KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:59 2014 Check: 00 .. Name: bmy_14578T0/1-245 Len: 470 Check: 3015 Weight: 1.00 Name: ENSTTRP00000004634/1-467 Len: 470 Check: 5524 Weight: 1.00 Name: ENSBTAP00000005604/1-459 Len: 470 Check: 2521 Weight: 1.00 Name: ENSP00000367794/1-464 Len: 470 Check: 6962 Weight: 1.00 Name: BACU003827/1-462 Len: 470 Check: 9169 Weight: 1.00 // 1 50 bmy_14578T0/1-245 ---------- ---------- ---------- ---------- --MTLEDA-- ENSTTRP00000004634/1-467 -MGSPALRPA LLPLLPLLLL LLLLLLLRVP PSRGFPG--S GDSPLEDDEV ENSBTAP00000005604/1-459 -MGSPALRPA LLLLLP---- ----LLLRVP PSRGFPG--S GDSPLEDDEV ENSP00000367794/1-464 -MGSPAHRPA LLLLLP---P LLLLLLLRVP PSRSFPG--S GDSPLEDDEV BACU003827/1-462 MNGHKSFYSW LCVLIA---- ----PLAWTV PKQCFKNIRS GDSPLEDDEV 51 100 bmy_14578T0/1-245 ---------- ---------- ---------- ----TEFSPA AALRG----- ENSTTRP00000004634/1-467 AYSHARYKDT PWCSPIKVKY GDVYCRAPQG GYYKTALGTR CDIRCQKGYE ENSBTAP00000005604/1-459 VYSDAKYKDI PWCSPIKVKY GDVYCRAPQG GYYKTTLGTR CDIRCQKGYE ENSP00000367794/1-464 GYSHPRYKDT PWCSPIKVKY GDVYCRAPQG GYYKTALGTR CDIRCQKGYE BACU003827/1-462 AYSHARYKDT PWCSPIKVKY GDVYCRAPQG GYYKTALGTR CDIRCQKGYE 101 150 bmy_14578T0/1-245 ---------- ---------- CKGKLEPAT- ------MKEC CQLYLASRGQ ENSTTRP00000004634/1-467 LHGSSQLICQ SNRRWSDKVI CKXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000005604/1-459 LQGSPQVICQ SNKRWSDKVI CKQKRCPTLA MPVNGGFKCI DGAYFNSQCE ENSP00000367794/1-464 LHGSSLLICQ SNKRWSDKVI CKQKRCPTLA MPANGGFKCV DGAYFNSRCE BACU003827/1-462 LHGSSQLICQ SNKRWSDKVI CKQKRCPTLA MPANGGFKCV DGAYFNSRCE 151 200 bmy_14578T0/1-245 --VDEIFPAD GENILVLFA- ---------- -DIEPPRIKC PSVKERIAEP ENSTTRP00000004634/1-467 XXXXXXXXXX XXXXXXXXXX XXXXXRPASC VDIEPPRIKC PSVKERIAEP ENSBTAP00000005604/1-459 YYCSPGYTLK GEQTVRCMDN KAWSGQPATC VDLEPPRIKC PSVKERVAEP ENSP00000367794/1-464 YYCSPGYTLK GERTVTCMDN KAWSGRPASC VDMEPPRIKC PSVKERIAEP BACU003827/1-462 YYCSPGYTLK GEQTVTCMDN KAWSGRPASC VDIEPPRIKC PSVKERIAEP 201 250 bmy_14578T0/1-245 NKLTVRVSWE TPEGRDTADG ILTDVILKGL PPGSHFPEGD HKIQYTVYDR ENSTTRP00000004634/1-467 NKLTVRVSWE TPEGRDTADG ILTDVILKGL PPGSHFPEGD HKIQYTVYDR ENSBTAP00000005604/1-459 NKLTVRVSWE TPEGRDTADG ILTDVILKGP PPGSHFPEGD HKIQYTVYDR ENSP00000367794/1-464 NKLTVRVSWE TPEGRDTADG ILTDVILKGL PPGSNFPEGD HKIQYTVYDR BACU003827/1-462 NKLTVRVSWE TPEGRDTADG ILTDVILKGL PPGSHFPEGD HKIQYTVYDR 251 300 bmy_14578T0/1-245 AENKGICKFR VKVRVRRCGK LNAPENGYMK CSSDGDNYGA TCEFSCIGGY ENSTTRP00000004634/1-467 AENKGICKFR VKVRVRRCGK LNAPENGYMK CSSDGDNYGA TCEFSCIGGY ENSBTAP00000005604/1-459 AENKGTCQFR VKVRVRRCGK LHAPENGYMK CSSDGDNYGA VCEFSCVGGY ENSP00000367794/1-464 AENKGTCKFR VKVRVKRCGK LNAPENGYMK CSSDGDNYGA TCEFSCIGGY BACU003827/1-462 AENKGICKFR VKVRVRRCGK LNAPENGYMK CSSDGDNYGA TCEFSCIGGY 301 350 bmy_14578T0/1-245 ELQGSPARVC QSNLAWSGTE PTCAAMNVNV GVRTAAALLD QFYEKRRLLI ENSTTRP00000004634/1-467 ELQGSPARVC QSNLAWSGTE PTCAAMNVNV GVRTAAALLD QFYEKRRLLI ENSBTAP00000005604/1-459 ELQGSSARVC QSNLAWSGTE PTCTAMNVNV GVRTAAALLD QFYEKRRLFI ENSP00000367794/1-464 ELQGSPARVC QSNLAWSGTE PTCAAMNVNV GVRTAAALLD QFYEKRRLLI BACU003827/1-462 ELQGSPARVC QSNLAWSGTE PTCAAMNVNV GVRTAAALLD QFYEKRRLLI 351 400 bmy_14578T0/1-245 VSTPTARNLL YRLQLGMLQ- ---------- ---------- ---------- ENSTTRP00000004634/1-467 VSTPTARNLL YRLQLGMLQQ AQCGLDLRHI TVVELVGVFP TLIGRIGAKI ENSBTAP00000005604/1-459 VSTPTARNLL YRLQLGMLQQ AQCGLDLRHI TVVELVGVFP TLIGRIGAKV ENSP00000367794/1-464 VSTPTARNLL YRLQLGMLQQ AQCGLDLRHI TVVELVGVFP TLIGRIGAKI BACU003827/1-462 VSTPTARNLL YRLQLGMLQQ AQCGLDLRHI TIVELVGVFP TLIGRIGAKI 401 450 bmy_14578T0/1-245 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004634/1-467 MPPALALQLR LLLRIPLYSF SMVLVDKHGM DRERYVSLVT PVALFTLIDT ENSBTAP00000005604/1-459 MPPALALQLR LLLRIPLYSF SIVVLDKHGV DKERYVSLVT PVALFNLIDT ENSP00000367794/1-464 MPPALALQLR LLLRIPLYSF SMVLVDKHGM DKERYVSLVM PVALFNLIDT BACU003827/1-462 MPPALALQLR LLLRIPLYSF SMVLVDKHGM DKERYVSLAT PVALFNLIDT 451 500 bmy_14578T0/1-245 ---------- ---------- ENSTTRP00000004634/1-467 FPLRKEEMVL QAEMGQTCNT ENSBTAP00000005604/1-459 FPLRKEEMVL QAEMGQTCNT ENSP00000367794/1-464 FPLRKEEMVL QAEMSQTCNT BACU003827/1-462 FPLRKEEMVL QAEMGQTCNT