KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:58 2014 Check: 00 .. Name: bmy_04021T0/1-259 Len: 351 Check: 3296 Weight: 1.00 Name: BACU005650/1-202 Len: 351 Check: 5451 Weight: 1.00 Name: ENSP00000379762/1-350 Len: 351 Check: 8898 Weight: 1.00 Name: ENSTTRP00000009997/1-282 Len: 351 Check: 7487 Weight: 1.00 Name: ENSBTAP00000005599/1-349 Len: 351 Check: 742 Weight: 1.00 // 1 50 bmy_04021T0/1-259 MRRHLG---- ---------- ---------- ---------- ---------- BACU005650/1-202 ---------- ---------- ---------- ---------- ---------M ENSP00000379762/1-350 MQRLGATLLC LLLAAAVPTA PAPAPTATSA PVKPGPALSY PQEEATLNEM ENSTTRP00000009997/1-282 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005599/1-349 MRRLGGTLLY LLLAAAVPTA PAPAPTVTSA SIEPGPALSY PQEEATLNEM 51 100 bmy_04021T0/1-259 WRAECQLHPP RVSKLAAAF- ---ARQPWTP DQDPQEAPQQ PPSC------ BACU005650/1-202 FREVEELMED TQHKLRSAVE EMEAEEAAAK TSSEVNLARL PPSYHNETNT ENSP00000379762/1-350 FREVEELMED TQHKLRSAVE EMEAEEAAAK ASSEVNLANL PPSYHNETNT ENSTTRP00000009997/1-282 ---------- -------AVE EMEAEEAAAK TSSEVNLARL PPSYHNETNT ENSBTAP00000005599/1-349 FREVEELMED TQYKLRSAVE EMEAEEAAAK TSSEVTLAHL PPSYHNETNT 101 150 bmy_04021T0/1-259 ---------- ---------- TASAALLFTE ---------- ------CIID BACU005650/1-202 ETKVGNNTIH VHREIHKITN NQTGQMVFSE TVITSMGDEE GRRSHG---- ENSP00000379762/1-350 DTKVGNNTIH VHREIHKITN NQTGQMVFSE TVITSVGDEE GRRSHECIID ENSTTRP00000009997/1-282 ETKVGNNTIH VHREIHKITN NQTGQMVFSE TVITSMGDEE GKRSHECIID ENSBTAP00000005599/1-349 ETKVGNNTIH VHREIHKITN NRTGQMVFSE TVITSMGDEE GKRSHECIID 151 200 bmy_04021T0/1-259 EDCGPGRYCQ FSSFEYSCQP CRDQQTLCTR DSECCGDQLC VWGHCTKTAT BACU005650/1-202 ---------- ----EHT--P CRKAKS---- ---------- ---------- ENSP00000379762/1-350 EDCGPSMYCQ FASFQYTCQP CRGQRMLCTR DSECCGDQLC VWGHCTKMAT ENSTTRP00000009997/1-282 EDCGPGRYCQ FSSFEYSCQP CRDQQTLCTR DSECCGDQLC VWGHCTRTAT ENSBTAP00000005599/1-349 EDCGPSRYCQ FSSFEYSCQP CRDQQTLCTR DSECCGDQLC VWGRCTKTST 201 250 bmy_04021T0/1-259 KGGNGTICDN QRDCQ-PGLC CAFQRGLLFP VCTPLPVEGE LCHDPASRLL BACU005650/1-202 ---------- -KSCSVPALA EPF------- ---------- ---------- ENSP00000379762/1-350 RGSNGTICDN QRDCQ-PGLC CAFQRGLLFP VCTPLPVEGE LCHDPASRLL ENSTTRP00000009997/1-282 KGGNGTICDN QRDCQ-PGLC CAFQRGLLFP VCTPLPVEGE LCHDPASRLL ENSBTAP00000005599/1-349 AGSNGTICDN QRDCQ-PGLC CAFQRGLLFP VCTPLPVEGE LCHDPASRLL 251 300 bmy_04021T0/1-259 DLITWELEPD GALDRCPCAS GLLCQPQSHS LVYVCKPTFV GGRDEDGANL BACU005650/1-202 ---------- ------PSPT ALLGF-GGHS LVYMCKPTFV GGRDEDGANL ENSP00000379762/1-350 DLITWELEPD GALDRCPCAS GLLCQPHSHS LVYVCKPTFV GSRDQDGEIL ENSTTRP00000009997/1-282 DLITWELEPD GALDRCPCAS GLLCQPHSHS LVYVCKPTFV GGRDEDGANL ENSBTAP00000005599/1-349 DLITWELEPD GALDRCPCAS GLLCQPHSHS LVYVCKPTFV GGRDEDGESL 301 350 bmy_04021T0/1-259 VPRDVPDEYE DGGFIEEVRR ELENLERSLS VEMALREL-G AASELLEGEE BACU005650/1-202 VPRDVPDEYE DGGFIEEVRR ELENLERSLS VEMALREL-G AASELLEGEE ENSP00000379762/1-350 LPREVPDEYE VGSFMEEVRQ ELEDLERSLT EEMALREPAA AAAALLGGEE ENSTTRP00000009997/1-282 VPRDVPDEYE DGGFIEEVRR ELENLERSLS VEMALREL-G AASELLEGEE ENSBTAP00000005599/1-349 VPREAPDEYE DGGFMEEVRR ELENLERSLS VEMALGEP-G AASELLEGEE 351 400 bmy_04021T0/1-259 I BACU005650/1-202 I ENSP00000379762/1-350 I ENSTTRP00000009997/1-282 I ENSBTAP00000005599/1-349 I