KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:00 2014 Check: 00 .. Name: BACU006113/1-927 Len: 1056 Check: 8119 Weight: 1.00 Name: ENSTTRP00000011746/1-1011 Len: 1056 Check: 8188 Weight: 1.00 Name: ENSP00000314724/1-1011 Len: 1056 Check: 4418 Weight: 1.00 Name: bmy_08041T0/1-601 Len: 1056 Check: 9253 Weight: 1.00 Name: ENSBTAP00000005615/1-1010 Len: 1056 Check: 979 Weight: 1.00 // 1 50 BACU006113/1-927 MMSDASDMLA AALEQMDGII A--GSKALEY SNGIFDCQSP TSPFMGSLRA ENSTTRP00000011746/1-1011 MMSDASDMLA AALEQMDGII A--GSKALEY SNGIFDCQSP TSPFMGSLRA ENSP00000314724/1-1011 MMSDASDMLA AALEQMDGII A--GSKALEY SNGIFDCQSP TSPFMGSLRA bmy_08041T0/1-601 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005615/1-1010 MMSDASDMLA AALEQMDGII ADLGSKALEY SNGIFDCQSP TSPFMGSLRA 51 100 BACU006113/1-927 LHLVEDLRGL LEMMEADEKE GLRCQIPDST AETLIEWLQS QMANGHLPGN ENSTTRP00000011746/1-1011 LHLVEDLRGL LEMMEADEKE GLRCQIPDST AETLVEWLQS QMTNGHLPGN ENSP00000314724/1-1011 LHLVEDLRGL LEMMETDEKE GLRCQIPDST AETLVEWLQS QMTNGHLPGN bmy_08041T0/1-601 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005615/1-1010 LHLVEDLRGL LEMMEADEKE GLRCQIPDST AETLIEWLQS QMTNGHLPGN 101 150 BACU006113/1-927 GDVYQERLAR LENDKESLVL QVSVLTDQVE AQGEKIRDLE FCLEEHREKL ENSTTRP00000011746/1-1011 GDVYQERLAR LENDKESLVL QVSVLTDQVE AQGEKIRDLE FCLEEHREKL ENSP00000314724/1-1011 GDVYQERLAR LENDKESLVL QVSVLTDQVE AQGEKIRDLE FCLEEHREKV bmy_08041T0/1-601 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005615/1-1010 GDVYQERLAR LENDKESLVL QVSVLTDQVE AQGEKIRDLE FCLEEHREKL 151 200 BACU006113/1-927 NATEEMLQQE LLSRTSLETQ KLDLMAEISN LKLKLTAVEK DRLDYEDRFR ENSTTRP00000011746/1-1011 NATEEMLQQE LLSRTSLETQ KLDLMAEISN LKLKLTAVEK DRLDYEDRFR ENSP00000314724/1-1011 NATEEMLQQE LLSRTSLETQ KLDLMAEISN LKLKLTAVEK DRLDYEDKFR bmy_08041T0/1-601 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005615/1-1010 NATEEMLQQE LLSRTSLETQ KLDLMAEISN LKLKLTAVEK DRLDYEDRFR 201 250 BACU006113/1-927 DTEGLMQEIN DLRLRVSEMD SERLQNEKKL KATKSLMAKL SSMKIKVGQM ENSTTRP00000011746/1-1011 DTEGLMQEIN DLRLRVTEMD NERLQNEKKL KSTKSLMAKL SSMKIKVGQM ENSP00000314724/1-1011 DTEGLIQEIN DLRLKVSEMD SERLQYEKKL KSTKSLMAKL SSMKIKVGQM bmy_08041T0/1-601 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005615/1-1010 DTEGLMQEIN DLRLRVSEME NERLQYEKKL KSTKSLMAKL SSMKIKVGQM 251 300 BACU006113/1-927 QYEKQRMEQK WESLKEELAS LKEQLEEKES EVKRLQEKLV CKMKGEGIEI ENSTTRP00000011746/1-1011 QYEKQRMEQK WESLKEELAS LKEQLEEKES EVKRLQEKLV CKMKGEGIEI ENSP00000314724/1-1011 QYEKQRMEQK WESLKDELAS LKEQLEEKES EVKRLQEKLV CKMKGEGVEI bmy_08041T0/1-601 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005615/1-1010 QYEKQRMEQK WESLKEELTS LKEQLEEKES EVRRLQEKLV CQMKGEGIEI 301 350 BACU006113/1-927 LDRDENFKKK LKDKNIEVQK MKKAVESLMA ANEEKDRKIE DLRQCLNRYK ENSTTRP00000011746/1-1011 LDRD------ -----IEVQK MKKAVESLMA ANEEKDRKIE DLRQCLNRYK ENSP00000314724/1-1011 VDRD------ -----IEVQK MKKAVESLMA ANEEKDRKIE DLRQCLNRYK bmy_08041T0/1-601 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005615/1-1010 LDRD------ -----IEVQK MKKAVESLMA ANEEKDRKIE DLRQCLNRYK 351 400 BACU006113/1-927 KMQDTVVLAQ GKKGQDGDFE DLLPSSSFST LLDAQGFSDL EKNLSSTPVM ENSTTRP00000011746/1-1011 KMQDTVVLAQ ---GQDGDFE DLLPSSSFST LLDAQGFSDL EKNLSSTPVM ENSP00000314724/1-1011 KMQDTVVLAQ ---GKDGEYE ELLNSSSISS LLDAQGFSDL EKSPSPTPVM bmy_08041T0/1-601 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005615/1-1010 KMQETVVLAP ---SQDGDFE DLLPSSSFST LLDAQGFSDL EKNLSPTPVR 401 450 BACU006113/1-927 GSPSHDPFNT SAPEEFHTSV LQVSIPSLLP ASKGLETSEK VKLPPKPEMS ENSTTRP00000011746/1-1011 GSPSHDPFNT SAPEEFHTSI LQVSIPSLLP ASKGLETSEK AKLPPKPETS ENSP00000314724/1-1011 GSPSCDPFNT SVPEEFHTTI LQVSIPSLLP ATVSMETSEK SKLTPKPETS bmy_08041T0/1-601 ---------- ----QFHTSV LQVSISSLLP ASKGLETSEK VKLPPKPETS ENSBTAP00000005615/1-1010 GSPSHDPFNT SAPEEFHTSI LQVSIPSLLP ASKGLETSEK AKLPSKPETP 451 500 BACU006113/1-927 FEENDGKLIL GSAVETQLCD SLSTSSLQKS SSLGNLKKES SDGEKESIPK ENSTTRP00000011746/1-1011 FEENDGKLIL GSAVETQLCD SLSTSSLQKS SSLGNLKKES SDGEKESILK ENSP00000314724/1-1011 FEENDGNIIL GATVDTQLCD KLLTSSLQKS SSLGNLKKET SDGEKETIQK bmy_08041T0/1-601 FEENDGKLIL GSAVETQLCD SL-------- -SLGI----- --DEKESIPK ENSBTAP00000005615/1-1010 FEESDE---I GSAAETQLCD SLATSSLQKS SSLGNLKKES SDGEKESIPK 501 550 BACU006113/1-927 PSEAKALVES SAFGSLPHKA PGHDASVDDN PFGTRKTRSS FGRGFFKIKS ENSTTRP00000011746/1-1011 PSEAKALVES SPFGSLPHKA PGHDASVDDN PFGTRKTRSS FGRGFFKIKS ENSP00000314724/1-1011 TSEDRAPAES RPFGTLPPRP PGQDTSMDDN PFGTRKVRSS FGRGFFKIKS bmy_08041T0/1-601 PSEAKALVES SPFGSLPHKA PGHDASVDDN PFGTRKTRSS FGRGFFKIKS ENSBTAP00000005615/1-1010 PSEDKAPVES SPFGTLPPKA PGHDASGDDN PFGTRKARSS FGRGFFKIKS 551 600 BACU006113/1-927 NKRTASAPNL DRKRSASAPT L--------- ---------A ETEKETPEHL ENSTTRP00000011746/1-1011 NKRTASAPNL ---------- ---------- ---------A ETEKETPEHL ENSP00000314724/1-1011 NKRTASAPNL ---------- ---------- ---------A ETEKETAEHL bmy_08041T0/1-601 NKRTASAPNL EMTVNDLGEK LAKNASMGLI QSLYSVLGIA ETEKETPEHL ENSBTAP00000005615/1-1010 NKRTASAPNL ---------- ---------- ---------A ETEKETPEHL 601 650 BACU006113/1-927 DLAGVSSQPK DSQGSSPFQI SPPSPDSKKK SRGIMRLFGK LRRSQSTTFN ENSTTRP00000011746/1-1011 DLAGVSSQPK DPQGSSPFQI SPPSPDSKKK SRGIMRLFGK LRRSQSTTFN ENSP00000314724/1-1011 DLAGASSRPK DSQRNSPFQI PPPSPDSKKK SRGIMKLFGK LRRSQSTTFN bmy_08041T0/1-601 DLAGVSSQPK DSQGSSPFQI SPPSPDSKKK SRGIMRLFGK LRRSQSTTFN ENSBTAP00000005615/1-1010 DLAGVSSRPK NSQGSSPFQM SPPSPDSKKK SRGIMRLFGK LRRSQSTTFN 651 700 BACU006113/1-927 PDDMSEPEFK RGGTRATAGP RLGWSRDLGQ SNSDLDMPFA KWTKEQVCNW ENSTTRP00000011746/1-1011 PDDMSEPEFK RGGTRATAGP RLGWSRDLGQ SNXXXXXXXX XXXXXXXXXX ENSP00000314724/1-1011 PDDMSEPEFK RGGTRATAGP RLGWSRDLGQ SNSDLDMPFA KWTKEQVCNW bmy_08041T0/1-601 PDDMSEPEFK RGGTRATAGP RLGWSRDLGQ SNSDLDMPFA KWTKEQVCNW ENSBTAP00000005615/1-1010 PDDMSESEFK RGGTRATAGP RLGWSRDLGQ SNSDLDMPFA KWTKDQVCSW 701 750 BACU006113/1-927 LVEQGLGSYL NSGKRWIASG QTLLQASQQD LEKELGIKHS LHRKKLQLAL ENSTTRP00000011746/1-1011 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXELGIKHL LHRKKLQLAL ENSP00000314724/1-1011 LMEQGLGSYL NSGKHWIASG QTLLQASQQD LEKELGIKHS LHRKKLQLAL bmy_08041T0/1-601 LVEQGLGSYL NSGKRWIASG QTLLQASQQD LEKELGIKHS LHRKKLQLAL ENSBTAP00000005615/1-1010 LVEQGLGSYL NSGKHWIASG QTLLQASQQD LEKELGIKHS LHRKKLQLAL 751 800 BACU006113/1-927 QALGSEEETN HGKLDFNWVT RWLDDIGLPQ YKTQFDEGRV DGRMLHYMTV ENSTTRP00000011746/1-1011 QALGSEEETN HGKLDFNWVT XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000314724/1-1011 QALGSEEETN HGKLDFNWVT RWLDDIGLPQ YKTQFDEGRV DGRMLHYMTV bmy_08041T0/1-601 QALGSEEETN HGKLDFNW-- ---------- YKTQFDEGRV DGRMLHYMTV ENSBTAP00000005615/1-1010 QALGSEEETN HGKLDFNWVT RWLDDIGLPQ YKTQFDEGRV DGRMLHYMTV 801 850 BACU006113/1-927 DDLLSLKVMS VLHHLSIKRA IQVLRINNFE PNCLRRRPSD E---VASEVE ENSTTRP00000011746/1-1011 DDLLSLKVMS VLHHLSIKRA IQVLRINNFE PNCLRRRPSD ENSITPSEVQ ENSP00000314724/1-1011 DDLLSLKVVS VLHHLSIKRA IQVLRINNFE PNCLRRRPSD ENTIAPSEVQ bmy_08041T0/1-601 DDLLSLKVMS VLHHLSIKRA IQVLRINNFE PNCLRRRPSD ENSITPSEVQ ENSBTAP00000005615/1-1010 DDLLSLKVVS VLHHLSIKRA IQVLRINNFE PNCLRRRPSD ENSITPSEVQ 851 900 BACU006113/1-927 VYTAYT---- FRACD----- ---------- ---------- ---------C ENSTTRP00000011746/1-1011 QWTNHRVMEW LRSVDLAEYA PNLRGSGVHG GLMVLEPRFN VETMAQLLNI ENSP00000314724/1-1011 KWTNHRVMEW LRSVDLAEYA PNLRGSGVHG GLMVLEPRFN VETMAQLLNI bmy_08041T0/1-601 QWTNHRVMEW LRSVDLAEYA PNLRGSGVHG GLM------- ------LLNI ENSBTAP00000005615/1-1010 QWTNHRVMEW LRSVDLAEYA PNLRGSGVHG GLMVLEPRFN VETMAQLLNI 901 950 BACU006113/1-927 PCGDT----- -KTHFLL--- ---EPSGKES VWFPQ----- ---SLKSSLI ENSTTRP00000011746/1-1011 PPSKTLLRRH LATHFNLLIG AEAQHQKRDA MELPDYVLLT ATAKVKPKKL ENSP00000314724/1-1011 PPNKTLLRRH LATHFNLLIG AEAQHQKRDA MELPDYVLLT ATAKVKPKKL bmy_08041T0/1-601 PPSKTLLRRH LATHFNLLIG TEAQHQKRDA MELPDYVLLT ATAKVKPKKL ENSBTAP00000005615/1-1010 PPSKTLLRRH LATHFNLLIG AEAQHQKRDA MELPDYVLLT ATAKVKPKKL 951 1000 BACU006113/1-927 YFSGFVFLY- -------SFL SPRD-----G STC------- ---------- ENSTTRP00000011746/1-1011 TFSNFGNLRK KKQEDGEEYV CPMELGQASG GTSKKGFKPG LDMHLYDEDD ENSP00000314724/1-1011 AFSNFGNLRK KKQEDGEEYV CPMELGQASG SASKKGFKPG LDMRLYEEDD bmy_08041T0/1-601 TFSNFGNLRK KKQEDGEEYI CPMELGQASG GTSKKGFKPG LDMHLYDEDD ENSBTAP00000005615/1-1010 TFSNFGNLRK KKQEDGEEYV CPMELGQASG GTSKKGFKPG LDVRLYDEDD 1001 1050 BACU006113/1-927 ------ITEA KDCV------ ------LVFL PPFLGVFYFP ASLSPKVKYH ENSTTRP00000011746/1-1011 LDRLEQMEDS EGTVRQIGAF SEGINNLTHM LKEDEMFKDF AARSPSASIT ENSP00000314724/1-1011 LDRLEQMEDS EGTVRQIGAF SEGINNLTHM LKEDDMFKDF AARSPSASIT bmy_08041T0/1-601 LDRLEQMEDS EGTVRQIGAF SEGINNLTHM LKEDDMFRDF AARSPSASIT ENSBTAP00000005615/1-1010 LDRLEQMEDS EGTVRQIGAF SEGINNLTHM LKEDDMFKDF AARSPSASIT 1051 1100 BACU006113/1-927 CEDYLS ENSTTRP00000011746/1-1011 DEDSNV ENSP00000314724/1-1011 DEDSNV bmy_08041T0/1-601 DEDSNV ENSBTAP00000005615/1-1010 DEDSNV