKSRSNK EDPEQLRLKQ KAKELQQLEL AQIQQRDANL TALAAIGPRK bmy_19367T0/1-519 ---------- ---------- ---------- ---------- ---------- BACU017849/1-838 LKAAKSRSNK EDPEQLRLKQ KAKELQQLEL AQIQHRDANL TALAAIGPRK 801 850 ENSP00000269142/1-862 KRPLESG--I EGLKDNLLAS GTSSLTATKQ LHRPRITRIC LRDLIFCMEQ ENSTTRP00000013833/1-861 KRPLESGSGS EGLKDNLFAS GTSSLTATKQ LLRPRITRIC LRDLIFCMEQ ENSBTAP00000005578/1-806 KRPLESG--- ---------- ---------- ---------- ---------- bmy_19367T0/1-519 ---------- ---------- ---------- ---------- ---------- BACU017849/1-838 KRPLESGSGS EGLKDNLFAS GTSSLTATKQ LLRPRITRIC LRDLIFCMEQ 851 900 ENSP00000269142/1-862 EREMKYSRAL YLALLK ENSTTRP00000013833/1-861 EREMKYSRAL YLALLK ENSBTAP00000005578/1-806 ---------- ------ bmy_19367T0/1-519 ---------- ------ BACU017849/1-838 EREMKYSRAL YLALLK