KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:00 2014 Check: 00 .. Name: ENSBTAP00000005623/1-616 Len: 770 Check: 5257 Weight: 1.00 Name: ENSP00000405726/1-598 Len: 770 Check: 7597 Weight: 1.00 Name: BACU017103/1-659 Len: 770 Check: 3936 Weight: 1.00 Name: bmy_02449T0/1-590 Len: 770 Check: 912 Weight: 1.00 Name: ENSTTRP00000014172/1-567 Len: 770 Check: 5251 Weight: 1.00 // 1 50 ENSBTAP00000005623/1-616 MFVSDFRKEF YEVVQSQRVL LFVASDVDAL CACKILQALF QCDHVQYTLV ENSP00000405726/1-598 MFVSDFRKEF YEVVQSQRVL LFVASDVDAL CACKILQALF QCDHVQYTLV BACU017103/1-659 MFVSDFRKEF YEVVQSQRVL LFVASDVDAL CACKILQALF QCDHVQYTLV bmy_02449T0/1-590 MFVSDFRKEF YEVVQS---- ---------- ---------- ---------- ENSTTRP00000014172/1-567 MFVSDFRKEF YEVLQSQRVL LFVASDVDAL CACKILQALF QCDHVQYTLV 51 100 ENSBTAP00000005623/1-616 PVSGWQELET AFLEHKEQFR YFILINCGSN VDLLDILQPD EEAVFFVCDT ENSP00000405726/1-598 PVSGWQELET AFLEHKEQFH YFILINCGAN VDLLDILQPD EDTIFFVCDT BACU017103/1-659 PVSGWQELET AFLEHKEQFH YFILINCGAN MDLLDILQPD EDTVFFVCDT bmy_02449T0/1-590 ---------- -------QFH YFILINCGAN VDLLDILQPD EDTVFFVCDT ENSTTRP00000014172/1-567 PVSGWQELET AFLEHKEQFH YFILINCGAN VDLLDILQPD EDTVFFVCDT 101 150 ENSBTAP00000005623/1-616 HRPVNVVNVY SDTQIRLLIK QDDDLEVPAY EDIFRDEEED EEHSGNEGDE ENSP00000405726/1-598 HRPVNVVNVY NDTQIKLLIK QDDDLEVPAY EDIFRDEEED EEHSGNDSD- BACU017103/1-659 HRPVNVVNVY NDAQIKLLIK QDDDLEVPAY DDIFRDEEED KEHSGNESDE bmy_02449T0/1-590 HRPVNVVNVY NDAQVKLLIK QDDDLEVPAY DDIFRDEEED KEHSGNESDE ENSTTRP00000014172/1-567 HRPVNVVNVY NDAQIKLLIK QDDDLEVPAY DDIFRDEEED KEHSGNESDE 151 200 ENSBTAP00000005623/1-616 GSEPSEKRTR LEE------- ---------- ---------- ---------- ENSP00000405726/1-598 GSEPSEKRTR LEE------- ---------- ---------- ---------- BACU017103/1-659 GSEPSEKRTR LEEWRALGGL HGAEMKDSGC GLSRCGEGGA ADHVHAPAVL bmy_02449T0/1-590 GSEPSEKRTR LEE------- ---------- ---------- ---------- ENSTTRP00000014172/1-567 GSEPSEKRAR VEE------- ---------- ---------- ---------- 201 250 ENSBTAP00000005623/1-616 -----EIAAQ TLKRRQ---- -----RRE-W EAR------- ---------- ENSP00000405726/1-598 -----EIVEQ TMRRRQ---- -----RRE-W EARSGSGSEP VAAALEKSSR BACU017103/1-659 MGQRAQLPPQ RLPPQEQALR PVLSARSEPS RAV------- ---------- bmy_02449T0/1-590 -----EIAER TLKRRK---- -----RRE-W EAR------- ---------- ENSTTRP00000014172/1-567 -----EIAEQ TLKRRK---- -----RRD-W EAR------- ---------- 251 300 ENSBTAP00000005623/1-616 ---------- -----RRDVL FDYEQYEYHG TSAAMVMFDL AWLMSKDLSD ENSP00000405726/1-598 LFAGPMSDRT APRSPRRDIL FDYEQYEYHG TSSAMVMFEL AWMLSKDLND BACU017103/1-659 ---------- -----GRDIL FDYEQYEYHG TSSAMVMFDL AWMMSKDLSD bmy_02449T0/1-590 ---------- -----RRDIL FDYEQYEYHG TSSAMVMFDL AWMMSKDLSD ENSTTRP00000014172/1-567 ---------- -----RRDIL FDYEQYEYHG TSSAMVMFDL AWMMSKDLSD 301 350 ENSBTAP00000005623/1-616 MLWWAIVGLT DQWVQDKITQ VKYVTDVGVL QRHVSRHSHR REDEAHALSV ENSP00000405726/1-598 MLWWAIVGLT DQWVQDKITQ MKYVTDVGVL QRHVSRHNHR NEDEENTLSV BACU017103/1-659 MLWWAIVGLT DQWVQDKITQ MKYVTDVGIL QRHVSRHNHR HEDEEHALSV bmy_02449T0/1-590 MLWWAIVGLT DQWVQDKITQ MKYVTDVGIL QRHVSRHNHR HEDEEHALSV ENSTTRP00000014172/1-567 MLWWAIVGLT DQWVQDKITQ MKYVTDVGIL QRHVSRHNHR HEDEEHALSV 351 400 ENSBTAP00000005623/1-616 DCARISFEYD ---------- ---------- ---------- ---------L ENSP00000405726/1-598 DCTRISFEYD ---------- ---------- ---------- ---------L BACU017103/1-659 DCMRISFEYE YPHGSALRTR DERLWAEGPV GAAGVLDVGP TWLVHGFATF bmy_02449T0/1-590 DCMRISFEYE ---------- ---------- ---------- -------PSL ENSTTRP00000014172/1-567 DCMRISFEYD ---------- ---------- ---------- ---------L 401 450 ENSBTAP00000005623/1-616 RLALYQ-HWS LHDSLCNTCY TAARLQLWSL HGQKRLQEFL ADVGLPLKQV ENSP00000405726/1-598 RLVLYQ-HWS LHDSLCNTSY TAARFKLWSV HGQKRLQEFL ADMGLPLKQV BACU017103/1-659 RNITYIKHWS LHDSLCNTCY TAARFKLWSL HGQKRLQEFL ADVGLPLKQV bmy_02449T0/1-590 RLALYQ-HWS LHDSLCNTCY TAARFKLWSL HGQKRLQEFL ADVGLPLKQV ENSTTRP00000014172/1-567 RLALYQ-HWS LHDSLCNTCY TAARFKLWSL HGQKRLQEFL ADVGLPLKQV 451 500 ENSBTAP00000005623/1-616 KQKFQSMDVS LKENLREMIE ESANKFGMKD MRVQTFSVHF GFKHKFLASD ENSP00000405726/1-598 KQKFQAMDIS LKENLREMIE ESANKFGMKD MRVQTFSIHF GFKHKFLASD BACU017103/1-659 KQKFQSMDVS LKENLREMIE ESANKFGMKD MRVQTFSIHF GFKHKFLASD bmy_02449T0/1-590 KQKFQSMDVS LKENLREMIE ESANKFGMKD MRVQTFSIHF GFKHKFLASD ENSTTRP00000014172/1-567 KQKFQSMDVS LKENLREMIE ESANKFGMKD MRIQTFSIHF GFKHKFLASD 501 550 ENSBTAP00000005623/1-616 VVFATMSLME SPEH-GSGTD SFTQALDSLS RGNLDKLYHG LELAKRQLRA ENSP00000405726/1-598 VVFATMSLME SPEKDGSGTD HFIQALDSLS RSNLDKLYHG LELAKKQLRA BACU017103/1-659 VVFATMSLME SPEKDGSGTD NFIQALDSLS RGNLDKLYRG LELAKQQLRA bmy_02449T0/1-590 VVFATMSLME SPEKDGSGTD NFIQALDSLS RGNLDKLYRG LELAKQQLRA ENSTTRP00000014172/1-567 VVFATMSLME SPEKDGSGTD NFIQALDSLS RGNLDKLYRG LELAKQQLRA 551 600 ENSBTAP00000005623/1-616 TQQTIASCLC TNLVVSQGPF LYCALMEGTP DVALFSKPAS LSLLSRHLLK ENSP00000405726/1-598 TQQTIASCLC TNLVISQGPF LYCSLMEGTP DVMLFSRPAS LSLLSKHLLK BACU017103/1-659 TQQTIASCLC TNLIISQGPF LYCSLMEGTP DVVLFSRPAA LSLLSKHLLK bmy_02449T0/1-590 TQQTIASCLC TNLIISQGPF LYCSLMEGTP DVVLFSRPAA LSLLSKHLLK ENSTTRP00000014172/1-567 TQQTIASCLC TNLIISQGPF LYCSLMEGTP DVMLFSRPAA LSLLSKHLLK 601 650 ENSBTAP00000005623/1-616 SFVCSTKNRR CKLLPLVMAA PLSAEQGTVT MVGIPPETDS SDRKNFFGRA ENSP00000405726/1-598 SFVCSTKNRR CKLLPLVMAA PLSMEHGTVT VVGIPPETDS SDRKNFFGRA BACU017103/1-659 SFVCSTKNRR CKLLPLVMAA PLSVDQGTVT MVGIPPETDS SDRKNFFGRA bmy_02449T0/1-590 SFVCSTKNRR CKLLPLVMAA PLSAEQGTVT MVGIPPETDS SDRKNFFGRA ENSTTRP00000014172/1-567 SFVCSTKNRR CKLLPLVMAA PLSAEQGTVT MVGIPPETDS SDRKNFFGRA 651 700 ENSBTAP00000005623/1-616 FEKAAEGTNS RALHNHFDLS ASWRRSPQQQ ---------- ---------- ENSP00000405726/1-598 FEKAAESTSS RMLHNHFDLS ---------- ---------- ---------- BACU017103/1-659 FEKAAEGTNS RTLHNHFDLS ---------- ---------- ---------- bmy_02449T0/1-590 FEKAAEGTNS RTLHNHFDLS ELASSCWAHS GCGSVVGGPL QQQPPTSCFV ENSTTRP00000014172/1-567 FEKAAEGTNS RTLHNHFDLS ---------- ---------- ---------- 701 750 ENSBTAP00000005623/1-616 ---------P PPPISDLRPE VVLAGWQDTP ASPGWGLQGG AAWLPHAQAV ENSP00000405726/1-598 ---------- ---------- ---------- ---------- ---------V BACU017103/1-659 ---------- ---------- ---------- ---------- ---------V bmy_02449T0/1-590 PETADRRCWP ACRTPRLPTQ GGLEGRELLG FPQGWAACRG CG-------V ENSTTRP00000014172/1-567 ---------- ---------- ---------- ---------- ---------V 751 800 ENSBTAP00000005623/1-616 IELKAEDRSK FLDALVTLLS ENSP00000405726/1-598 IELKAEDRSK FLDALISLLS BACU017103/1-659 IELKAEDRSK FLDALVSLLS bmy_02449T0/1-590 IELKAEDRSK FLDALVSLLS ENSTTRP00000014172/1-567 IELKAEDRSK FLDALVSLLS