KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:04 2014 Check: 00 .. Name: ENSP00000385586/1-270 Len: 323 Check: 9649 Weight: 1.00 Name: ENSBTAP00000005652/1-271 Len: 323 Check: 1685 Weight: 1.00 Name: ENSTTRP00000013063/1-278 Len: 323 Check: 3017 Weight: 1.00 Name: bmy_07335T0/1-320 Len: 323 Check: 5563 Weight: 1.00 Name: BACU014088/1-270 Len: 323 Check: 1381 Weight: 1.00 // 1 50 ENSP00000385586/1-270 --MCERSLYR AGYVGSLLNL QSPDSFYFSN LRPNGGQLAA LPPISYPRGA ENSBTAP00000005652/1-271 LEMCERSLYR AGYVGSLLNL QSPDSFYFSN LRPNGGQLAA LPPISYPRGA ENSTTRP00000013063/1-278 --MCERSLYR AGYVGSLLNL QSPDSFYFSN LRPNGGQLAA LPSISYPRGA bmy_07335T0/1-320 --MCERSLYR AGYVGSLLNL QSPDSFYFSN LRPNGGQLAA LPSISYPRGA BACU014088/1-270 --MCERSLYR AGYVGSLLNL QSPDSFYFSN LRPNGGQLAA LPSISYPRGA 51 100 ENSP00000385586/1-270 LPWAATPASC APAQPAGATA FGGFSQPYLA GSGPLGLQPP TAKDGPEEQA ENSBTAP00000005652/1-271 LPWATTPASC APAQPAGATA FGSFPQPYLA GSGPLGLQPL GAKDGSEEQA ENSTTRP00000013063/1-278 LPWATTPASC APAQPAGATT FGSFSQPYLA GSGPLGLQPL GAKDGSEEQA bmy_07335T0/1-320 LPWATTPASC APAQPAGATN FGSFSQPYLA GSGPLGLQPL GAKDGSEEQA BACU014088/1-270 LPWATTPASC APAQPASATN FGSFSQPYLA GSGPLGLQPL GAKDGSEEQA 101 150 ENSP00000385586/1-270 KFYAPEAAAG PEERGRTRPS FAPESSLAPA VAALKAAKYD YAGVGRATPG ENSBTAP00000005652/1-271 KYYTPDAAAE PEERGRARPP FIPESSLAPA AAALKAAKYD YTGMGRVAPG ENSTTRP00000013063/1-278 KFYTPDAAAG PEERGLARPP FIPESSLAPA AAALKAVKYD YAGVGRVAPG bmy_07335T0/1-320 KFYTPDAAAG PEERGRARPP FIPESSLAPA AAALKAAKYD YAGVGRVAPG BACU014088/1-270 KFYTPDAAAG PEERGRARPP FIPESSLAPA AAALKAAKYD YAGVGRVAPG 151 200 ENSP00000385586/1-270 STTLLQGAPC APGFKDDTKG PLNLNMTVQA AGVASCLRPS LPD------- ENSBTAP00000005652/1-271 SSTLLEGTPC SAGFKDDAKG PLNLNMTMQ- AGVASCLRPS LPD------- ENSTTRP00000013063/1-278 SSALLEGTTC SSGFKDETKG PLNLNMTVQA AGVASCLQPS LPDGKGWPHS bmy_07335T0/1-320 SSALLEGTPC SSGFKDETKG PLNLNMTVQA AGVASCLQPS LPDGKGWPRS BACU014088/1-270 SSALLEGTPC SSGFKDETKG PLNLNMTVQA AGVASCLQPS LPD------- 201 250 ENSP00000385586/1-270 ---------- ---------- ---------- ---------- ---GLP-WGA ENSBTAP00000005652/1-271 ---------- ---------- ---------- ---------- ---GLP-WGA ENSTTRP00000013063/1-278 A--------- ---------- ---------- ---------- ---SLPAVGG bmy_07335T0/1-320 ASDAPRAGVG GGVQGRVCRG REPPGAGRQP GAGRADWGWG CVAGLP-WGA BACU014088/1-270 ---------- ---------- ---------- ---------- ---GLP-WGA 251 300 ENSP00000385586/1-270 APGRARKKRK PYTKQQIAEL ENEFLVNEFI NRQKRKELSN RLNLSDQQVK ENSBTAP00000005652/1-271 APGRARKKRK PYTKQQIAEL ENEFLLNEFI NRQKRKELSN RLNLSDQQVK ENSTTRP00000013063/1-278 GPG-ERKKRK PYTKQQIAEL ENEFLLNEFI NRQKRKELSN RLNLSDQQVK bmy_07335T0/1-320 APGRARKKRK PYTKQQIAEL ENEFLLNEFI NRQKRKELSN RLNLSDQQVK BACU014088/1-270 APGRARKKRK PYTKQQIAEL ENEFLLNEFI NRQKRKELSN RLNLSDQQVK 301 350 ENSP00000385586/1-270 IWFQNRRMKK KRVVLREQAL ALY ENSBTAP00000005652/1-271 IWFQNRRMKK KRVVLREQAL ALY ENSTTRP00000013063/1-278 IWFQNRRMKK KRVVLREQAL ALY bmy_07335T0/1-320 IWFQNRRMKK KRVVLREQAL ALY BACU014088/1-270 IWFQNRRMKK KRVVLREQAL ALY