KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:26:59 2014 Check: 00 ..
Name: bmy_14578T0/1-245 Len: 470 Check: 3015 Weight: 1.00
Name: ENSTTRP00000004634/1-467 Len: 470 Check: 5524 Weight: 1.00
Name: ENSBTAP00000005604/1-459 Len: 470 Check: 2521 Weight: 1.00
Name: ENSP00000367794/1-464 Len: 470 Check: 6962 Weight: 1.00
Name: BACU003827/1-462 Len: 470 Check: 9169 Weight: 1.00
//
1 50
bmy_14578T0/1-245 ---------- ---------- ---------- ---------- --MTLEDA--
ENSTTRP00000004634/1-467 -MGSPALRPA LLPLLPLLLL LLLLLLLRVP PSRGFPG--S GDSPLEDDEV
ENSBTAP00000005604/1-459 -MGSPALRPA LLLLLP---- ----LLLRVP PSRGFPG--S GDSPLEDDEV
ENSP00000367794/1-464 -MGSPAHRPA LLLLLP---P LLLLLLLRVP PSRSFPG--S GDSPLEDDEV
BACU003827/1-462 MNGHKSFYSW LCVLIA---- ----PLAWTV PKQCFKNIRS GDSPLEDDEV
51 100
bmy_14578T0/1-245 ---------- ---------- ---------- ----TEFSPA AALRG-----
ENSTTRP00000004634/1-467 AYSHARYKDT PWCSPIKVKY GDVYCRAPQG GYYKTALGTR CDIRCQKGYE
ENSBTAP00000005604/1-459 VYSDAKYKDI PWCSPIKVKY GDVYCRAPQG GYYKTTLGTR CDIRCQKGYE
ENSP00000367794/1-464 GYSHPRYKDT PWCSPIKVKY GDVYCRAPQG GYYKTALGTR CDIRCQKGYE
BACU003827/1-462 AYSHARYKDT PWCSPIKVKY GDVYCRAPQG GYYKTALGTR CDIRCQKGYE
101 150
bmy_14578T0/1-245 ---------- ---------- CKGKLEPAT- ------MKEC CQLYLASRGQ
ENSTTRP00000004634/1-467 LHGSSQLICQ SNRRWSDKVI CKXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSBTAP00000005604/1-459 LQGSPQVICQ SNKRWSDKVI CKQKRCPTLA MPVNGGFKCI DGAYFNSQCE
ENSP00000367794/1-464 LHGSSLLICQ SNKRWSDKVI CKQKRCPTLA MPANGGFKCV DGAYFNSRCE
BACU003827/1-462 LHGSSQLICQ SNKRWSDKVI CKQKRCPTLA MPANGGFKCV DGAYFNSRCE
151 200
bmy_14578T0/1-245 --VDEIFPAD GENILVLFA- ---------- -DIEPPRIKC PSVKERIAEP
ENSTTRP00000004634/1-467 XXXXXXXXXX XXXXXXXXXX XXXXXRPASC VDIEPPRIKC PSVKERIAEP
ENSBTAP00000005604/1-459 YYCSPGYTLK GEQTVRCMDN KAWSGQPATC VDLEPPRIKC PSVKERVAEP
ENSP00000367794/1-464 YYCSPGYTLK GERTVTCMDN KAWSGRPASC VDMEPPRIKC PSVKERIAEP
BACU003827/1-462 YYCSPGYTLK GEQTVTCMDN KAWSGRPASC VDIEPPRIKC PSVKERIAEP
201 250
bmy_14578T0/1-245 NKLTVRVSWE TPEGRDTADG ILTDVILKGL PPGSHFPEGD HKIQYTVYDR
ENSTTRP00000004634/1-467 NKLTVRVSWE TPEGRDTADG ILTDVILKGL PPGSHFPEGD HKIQYTVYDR
ENSBTAP00000005604/1-459 NKLTVRVSWE TPEGRDTADG ILTDVILKGP PPGSHFPEGD HKIQYTVYDR
ENSP00000367794/1-464 NKLTVRVSWE TPEGRDTADG ILTDVILKGL PPGSNFPEGD HKIQYTVYDR
BACU003827/1-462 NKLTVRVSWE TPEGRDTADG ILTDVILKGL PPGSHFPEGD HKIQYTVYDR
251 300
bmy_14578T0/1-245 AENKGICKFR VKVRVRRCGK LNAPENGYMK CSSDGDNYGA TCEFSCIGGY
ENSTTRP00000004634/1-467 AENKGICKFR VKVRVRRCGK LNAPENGYMK CSSDGDNYGA TCEFSCIGGY
ENSBTAP00000005604/1-459 AENKGTCQFR VKVRVRRCGK LHAPENGYMK CSSDGDNYGA VCEFSCVGGY
ENSP00000367794/1-464 AENKGTCKFR VKVRVKRCGK LNAPENGYMK CSSDGDNYGA TCEFSCIGGY
BACU003827/1-462 AENKGICKFR VKVRVRRCGK LNAPENGYMK CSSDGDNYGA TCEFSCIGGY
301 350
bmy_14578T0/1-245 ELQGSPARVC QSNLAWSGTE PTCAAMNVNV GVRTAAALLD QFYEKRRLLI
ENSTTRP00000004634/1-467 ELQGSPARVC QSNLAWSGTE PTCAAMNVNV GVRTAAALLD QFYEKRRLLI
ENSBTAP00000005604/1-459 ELQGSSARVC QSNLAWSGTE PTCTAMNVNV GVRTAAALLD QFYEKRRLFI
ENSP00000367794/1-464 ELQGSPARVC QSNLAWSGTE PTCAAMNVNV GVRTAAALLD QFYEKRRLLI
BACU003827/1-462 ELQGSPARVC QSNLAWSGTE PTCAAMNVNV GVRTAAALLD QFYEKRRLLI
351 400
bmy_14578T0/1-245 VSTPTARNLL YRLQLGMLQ- ---------- ---------- ----------
ENSTTRP00000004634/1-467 VSTPTARNLL YRLQLGMLQQ AQCGLDLRHI TVVELVGVFP TLIGRIGAKI
ENSBTAP00000005604/1-459 VSTPTARNLL YRLQLGMLQQ AQCGLDLRHI TVVELVGVFP TLIGRIGAKV
ENSP00000367794/1-464 VSTPTARNLL YRLQLGMLQQ AQCGLDLRHI TVVELVGVFP TLIGRIGAKI
BACU003827/1-462 VSTPTARNLL YRLQLGMLQQ AQCGLDLRHI TIVELVGVFP TLIGRIGAKI
401 450
bmy_14578T0/1-245 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000004634/1-467 MPPALALQLR LLLRIPLYSF SMVLVDKHGM DRERYVSLVT PVALFTLIDT
ENSBTAP00000005604/1-459 MPPALALQLR LLLRIPLYSF SIVVLDKHGV DKERYVSLVT PVALFNLIDT
ENSP00000367794/1-464 MPPALALQLR LLLRIPLYSF SMVLVDKHGM DKERYVSLVM PVALFNLIDT
BACU003827/1-462 MPPALALQLR LLLRIPLYSF SMVLVDKHGM DKERYVSLAT PVALFNLIDT
451 500
bmy_14578T0/1-245 ---------- ----------
ENSTTRP00000004634/1-467 FPLRKEEMVL QAEMGQTCNT
ENSBTAP00000005604/1-459 FPLRKEEMVL QAEMGQTCNT
ENSP00000367794/1-464 FPLRKEEMVL QAEMSQTCNT
BACU003827/1-462 FPLRKEEMVL QAEMGQTCNT