KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:04 2014 Check: 00 .. Name: ENSTTRP00000013062/1-321 Len: 345 Check: 7503 Weight: 1.00 Name: ENSBTAP00000005651/1-327 Len: 345 Check: 7296 Weight: 1.00 Name: bmy_07336T0/1-204 Len: 345 Check: 8151 Weight: 1.00 Name: BACU014089/1-204 Len: 345 Check: 8759 Weight: 1.00 Name: ENSP00000376322/1-343 Len: 345 Check: 9823 Weight: 1.00 // 1 50 ENSTTRP00000013062/1-321 ---------- ---------- -VPASSSSSS V-AAAAPGQC RGFLSAPVFA ENSBTAP00000005651/1-327 ---------A SGRSLTGAAA RLSPQSSSSS V-AAAAPGQC RGFLSAPVFA bmy_07336T0/1-204 ---------- ---------- ---------- ---------- ---------- BACU014089/1-204 ---------- ---------- ---------- ---------- ---------- ENSP00000376322/1-343 MSRAGSWDMD GLRADGGGAG GAPASSSSSS VAAAAASGQC RGFLSAPVFA 51 100 ENSTTRP00000013062/1-321 GTHSGRAAAA AAAAAAAAAA AAASGFAYPG TTERAGSASS SSSSAVVAAR ENSBTAP00000005651/1-327 GTHSGR--AA AAAAAAAAAA AAASGFAYPG TSERAGSASS SSSSAVVAAR bmy_07336T0/1-204 ---------- ---------- ---------- ---------- ---------- BACU014089/1-204 ---------- ---------- ---------- ---------- ---------- ENSP00000376322/1-343 GTHSGR--AA AAAAAAAAAA AAASGFAYPG TSERTGSSSS SSSSAVVAAR 101 150 ENSTTRP00000013062/1-321 PEASSAKECP A--PGAAAAA PPGAPALGYG YHFGNGYYSC RMSHGVGLQQ ENSBTAP00000005651/1-327 PEAPSAKECP A--PGAAAAA PPGAPALGYG YHFGNGYYSC RMSHGVGLQQ bmy_07336T0/1-204 ---------- ---------- ---------- ---------- -MSHGVGLQQ BACU014089/1-204 ---------- ---------- ---------- ---------- -MSHGVGLQQ ENSP00000376322/1-343 PEAPPAKECP APTPAAAAAA PPSAPALGYG YHFGNGYYSC RMSHGVGLQQ 151 200 ENSTTRP00000013062/1-321 NALKSSPHAS LGGFPVEKYM DVSGLASSSV PANEVPARAK EVSFYQGYTS ENSBTAP00000005651/1-327 NALKSSPHAS LGGFPVEKYM DVSGLASSSV PANEVPARAK EVSFYQGYTS bmy_07336T0/1-204 NALKSSPHAS LGGFPVEKYM DVSGLASSSV PANEVPARAK EVSFYQGYTS BACU014089/1-204 NALKSSPHAS LGGFPVEKYM DVSGLASSSV PANEVPARAK EVSFYQGYTS ENSP00000376322/1-343 NALKSSPHAS LGGFPVEKYM DVSGLASSSV PANEVPARAK EVSFYQGYTS 201 250 ENSTTRP00000013062/1-321 PYQHVPGYID MVSTFGSGEP RQEAYISMEG YQSWTLDNGW NSQVYCAKDQ ENSBTAP00000005651/1-327 PYQHVPGYID MVSTFGSGEP RHEAYISMEG YQSWTLANGW NSQVYCAKDQ bmy_07336T0/1-204 PYQHVPGYID MVSTFGSGEP RHEAYISMEG YQSWTLANGW NSQVYCAKDQ BACU014089/1-204 PYQHVPGYID MVSTFGSGEP RHEAYISMEG YQSWTLANGW NSQVYCAKDQ ENSP00000376322/1-343 PYQHVPGYID MVSTFGSGEP RHEAYISMEG YQSWTLANGW NSQVYCTKDQ 251 300 ENSTTRP00000013062/1-321 XXXXXXXXXX XXXDVALNQP DMCVYRRGRK KRVPYTKLQL KELENEYAIN ENSBTAP00000005651/1-327 PQGSHFWKSS FPGDVALNQP DMCVYRRGRK KRVPYTKLQL KELENEYAVN bmy_07336T0/1-204 PQGSHFWKSS FPGDVALNQP DMCVYRRGRK KRVPYTKLQL KELENEYAIN BACU014089/1-204 PQGSHFWKSS FPGDVALNQP DMCVYRRGRK KRVPYTKLQL KELENEYAIN ENSP00000376322/1-343 PQGSHFWKSS FPGDVALNQP DMCVYRRGRK KRVPYTKLQL KELENEYAIN 301 350 ENSTTRP00000013062/1-321 KFINKDKRRR ISAATNLSER QVTIWFQNRR VKDKKIVSKL KDTVS ENSBTAP00000005651/1-327 KFINKDKRRR ISAATNLSER QVTIWFQNRR VKDKKIVSKL K---- bmy_07336T0/1-204 KFINKDKRRR ISAATNLSER QVTIWFQNRR VKDKKIVSKL KDAVS BACU014089/1-204 KFINKDKRRR ISAATNLSER QVTIWFQNRR VKDKKIVSKL KDTVS ENSP00000376322/1-343 KFINKDKRRR ISAATNLSER QVTIWFQNRR VKDKKIVSKL KDTVS