KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:02 2014 Check: 00 .. Name: bmy_04589T0/1-134 Len: 209 Check: 3683 Weight: 1.00 Name: ENSP00000362869/1-161 Len: 209 Check: 7830 Weight: 1.00 Name: ENSBTAP00000005632/1-172 Len: 209 Check: 8438 Weight: 1.00 Name: BACU007282/1-183 Len: 209 Check: 8780 Weight: 1.00 Name: ENSTTRP00000006701/1-162 Len: 209 Check: 1723 Weight: 1.00 // 1 50 bmy_04589T0/1-134 ---------- -------MAM KKPPLPLTFV LLGK------ ---------- ENSP00000362869/1-161 MEYTGSKYIG EYVDGRMEGK AKYILPTETI YVGEMKDGMF HGEGTLYFPS ENSBTAP00000005632/1-172 MEYTGSQYIG EFVDGRMEGD AEYILPTETK YIGEMKDGMF HGQGTLYFPN BACU007282/1-183 ---------- ------MEGE AEYILPTETK YVGEMKDGMF HGQGTLYFPS ENSTTRP00000006701/1-162 MEYTGSQYIG EFVDGRMEGE AEYILPTETK YVGEMKDGMF HGQGTLYFPG 51 100 bmy_04589T0/1-134 -------WA- -----GTYTF SDGLQYDAEN WHYCDSYDRR FYTEICYGLK ENSP00000362869/1-161 GSQYDAIWEN GLAIKGTYTF SDGLHYDEKN WHYCDGYDRR FYTEILNGLK ENSBTAP00000005632/1-172 GSRFDAVWEK GLVVKGTYTF SDGLQYDTEN WHYCDSYDRR FYTEICYGLK BACU007282/1-183 GSRYNAIWEK GLVVKGTYTF SDGLQYDAEN WHYCDSYDRR FYTEICYGLK ENSTTRP00000006701/1-162 GSRYDAIWEK GLVVKGTYTF SDGLQYDAEH WHYCDTYDRR FYTEICYGLK 101 150 bmy_04589T0/1-134 PA-------- ---------- ---------G ISQLTNMDPP RKIPPGCYDC ENSP00000362869/1-161 PA-------- ---------- ---------G MAQLTNMDPP RKIPKGYYDC ENSBTAP00000005632/1-172 PA-------- ---------- ---------G ISQLTNMDPP RKIPPGCYDC BACU007282/1-183 PAAAVIHRIS CSTDVEQHRW SVCSVHRVPG ISQLTNMDPP RKIPPGCYDC ENSTTRP00000006701/1-162 PA-------- ---------- ---------G ISQLTNMDPP RKIPPGCYDC 151 200 bmy_04589T0/1-134 GDGFYNPTTR ITESEHPKLV YVKAEIPPRK VSVPSSKNIL IIRNAVKIPA ENSP00000362869/1-161 GDGFYNPVTR VVKDYRNRFL --------RN ADDDEHE--W ITRTCRKG-- ENSBTAP00000005632/1-172 GDGFYNPNTR IVKDYNYRFL --------RN ADDDEHE--W IVRTCRKGWD BACU007282/1-183 GDGFYNPTTR IVKDYKNRFL --------RN ADDDEHE--W IIRTCRKGWD ENSTTRP00000006701/1-162 GDGFYNPTTR IVKDYKNRFL --------RN ADDDEHE--W IIRTCRKGW- 201 250 bmy_04589T0/1-134 NIIPFVV-- ENSP00000362869/1-161 --------- ENSBTAP00000005632/1-172 ETMGPEPKS BACU007282/1-183 ETMGPKPKP ENSTTRP00000006701/1-162 ---------