KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:26:56 2014 Check: 00 .. Name: ENSP00000277570/1-435 Len: 506 Check: 3194 Weight: 1.00 Name: ENSBTAP00000005586/1-454 Len: 506 Check: 1922 Weight: 1.00 Name: bmy_16934T0/1-488 Len: 506 Check: 3886 Weight: 1.00 Name: ENSTTRP00000001993/1-439 Len: 506 Check: 6323 Weight: 1.00 // 1 50 ENSP00000277570/1-435 MPVTHRKSDA SDMNSDT--- ---------- --SPSCRLRA FSRGGSLESR ENSBTAP00000005586/1-454 MPVHHRKSDS WEMDPDS--- ---------- --SPGCRLGD LSRGSSLESQ bmy_16934T0/1-488 -----MGLDR WAFE-DLSDH GRMVRDTQAE VRQRGCLGGA LSPGGKLEGA ENSTTRP00000001993/1-439 MPVHHQKSDS WEMDPDL--- ---------- --LPGCRLSG LSRGGSLESR 51 100 ENSP00000277570/1-435 SSSSR----- ---------- ---------- SRSFTLDDES LKYLTHEEKD ENSBTAP00000005586/1-454 ASSSR----- ---------- ---------- SRSLTLDDES LKYLTHEEKD bmy_16934T0/1-488 VNSTPGSVLI PTLLWGFFPS VKPLLLLFLM SKPFVQDDES LKYLTHEEKD ENSTTRP00000001993/1-439 ASSSR----- ---------- ---------- SRSLTRDDES LKYLTHEEKD 101 150 ENSP00000277570/1-435 VLLFFEETID SLDEDFEEPV LCDGGVCCLC SPSLEESTSS PSEPEDVIDL ENSBTAP00000005586/1-454 VLLFFEETID SLEDDFEEKV LCAGDAQWHS PRSLEESTSA PSEPEDVVDL bmy_16934T0/1-488 VLLFFEETID SLEDDFEEQV LCDGDAQGHS PRSLEESASG PSEPEDVVDL ENSTTRP00000001993/1-439 VLLFFEETID SLEDDFEEQV LCDGDAQCHS PRSLEESTSG PSEPEDVVDL 151 200 ENSP00000277570/1-435 VQPAPGAGEA EGLPEGTQAA GPAPAGKEH- -----RKQDA ETPPPPDPPA ENSBTAP00000005586/1-454 VQPGPGAGEP ESLRVVKETA GAVPFGKEDP TDLERKKEDA EKSPASDPPG bmy_16934T0/1-488 VQLGPGAGEP ESLRDVTEAA GAGTVGKEDT PVL--RKEDA EKSPPPDLSG ENSTTRP00000001993/1-439 VQLGPGAGEP ESLQDVTEAA GAGAVGKEDT AVL--RKEDA EKSPPPDPPG 201 250 ENSP00000277570/1-435 PETLLAPPPL P---STPDPP RRELRAPSPP VEHPRLLRSV PTPLVMAQKI ENSBTAP00000005586/1-454 PEALPSSPPA S-PAAAPAHP RRE--PPTPP AEHPKLPRSV PTPLVIAQKI bmy_16934T0/1-488 PEALPLPPPC PVPAAAPAHP GRE--PPPPP AEHPKLARSV PTPLVIAQKM ENSTTRP00000001993/1-439 PEALPLPPPS P---SSPGPP GRE--PPPTP AEHPKLARSV PTPLVLAQKM 251 300 ENSP00000277570/1-435 SERMAGNEAL SPTSPFREGR PGEWRTPAAR GPRSGDPGPG PSHPAQ--PK ENSBTAP00000005586/1-454 SEKLAGNEGL SPTSPSKEGR PAEWRTLASL APRHGDHSPW HRHAAQPAPK bmy_16934T0/1-488 SEKLAGNEGL SPTSPSKEGR PAGWRTLTSV APRHGDHSLW HRHAAQPVPK ENSTTRP00000001993/1-439 SEKLAGNEGL SPTSPSKEGR PAGWRTLTSV APRHGDHSLW HRHAAQPAPK 301 350 ENSP00000277570/1-435 APRFPSNIIV TNGAAREPRR TLSRAAVSVQ ERRAQVLATI HGHAGAFPAA ENSBTAP00000005586/1-454 IHRFPSNISV TNSAGKDFNK TISKAAVNVQ ERKAQVLANI NGV--SFLSV bmy_16934T0/1-488 IHRFPSNISV TNSAGKAFNK TISKAAVNVQ ERKAQVLANI NGV--SFLSV ENSTTRP00000001993/1-439 IHRFPSNISV TNSAGKDFSK TISKAAVNVQ ERKAQVLANI NGV--SFLSV 351 400 ENSP00000277570/1-435 GDAGEGAPGG GSSPER--VA RGRGLPGPAE S---LRA--- GGQAPRGP-- ENSBTAP00000005586/1-454 GETEDRAQRG EPTEQR-SVS PEQSQPGPAQ EAVPTREGAR GAQQSRGVQT bmy_16934T0/1-488 GETEDRAQRS EPAEQRRSVA PEQSQPGPAR EAVPARAGAH GGQQSRGVQT ENSTTRP00000001993/1-439 GETEDRAQRS EPTEQR---K HEQSQPAPAG R---LRAGAH GGQVQRRA-- 401 450 ENSP00000277570/1-435 ----ALANGF PSAHEALKSA PSSFAPAGKS LCFRPGPALP STRARQSFPG ENSBTAP00000005586/1-454 EQPLPLANGF QSIHDVLKSQ AGPFVSTGKT VTFRPDPALP SRLA------ bmy_16934T0/1-488 EQPLPMANGF QSLHDILKSH PGPFVSTGKT VTFRPDPALP SKLA------ ENSTTRP00000001993/1-439 ----AMANGF QSLHDILKSH PGPFVSTGKT VTFRPDPALP SKLA------ 451 500 ENSP00000277570/1-435 PRQPNGAQDW R-RADSLP-- ---RPQGITV QFAGRGSSEE ARREALRKLG ENSBTAP00000005586/1-454 PQQPDCGQAA RKRSGSLPRT VGFRPQGITV QFSGRGSTEE ARREALRKLG bmy_16934T0/1-488 PRQPDCGQDA RKRSGSLPRA VGFRPQGITV QFSGRGSTEE ARREALRKLG ENSTTRP00000001993/1-439 PRQPDCGQDA RKRSGSLPRA VGFRPQGITV QFSGRGSTEE ARREALRKLG 501 550 ENSP00000277570/1-435 LLRESS ENSBTAP00000005586/1-454 LLKENL bmy_16934T0/1-488 LLKENL ENSTTRP00000001993/1-439 LLKENL