KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:01 2014 Check: 00 .. Name: ENSTTRP00000008377/1-685 Len: 686 Check: 9648 Weight: 1.00 Name: ENSP00000321606/1-686 Len: 686 Check: 4552 Weight: 1.00 Name: bmy_08962T0/1-343 Len: 686 Check: 1687 Weight: 1.00 Name: BACU014369/1-509 Len: 686 Check: 3681 Weight: 1.00 Name: ENSBTAP00000005625/1-572 Len: 686 Check: 3202 Weight: 1.00 // 1 50 ENSTTRP00000008377/1-685 MADRRRAWNT EDDLPVYLAR PGSAAQTPRQ KYGGMFAAVE GAYENKTIDF ENSP00000321606/1-686 MADRRRAWNT EDDLPVYLAR PGSAAQTPRQ KYGGMFAAVE GAYENKTIDF bmy_08962T0/1-343 ---------- ---------- ---------- ---------- ---------- BACU014369/1-509 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005625/1-572 -----MSYQG KKSIP----- ---------- ---------- ---------- 51 100 ENSTTRP00000008377/1-685 DAYSVGRRGS ARTPRSAGRL DAVGLPGPGG SEDTASDVSD PSGSAVSSPG ENSP00000321606/1-686 DAYSVGRRGS ARTPRSAGRP DAVGLPGPGG SEDTASDVSE PSGSAVSSPG bmy_08962T0/1-343 ---------- ---------- ---------- ---------- ---------- BACU014369/1-509 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005625/1-572 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000008377/1-685 ERDERPTALR IRCPAPRALP LGRDNAQSDR LLIKGGRIIN DDQSFYADVY ENSP00000321606/1-686 ERDERPPTLR IRRPAPRDLP LGRDNGQSDR LLIKGGRIIN DDQSLYADVY bmy_08962T0/1-343 ---------- ---------- ---------- ---------- ---------- BACU014369/1-509 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000005625/1-572 ---------- ---------- ----HITSDR LLIKGGRIIN DDQSFYADVY 151 200 ENSTTRP00000008377/1-685 LEDGLIKQIG ENLIVPGGVK TIEANGRMVI PGGIDVNTYL QKPSQGMTAA ENSP00000321606/1-686 LEDGLIKQIG ENLIVPGGVK TIEANGRMVI PGGIDVNTYL QKPSQGMTAA bmy_08962T0/1-343 ---------- ---------- ---------- ---------- ---------- BACU014369/1-509 ---------- ---------- -------MVI PGGIDVNTYL QKPSQGMTAA ENSBTAP00000005625/1-572 LEDGLIKQIG ENLIVPGGVK TIEANGRMVI PGGIDVNTYL QKPSQGMTAA 201 250 ENSTTRP00000008377/1-685 DDFFQGTKAA LAGGTTMIID HVVPEPGSSL LTSFEKWHEA ADTKSCCDYS ENSP00000321606/1-686 DDFFQGTRAA LVGGTTMIID HVVPEPGSSL LTSFEKWHEA ADTKSCCDYS bmy_08962T0/1-343 ---------- ---------- ---------- ---------- -------MYL BACU014369/1-509 DDFFQGTKAA LAGGTTMIID HVVPEPGSSL LTSFEKWHEA ADTKSCCDYS ENSBTAP00000005625/1-572 DDFFQGTKAA LAGGTTMIID HVVPEPGSSL LTSFEKWHEA ADTKSCCDYS 251 300 ENSTTRP00000008377/1-685 LHVDITSWHD GVREELEVLV QDKXXXXXXX XXXXXXXXXX XXXXLYEAFT ENSP00000321606/1-686 LHVDITSWYD GVREELEVLV QDKGVNSFQV YMAYKDVYQM SDSQLYEAFT bmy_08962T0/1-343 LCL------- ---------- ---------- ---------- ---------- BACU014369/1-509 LHVDITSWYD GVREELEVLA QDKGVNSFQV YMAYKDLYQM SDSQLYEAFT ENSBTAP00000005625/1-572 LHVDITSWYD GVREELEVLV QDKGVNSFQV YMAYKDLYQM SDSQLYEAFT 301 350 ENSTTRP00000008377/1-685 FLKGLGAVIL VHAENGDLIA QEQKRILEMG ITGPEGHALS RPEELEAEAV ENSP00000321606/1-686 FLKGLGAVIL VHAENGDLIA QEQKRILEMG ITGPEGHALS RPEELEAEAV bmy_08962T0/1-343 ---------- ---------- ---------- ---------- ---QLEAEAV BACU014369/1-509 FLKGLGAVIL VHAENGDLIA QEQKRILEMG ITGPEGHALS RPEELEAEAV ENSBTAP00000005625/1-572 FLKGLGAVIL VHAENGDLIA QEQKRILEMG ITGPEGHALS RPEELEAEAV 351 400 ENSTTRP00000008377/1-685 FRAITIAGRI NCPVYITKVM S-SAADIITL ARKNGPVVFG EPIAASLGTD ENSP00000321606/1-686 FRAITIAGRI NCPVYITKVM SKSAADIIAL ARKKGPLVFG EPIAASLGTD bmy_08962T0/1-343 FRAITIAGRI NCPVYITKVM SKSAADIITL ARKKGPLVFG EPIAASLGTD BACU014369/1-509 FRAITIAGRI NCPVYITKVM SKSAADIITL ARKKGPLVFG EPIAASLGTD ENSBTAP00000005625/1-572 FRAITIAGRI NCPVYITKVM SKSAADIITL ARKKGPLVFG EPIAASLGTD 401 450 ENSTTRP00000008377/1-685 GTHYWSKNWA KAAAFVTSPP LSPDPTTPDY LTSLLACGDL QVTGSGHCPY ENSP00000321606/1-686 GTHYWSKNWA KAAAFVTSPP LSPDPTTPDY LTSLLACGDL QVTGSGHCPY bmy_08962T0/1-343 GTHYWSKNWA KAAAFVTSPP LSPDPTTPDY LTSLLACGDL QVTGSSHCPY BACU014369/1-509 GTHYWSKNWA KAAAFVTSPP LSPDPTTPDY LTSLLACGDL QVTGSGHCPY ENSBTAP00000005625/1-572 GTHYWSKNWA KAAAFVTSPP LSPDPTTPDY LTSLLACGDL QVTGSSHCPY 451 500 ENSTTRP00000008377/1-685 STAQKAVGKD NFTLIPEGVN GIEERMTVVW DKAVATGKMD ENQFVAVTST ENSP00000321606/1-686 STAQKAVGKD NFTLIPEGVN GIEERMTVVW DKAVATGKMD ENQFVAVTST bmy_08962T0/1-343 STAQKAVGKD NFTLIPEGVN GIEERMTVVW DKAVATGKMD ENQFVAVTST BACU014369/1-509 STAQKAVGKD NFTLIPEGVN GIEERMTVVW DKAVATGKMD ENQFVAVTST ENSBTAP00000005625/1-572 STAQKAVGKD NFTLIPEGVN GIEERMTVVW DKAVATGKMD ENQFVAVTST 501 550 ENSTTRP00000008377/1-685 NAAKIFNLYP RKGRIAVGSD ADVVIWDPDK VKTITAKSHK SAVEYNIFEG ENSP00000321606/1-686 NAAKIFNLYP RKGRIAVGSD ADVVIWDPDK LKTITAKSHK SAVEYNIFEG bmy_08962T0/1-343 NAAKIFNLYP RKGRIAVGSD ADVVIWDPDK VKTITAKSHK SAVEYNIFEG BACU014369/1-509 NAAKIFNLYP RKGRIAVGSD ADVVIWDPDK VKTITAKSHK SAVEYNIFEG ENSBTAP00000005625/1-572 NAAKIFNLYP RKGRIAVGSD ADVVIWDPDK VKTITAKSHK SAVEYNIFEG 551 600 ENSTTRP00000008377/1-685 MECHGSPLVV ISQGKIVFED GSINVNKGAG RFIPRKPFPE YLYQRVRIRN ENSP00000321606/1-686 MECHGSPLVV ISQGKIVFED GNINVNKGMG RFIPRKAFPE HLYQRVKIRN bmy_08962T0/1-343 MECHGSPLVV ISQGKIVFED GNVNVNKGVG RFIPRKPFPE YLYQR----- BACU014369/1-509 MECHGSPLVV ISQGKIVFED GNVNVNKGVG RFIPRKPFPE YLYQRVRIRN ENSBTAP00000005625/1-572 MECHGSPLVV ISQGKIVFED GNINVNKGMG RFIPRKPFPE YLYQRIRIRN 601 650 ENSTTRP00000008377/1-685 KVSGLQGVPR GMYDGPVYEV PATPKYATPA PSVKSSPSKH QPPPIRNLHQ ENSP00000321606/1-686 KVFGLQGVSR GMYDGPVYEV PATPKYATPA PSAKSSPSKH QPPPIRNLHQ bmy_08962T0/1-343 -VSGLQGVPR GMYDGPVYEV PATPKYATPA PSVKSSPSKH QPPPIRNLHQ BACU014369/1-509 KVSGLQGVPR GMYDGPVYEV PATPKYATPA PSVKSSPSKH QPPPIRNLHQ ENSBTAP00000005625/1-572 KVSGLQGVPR GMYDGPVYEV PATPKYATPA PSVKSSPSKH QPPPIRNLHQ 651 700 ENSTTRP00000008377/1-685 SNFSLSGAQI DDNNPRRTGH RIVAPPGGRS NITSLG ENSP00000321606/1-686 SNFSLSGAQI DDNNPRRTGH RIVAPPGGRS NITSLG bmy_08962T0/1-343 SNFSLSGAQI DDNNPRRTGH RIVAPPGGRS NITSLG BACU014369/1-509 SNFSLSGAQI DDNNPRRTGH RIVAPPGGRS NITSLG ENSBTAP00000005625/1-572 SNFSLSGAQI DDNNPRRTGH RIVAPPGGRS NITSLG