KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:59 2014 Check: 00 .. Name: BACU014822/1-703 Len: 904 Check: 8031 Weight: 1.00 Name: ENSTTRP00000001537/1-632 Len: 904 Check: 2656 Weight: 1.00 Name: ENSP00000316924/1-689 Len: 904 Check: 7650 Weight: 1.00 Name: bmy_13511T0/1-565 Len: 904 Check: 3056 Weight: 1.00 Name: ENSBTAP00000005606/1-624 Len: 904 Check: 781 Weight: 1.00 // 1 50 BACU014822/1-703 PAGPGPGSGC EGPAAAPCAG PGLWGSCLAR GALPLGLGLL CSFGAQPPAA ENSTTRP00000001537/1-632 ---------- ---------- ---------- ---------- ---------- ENSP00000316924/1-689 MAARTLGRGV GR-------- ---------- --------LL GSLRGLSGQP bmy_13511T0/1-565 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005606/1-624 ---------- ---------- ---------- ---------- ---------- 51 100 BACU014822/1-703 ARAPCLLVAD VPFLPPEGPE PSAPQVPGRP PTPAARQKRS ESVSTSDEDS ENSTTRP00000001537/1-632 ---------- ---------- ---------- ---------- ---------- ENSP00000316924/1-689 ARPPCGVSA- -PRRAASGPS GSAPAVAAAA AQPGS----- ---------- bmy_13511T0/1-565 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005606/1-624 ---------- ---------- ---------- ---------- ---------- 101 150 BACU014822/1-703 PSEDRSDLKA SPAPGKRKKR RHRTVFTAHQ LEELEKAFSE AHYPDVYARE ENSTTRP00000001537/1-632 -YQERIALPA ---------- ---------- ---------- ---------- ENSP00000316924/1-689 -YPALSAQAA ---------- ---------- ---------- ---------- bmy_13511T0/1-565 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005606/1-624 ---------X ---------- ---------- ---------- ---------- 151 200 BACU014822/1-703 MLAVKTELPE DRIQVWFQNR RAKWRKREKR WDGSSVMAEY GLYGAMVRHC ENSTTRP00000001537/1-632 ---------- ---------- ---------- ---------- ---------- ENSP00000316924/1-689 ---------- ---------- ---------- ---------- ---------- bmy_13511T0/1-565 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005606/1-624 ---------- ---------- ---------- ---------- ---------- 201 250 BACU014822/1-703 IPLPDSVLGS AEGGLLGSCV PWLLGLPHLY LPTCSLRQQR VLPVLRAGTS ENSTTRP00000001537/1-632 ---------- ---------- ---------- ---------- ---------- ENSP00000316924/1-689 ---------- ---------- ---------- ---------- ---------- bmy_13511T0/1-565 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005606/1-624 ---------- ---------- ---------- ---------- ---------- 251 300 BACU014822/1-703 VTRTAWTTGC SQNCRGPTGS RSVDVARRRE PAAFWGPLAR DVLVWDTPFH ENSTTRP00000001537/1-632 ---------- ---------- --------SE PAAIWGPLAR DVLVWDTPYH ENSP00000316924/1-689 ---------- ---------- --------RE PAAFWGPLAR DTLVWDTPYH bmy_13511T0/1-565 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005606/1-624 ---------- ---------- --------RE PAAFWGPLAR DALVWDTPYH 301 350 BACU014822/1-703 TVSDCDFRSG RIGWFLGGQL NVSVNCLDQH VRKSPESVAL IWEQDEPGTE ENSTTRP00000001537/1-632 TVSDCDFRSG RIGWFLGGQL NVSVNCLDQH VRKSPESVAL IWEQDEPGTE ENSP00000316924/1-689 TVWDCDFSTG KIGWFLGGQL NVSVNCLDQH VRKSPESVAL IWERDEPGTE bmy_13511T0/1-565 ----MTMRSG ---------- ---------- ---PPPSLTA L--------- ENSBTAP00000005606/1-624 TVSDCDFRSG RISWFLGGQL NVSVNCLDQH VQKSPESIAL IWERDEPGTE 351 400 BACU014822/1-703 VRITYRELLE TTCRLANTLK RHGVHRGDRV AIYMPVSPLA VAAMLACARI ENSTTRP00000001537/1-632 VRITYRELLE TTCRLANTLK RHGVHRGDRV AIYMPVSPLA VAAMLACARI ENSP00000316924/1-689 VRITYRELLE TTCRLANTLK RHGVHRGDRV AIYMPVSPLA VAAMLACARI bmy_13511T0/1-565 PSLCRRELLE TTCRLANTLK RHGVHRGDRV AIYMPVSPLA VAAMLACARI ENSBTAP00000005606/1-624 VKITYRELLE TTCRLANTLK RYGVRRGDRV AIYMPVSPLA VAAMLACARI 401 450 BACU014822/1-703 GAIHTVVFAG FSAGSLAGRI NDAKCKVVIT VNQGLRGGRV VELKKIVDEA ENSTTRP00000001537/1-632 GAIHTVVFAG FSAGSLAARI NDXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000316924/1-689 GAVHTVIFAG FSAESLAGRI NDAKCKVVIT FNQGLRGGRV VELKKIVDEA bmy_13511T0/1-565 GAIHTVVFAG FSAGSLAGRI NDAKCKVVIT FNQGLRGGRV VELKKIVDEA ENSBTAP00000005606/1-624 GAIHNVIFAG FSVGSLAGRI NDAQCKVVIT FNQGLRGGRV VQLKKIVDEA 451 500 BACU014822/1-703 VKLCPTIQHV LVAHRTDNKV HMGDLDIPLE QEMAKEEPVC APESMGSEDT ENSTTRP00000001537/1-632 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXE QEMAKEEPVC APESMGSEDT ENSP00000316924/1-689 VKHCPTVQHV LVAHRTDNKV HMGDLDVPLE QEMAKEDPVC APESMGSEDM bmy_13511T0/1-565 IKLCPTVQHV LVAHRTDNKV HMGDLDIPLE QEMAKEEPVC APESMGSEDT ENSBTAP00000005606/1-624 IKVCPSVQHV LVAHRTDNKV HMGHLDVSLE QEMAKEEPVC APESMGSEDI 501 550 BACU014822/1-703 LFLLYTSGST GTPKGLVHTQ AGYLLYAALT HRLNLDDND- -----VSDI- ENSTTRP00000001537/1-632 LFLLYTSGST GTPKGLVHTQ AGYLLYAAVT HRFVFDYRPG DVFGCVAXXX ENSP00000316924/1-689 LFMLYTSGST GMPKGIVHTQ AGYLLYAALT HKLVFDHQPG DIFGCVADIG bmy_13511T0/1-565 LFLLYTSGST GTPKGLVHTQ AGYLLYAALT HRFVFDYRPG DVFGCVADIG ENSBTAP00000005606/1-624 LFLLYTSGST GKPKGLVHTQ AGYLLYAALT HRLVFDYRPG DVFGCVADIG 551 600 BACU014822/1-703 ------LKLL ALQAEENLGM VMIFTLVTAV QEKLNEIVDQ IKTR------ ENSTTRP00000001537/1-632 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXRYWEMVQR LKINQFYGAP ENSP00000316924/1-689 WITGHSYVVY GPLCNGATSV LFESTPVYPN AGRYWETVER LKINQFYGAP bmy_13511T0/1-565 WITGHSYVVY GPLCNGATSV LFESTPVYPD AGRYWEMVQR LKINQFYGAP ENSBTAP00000005606/1-624 WITGHSYVVY GPLCNGATSV LFESTPVYPD AGRYWETVQR LKINQFYGAP 601 650 BACU014822/1-703 -------REE EKKQKEKEAE EAEKQLFHGT PVTIENFLSW KAKFDAE--- ENSTTRP00000001537/1-632 TAFRLLLKFE DSWVKKYDRS SLRTLGSVGE PINHEAW-EW LHRVVGDSRC ENSP00000316924/1-689 TAVRLLLKYG DAWVKKYDRS SLRTLGSVGE PINCEAW-EW LHRVVGDSRC bmy_13511T0/1-565 TAFRLLLKFE DSWVKKYDRS SLRTLGSVGE PINQEAW-EW LHRVVGDSRC ENSBTAP00000005606/1-624 TAYRLLLKFE DSWVKKYDRS SLRTLGSVGE PINHEAW-EW LHRVVGDSRC 651 700 BACU014822/1-703 ---------- ---------- ---------- ---------- --LLEIKKKR ENSTTRP00000001537/1-632 TLVDTWWQTE TGGICISPRP SEEGAEILPC MAMRPLFGIV PVLMDEKGNV ENSP00000316924/1-689 TLVDTWWQTE TGGICIAPRP SEEGAEILPA MAMRPFFGIV PVLMDEKGSV bmy_13511T0/1-565 TLVDTWWQTE TGGICISPRP SEEGAEILPC MAMRPLFGIV PVLMDEKGNV ENSBTAP00000005606/1-624 TLVDTWWQTE TGGICISPRP SEEGAEILPC MAMRPLFGIV PVLMDEKGNV 701 750 BACU014822/1-703 MKEEEQAGKN KLS------G RQLFETD--- ---------- ---------- ENSTTRP00000001537/1-632 LKGGDVSGAL CLSQAWPGMA RTIFGDHQRF LDAYFKAYPG YYFTGDGAYR ENSP00000316924/1-689 VEGSNVSGAL CISQAWPGMA RTIYGDHQRF VDAYFKAYPG YYFTGDGAYR bmy_13511T0/1-565 LKGGDVSGAL CLSQAWPGMA RTIFGDHQRF MDAYFEVYPG YYFTGDGAYR ENSBTAP00000005606/1-624 LEGGDVSGAL CLSQAWPGMA RTIYGDHQRF LDAYFETYPG YYFTGDGAYR 751 800 BACU014822/1-703 ---------- ---------- HNLDTSDIQF LEDAGNNVEV DES-LFQEMD ENSTTRP00000001537/1-632 TEDGYYQITG RMDDVINISG HRLGTAEIE- -DAMADHPAV PETAVIGYPH ENSP00000316924/1-689 TEGGYYQITG RMDDVINISG HRLGTAEIE- -DAIADHPAV PESAVIGYPH bmy_13511T0/1-565 TEDGYYQITG RMDDVINISG HRLGTAEIE- -DAMADHPAV PETAVVGYPH ENSBTAP00000005606/1-624 TEEGYYEITG RIDDVINISG HRLGTAEIE- -DAMADHPSV PETAVIGYPH 801 850 BACU014822/1-703 DLE------- --LEDDEDDP D--------- -------YSH AD-------- ENSTTRP00000001537/1-632 DIKGEAAFAF IVLKDDAGDA DVVVKELRSV VASKIAKYAV PDQVLVVKRL ENSP00000316924/1-689 DIKGEAAFAF IVVKDSAGDS DVVVQELKSM VATKIAKYAV PDEILVVKRL bmy_13511T0/1-565 DIKGEAAFAF VVLKDDVGDA DVVVKELRSV VASKIAKYAV PDQVLVVKRL ENSBTAP00000005606/1-624 DIKGEAAFAF VVLKDDVGDV DVVVKELRSV VADKIAKYAV PDQVLVVKRL 851 900 BACU014822/1-703 ---------- ---------R ESDLTD---- ---------- ---------- ENSTTRP00000001537/1-632 PKTRSGKVMR RLLRKIVTGG AQDLGDITTM EDPTVITEIL SAYQEYKDKW ENSP00000316924/1-689 PKTRSGKVMR RLLRKIITSE AQELGDTTTL EDPSIIAEIL SVYQKCKDKQ bmy_13511T0/1-565 PKTRSGKVMR RLLRKIVTGR AQDLGDTTTL EDPTVITEIL SAYQEYKAKW ENSBTAP00000005606/1-624 PKTRSGKVMR RLLRKIVMGR AQDLGDTTTL EDPGVITEIL SAYQEYKDKR 901 950 BACU014822/1-703 ---- ENSTTRP00000001537/1-632 GAAQ ENSP00000316924/1-689 AAAK bmy_13511T0/1-565 RAAQ ENSBTAP00000005606/1-624 GGAK