KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:57 2014 Check: 00 .. Name: ENSP00000308122/1-840 Len: 1161 Check: 7362 Weight: 1.00 Name: ENSBTAP00000005588/1-834 Len: 1161 Check: 275 Weight: 1.00 Name: BACU006755/1-937 Len: 1161 Check: 1484 Weight: 1.00 Name: bmy_21955T0/1-806 Len: 1161 Check: 8345 Weight: 1.00 Name: ENSTTRP00000011748/1-770 Len: 1161 Check: 3778 Weight: 1.00 // 1 50 ENSP00000308122/1-840 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005588/1-834 ---------- ---------- ---------- ---------- ---------- BACU006755/1-937 ---------- ---------- ---------- ---------- ---------- bmy_21955T0/1-806 MAEGTGGAGR GRGFEQDRPA GQVCPRPGQV GVGTTEPPPG LCGRPGRRSR ENSTTRP00000011748/1-770 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000308122/1-840 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005588/1-834 ---------- ---------- ---------- ---------- ---------- BACU006755/1-937 ---------- ---------- ---------- ---------- ---------- bmy_21955T0/1-806 RRGSAVAAGR SPAESPAGLV PSGPPLASPT HPARPLRPAL PARGPAKEAA ENSTTRP00000011748/1-770 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000308122/1-840 ---------- --------MV SVFRSEEMCL SQLFLQVEAA YCCVAELGEL ENSBTAP00000005588/1-834 ---------- --------MA SIFRSEEMCL SQLFLQVEAA YCCVAELGEL BACU006755/1-937 ---------- --------MA SVFRSEEMCL SQLFLQVEAA YCCVAELGEL bmy_21955T0/1-806 GDPRPGPART RLDQGWVKMA SVFRSEEMCL SQLFLQVEAA YCCVAELGEL ENSTTRP00000011748/1-770 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000308122/1-840 GLVQFKDLNM NVNSFQRKFV NEVRRCESLE RILRFLEDEM QNEIVVQLLE ENSBTAP00000005588/1-834 GLVQFKDLNV KESRFQRKFV NEVRRCESLE RILRFLEDQM QDEIEIQVPE BACU006755/1-937 GLVQFKDLNV NESRFQRKFV NEVRRCESLE RILRFLEDQM QNEIEIQVPE bmy_21955T0/1-806 GLVQFKDLNV NESRFQRKFV NEVRRCESLE RILRFLEDQM QNEIEIQVPE ENSTTRP00000011748/1-770 -------LNV NESRFQRKFV NEVRRCESLE RILRFLEDQM QNEIEIQVPE 201 250 ENSP00000308122/1-840 KSPLTPLPRE MITLETVLEK LEGELQEANQ NQQALKQSFL ELTELKYLLK ENSBTAP00000005588/1-834 KSPLTPLPRE MIILETALEK LEGELQEANQ NYQALKKNFL ELTEFKHLLK BACU006755/1-937 KSPSTPLPRE MITLETALEK LEGELQEANQ NYQALKKSFL ELTEFKHLLK bmy_21955T0/1-806 KSPSTPLPRE MITLETALEK LEGELQEANQ NYQALKKSFL ELTEFKHLLK ENSTTRP00000011748/1-770 KSPSTPLPRE MITLETALEK LEGELQEANE NYQALKKSFL ELTEFKHLLK 251 300 ENSP00000308122/1-840 KTQDFFET-E TNLADDFFTE DTSGLLELKA VPAYMTGKLG FIAGVINRER ENSBTAP00000005588/1-834 KTQDFFET-E ANLADDFFVE DTSGLLELRP TPAYISGKLG FTAGVVNRER BACU006755/1-937 KTQDFFEV-- --VIWGLFIQ ---GPFPPEP QISILTTGW- FTAGVVNRER bmy_21955T0/1-806 KTQDFFEVTE TNLADDFFME DTSGLLE--- ---------- FTAGVVNRER ENSTTRP00000011748/1-770 KTQDFFET-E TNLADDFFME DTSGLLELRP TPAYMSGKLG FTAGVVNRER 301 350 ENSP00000308122/1-840 MASFERLLWR ICRGNVYLKF SEMDAPLEDP VTKEEIQKNI FIIFYQGEQL ENSBTAP00000005588/1-834 MASFERLLWR ICRGNIYVKF SEMDTVLEDP VTREEIKKNI FIIFYQGEQL BACU006755/1-937 MASFERLLWR ICRGNIYLKF SEMDTVLEDP V--------- ---------- bmy_21955T0/1-806 MASFERLLWR ICRGNIYLKF SEMDTVLEDP ITREEIKKNI FIIFYQGEQL ENSTTRP00000011748/1-770 MASFERLLWR ICRGNIYLKF SEMDTVLEDP VTREEIKKNI FIIFYQGEQL 351 400 ENSP00000308122/1-840 RQKIKKICDG FRATVYPCPE PAVERREMLE SVNVRLEDLI TVITQTESHR ENSBTAP00000005588/1-834 REKIKKVCDG YRATVYPCPE LALERREMLQ GVNMRLEDLL TVLTQTESHR BACU006755/1-937 ---------- ---------- ---------- ---------- TVITQTESHR bmy_21955T0/1-806 RQKIKKICDG FRATTYPCPE PASERREMLD GVNMRLEDLI TVITQTESHR ENSTTRP00000011748/1-770 RQKIKKICDG FRATIYPCPE PASERREMLD GVNMRLEDLI TVITQTESHR 401 450 ENSP00000308122/1-840 QRLLQEAAAN WHSWLIKVQK MKAVYHILNM CNIDVTQQCV IAEIWFPVAD ENSBTAP00000005588/1-834 QSLLQEAAAN WHSWVIKVQK MKAIYHILNL CNIDITQQCV IAEIWFPVAD BACU006755/1-937 QRLLQEAAAN WHSWVIKVHK MKAIYHVLNM CNIDVTQQCI IAEIWFPVAD bmy_21955T0/1-806 QRLLQEAAAN WHSWVIKVHK MKAIYHILNM CNIDVTQQ-- ---------- ENSTTRP00000011748/1-770 QHLLQEAAAS WHSWVIKVHK MKAIYHVLNM CNIDVTQQCV IAEIWFPVAD 451 500 ENSP00000308122/1-840 ATRIKRALEQ GMELSGSSMA PIMTTVQSKT APPTFNRTNK FTAGFQNIVD ENSBTAP00000005588/1-834 TVRIRRALEQ GVELSGSSMV PILTAVQSKT APPTFNRTNK FTAGFQNIVD BACU006755/1-937 TVRIRRALEQ GVELSGSAMV PIMTAVQSKR APPTFNRTNK FTAGFQNIVD bmy_21955T0/1-806 ---------- ---------- ---------- -------TNK FTAGFQNIVD ENSTTRP00000011748/1-770 AVRIRRALEQ GMELSGSSMV PIMTAVQSKT APPTFNRTNK FTAGFQNIVD 501 550 ENSP00000308122/1-840 AYGVGSYREI NPAPYTIITF PFLFAVMFGD CGHGTVMLLA ALWMILNERR ENSBTAP00000005588/1-834 AYGIGSYREM NPAPYTIITF PFLFAVMFGD CGHGTVMFLA ALWMVLNEKH BACU006755/1-937 AYGVGSYREM NPAPYTIITF PFLFAVMFGD CGHGIVMLLA ALWMVLNERR bmy_21955T0/1-806 AYGVGSYREM NPAPYTIITF PFLFAVMFGD CGHGIVMLLA ALWMVLNERR ENSTTRP00000011748/1-770 AYGVGSYREM NPAPYTIITF PFLFAVMFGD CGHGIVMLLA ALWMVLNERR 551 600 ENSP00000308122/1-840 LLSQKTDNEI WNTFFHGRYL ILLMGIFSIY TGLIYNDCFS KSLNIFGSSW ENSBTAP00000005588/1-834 LLAQKSTNEI WNTFFHGRYL ILLMGIFSIY TGLIYNDCFA KSLNIFGSSW BACU006755/1-937 LLSQKTTNEI WNTFFHGRYL ILLMGIFSIY TGLIYNDCFS KSFNIFGSSW bmy_21955T0/1-806 LLSQKTTNEI WNTFFHGRYL LLLMGIFSIY TGLIYNDCFS KSFNIFGSSW ENSTTRP00000011748/1-770 LLSQKTTNEI WDTFFHGRYL ILLLGIFSIY TGLIYNDCFS KSFNIFGSSW 601 650 ENSP00000308122/1-840 SVQPMFRNGT WNTHVMEESL YLQLDPAIPG VYFGNPYPFG IDPIWNLASN ENSBTAP00000005588/1-834 SVQPMFRNGT WSMQVLKTNP LLQLDPAVPG VYSGNPYPFG IDPIWNLASN BACU006755/1-937 SVQPMFRNGT WNTQVMETNP HLQLDPAVPG VYSGNPYPFG IDPIWNLASN bmy_21955T0/1-806 SVQPMFRNGT WNTQVMETNP HLQLDPAVPG VYSGNPYPFG IDPIWNLASN ENSTTRP00000011748/1-770 SVQPMFRNGT WNTQVMETNP YLQLDPAVPG VYSGNPYPFG IDPVWNLASN 651 700 ENSP00000308122/1-840 KLTFLNSYKM KMSVILGIVQ MVFGVILSLF NHIYFRRTLN IILQFIPEMI ENSBTAP00000005588/1-834 KLTFLNSYKM KMSVILGIVQ MVFGVILSLF NYRFFRNTLN IILQFIPEMI BACU006755/1-937 KLTFLNSYKM KMSVILGIVQ MVFGVILSLF NHIFFRNTLN IILQFIPEMI bmy_21955T0/1-806 KLTFLNSYKM KMSVILGIVQ MVFGVILSLF NHIFFRNTLN IILQFIPEMI ENSTTRP00000011748/1-770 KLTFLNSYKM KMSVILGIVQ MVFGVILSLF NHIFFRNTLN IVLQFIPEMI 701 750 ENSP00000308122/1-840 FILCLFGYLV FMIIFKWCCF DVHVSQHAPS ILIHFINMFL FNYSDSSNAP ENSBTAP00000005588/1-834 FILSLFGYLV FMIIFKWCSF DVSVSRRAPS ILIHFINMFL FNYKDSSNVP BACU006755/1-937 FILCLFGYLV FMIIFKWCSF DVSVSRQAPS ILIHFINMFL FNYNDPSNAP bmy_21955T0/1-806 FILCLFGYLV FMIIFKWCSF DVSVSRRAPS ILIHFINMFL FNYNDPSNAP ENSTTRP00000011748/1-770 FILCLFGYLV FMIIFKWCSF DVSVSRRAPS ILIHFINMFL FNYNDPSNAP 751 800 ENSP00000308122/1-840 LYKHQQEVQS FFV-----VM ALISVPWMLL IKPFILRASH RKSQLQASRI ENSBTAP00000005588/1-834 LYQHQQKVQS FFV-----IM ALISVPWMLL IKPFILRANH RKSQLQASRI BACU006755/1-937 LYKHQLQASR IQEDATEDIE GDNSNP---- ----SVRPGH RASA------ bmy_21955T0/1-806 LYKHQQEVQS FFV-----IM ALISVPWMLL IKPFILRASH QKSQ------ ENSTTRP00000011748/1-770 LYEHQQEVQS FCV-----IM ALISVPWMLL IKPFILRASH RRSQXXXXXX 801 850 ENSP00000308122/1-840 QEDATENIEG DSSSPSSRSG QRTSADTHGA LDDHGEEFNF GDVFVHQAIH ENSBTAP00000005588/1-834 PEDTTENTEG DNSGHIASVG ------AHGA QDDHDQEFNF GDIFVHQAIH BACU006755/1-937 ---------- ---------G ------AHGA QDDHDEEFNF GDIFVHQAIH bmy_21955T0/1-806 ---------- ---------- ---------- -------FNF GDIFVHQAIH ENSTTRP00000011748/1-770 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXFSF GDVFVHQAIH 851 900 ENSP00000308122/1-840 TIEYCLGCIS NTASYLRLWA LSLAHAQ--- ---------- ---------- ENSBTAP00000005588/1-834 TIEYCLGCIS NTASYLRLWA LSLAHAQ--- ---------- ---------- BACU006755/1-937 TIEYCLGCIS NTASYLRLWA LSLAHAQSKT FTVEDAVETI GSGCFHVALF bmy_21955T0/1-806 TIEYCLGCIS NTASYLRLWA LSLAHAQ--- ---------- ---------- ENSTTRP00000011748/1-770 TIEYCLGCIS NTASYLRLWA LSLAHAQ--- ---------- ---------- 901 950 ENSP00000308122/1-840 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005588/1-834 ---------- ---------- ---------- ---------- ---------- BACU006755/1-937 LIMRSTGVAE AMEIMLIAVV SPVIRCEWQL ENWQVALVTT MVFFGYMVFS bmy_21955T0/1-806 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011748/1-770 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000308122/1-840 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005588/1-834 ---------- ---------- ---------- ---------- ---------- BACU006755/1-937 ILFGLLADRY GRWKILLISF LWGAYFSLLT SFSPSYIWFV FLRTMVGCGV bmy_21955T0/1-806 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011748/1-770 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000308122/1-840 ---------- ---------- ----LSEVLW TM--VMNSGL QTR-----GW ENSBTAP00000005588/1-834 ---------- ---------- ----LSEVLW TM--VMHIGL RTR-----GW BACU006755/1-937 SGHAQGLIIK TEFLPTKYQG YVLPLSQVFW LTGSLLIIGL ASMVIPTIGW bmy_21955T0/1-806 ---------- ---------- ----LSEVLW TM--VMNIGL RVQ-----GW ENSTTRP00000011748/1-770 ---------- ---------- ----LSEVLW TM--VMNIGL RVQ-----GW 1051 1100 ENSP00000308122/1-840 GGIVGVFIIF AVFAVLTVAI LLIMEGLSA- ---------- --FLHALRL- ENSBTAP00000005588/1-834 GGLVGVFIIF AVFAVLTVAI LLIMEGLSA- ---------- --FLHALRL- BACU006755/1-937 RWLIRITSIP GIVLTVAFMV TKLMGSLLAS PPAGPVALLP HRYLSHVHLS bmy_21955T0/1-806 GGLIGVFIIF AIFAVLTPSF ---------- ---------- ---------- ENSTTRP00000011748/1-770 GGLIGVFIIF AIFAVLTVAI LLIMEGLSA- ---------- --FLHALRL- 1101 1150 ENSP00000308122/1-840 -HWVEFQNKF YVGDGYK--- ---------- ---------- -----FSPFS ENSBTAP00000005588/1-834 -HWVEFQNKF YTGAGYK--- ---------- ---------- -----FSPFS BACU006755/1-937 PYFIPESARF NVSTGNTQAA LVPLEHIAKM NRSVMPEGKL VAAIMASPNQ bmy_21955T0/1-806 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011748/1-770 -H-------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000308122/1-840 FKHILDGTAE E ENSBTAP00000005588/1-834 FKQILDGTAE E BACU006755/1-937 GSPEIPLVVE D bmy_21955T0/1-806 ---------- - ENSTTRP00000011748/1-770 ---------- -