KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:09 2014 Check: 00 .. Name: ENSTTRP00000001730/1-709 Len: 722 Check: 6092 Weight: 1.00 Name: ENSBTAP00000005677/1-717 Len: 722 Check: 5881 Weight: 1.00 Name: ENSP00000294785/1-709 Len: 722 Check: 1596 Weight: 1.00 Name: bmy_06317T0/1-709 Len: 722 Check: 3003 Weight: 1.00 Name: BACU003874/1-709 Len: 722 Check: 3069 Weight: 1.00 // 1 50 ENSTTRP00000001730/1-709 MATDGGGYVA DLGSRSLLRL VSFCVLLAGL CEGNSVEKKI YIPLNKTAPC ENSBTAP00000005677/1-717 MATAGGGCVA DPGSRSLLRL LSFCVLLAGL CEGNSVERKI YIPLNKTAPC ENSP00000294785/1-709 MATAGGGSGA DPGSRGLLRL LSFCVLLAGL CRGNSVERKI YIPLNKTAPC bmy_06317T0/1-709 MATDGGGCVA DLGSRSLLRL VSFCVLLAGL CEGNSVEKKI YIPLNKTAPC BACU003874/1-709 MATDGGGCVA DLGSRSLLRL VSFCVLLAGL CEGNSVEKKI YIPLNKTAPC 51 100 ENSTTRP00000001730/1-709 VRLLNATHQI GCQSSVSGDT GVIHVVQKEE DLQWVLTDGP NPPYVVLLEG ENSBTAP00000005677/1-717 VRLLNATHQI GCQSSISGDT GVIHVVEKEE DLQWVLTDGP NPPYVVLLEG ENSP00000294785/1-709 VRLLNATHQI GCQSSISGDT GVIHVVEKEE DLQWVLTDGP NPPYMVLLES bmy_06317T0/1-709 VRLLNATHQI GCQSSVSGDT GVIHVVQKEE DLQWVLTDGP NPPYVVLLEG BACU003874/1-709 VRLLNATHQI GCQSSVSGDT GVIHVVQKEE DLQWVLTDGP NPPYVVLLEG 101 150 ENSTTRP00000001730/1-709 TLFTRNLMEK LKGRTSRIAG LAVSLAKPSP ASGFSPSVQC ANDGFGVYSN ENSBTAP00000005677/1-717 TLFTRDVMEK LKGRSGRIAG LAVSLAKPSP ASGFSPSVQC PNDGFGVYSN ENSP00000294785/1-709 KHFTRDLMEK LKGRTSRIAG LAVSLTKPSP ASGFSPSVQC PNDGFGVYSN bmy_06317T0/1-709 TLFTRNLMEK LKGRTSRIAG LAVSLAKPSP ASGFSPSVQC PNDGFGVYSN BACU003874/1-709 TLFTRNLMEK LKGRTSRIAG LAVSLAKPSP ATGFSPSVQC PNDGFGVYSN 151 200 ENSTTRP00000001730/1-709 SYGPEFAHCR EIAWNPLGDG LAYEDFSFPI FLLEDENETN VIKQCYRDHN ENSBTAP00000005677/1-717 SYGSQFAHCR AFQWNKVGDG LAYEDFSFPI FLLEDENETN VIKQCYRDHN ENSP00000294785/1-709 SYGPEFAHCR EIQWNSLGNG LAYEDFSFPI FLLEDENETK VIKQCYQDHN bmy_06317T0/1-709 SYGPEFAHCR EIAWNSLGDG LAYEDFSFPI FLLEDENETN VIKQCYHDHN BACU003874/1-709 SYGPEFAHCR EIAWNSLGDG LAYEDFSFPI FLLEDENETN VIKQCYRDHN 201 250 ENSTTRP00000001730/1-709 LSQNGSAPAF PLCAMQLFSH MHAVISTVTC MRRSFIQSSF SINPEIVCDP ENSBTAP00000005677/1-717 LSPNGSAPAF PLCAMQLFSH MHAVVSTVTC MRRSLIQSSF SISPEIVCDP ENSP00000294785/1-709 LSQNGSAPTF PLCAMQLFSH MHAVISTATC MRRSSIQSTF SINPEIVCDP bmy_06317T0/1-709 LSQNGSAPAF PLCAMQLFSH MHAVISTVTC MRRSFIQSSF SINPEIVCDP BACU003874/1-709 LSQNGSAPAF PLCAMQLFSH MHAVISTVTC MRRSFIQSSF SINPEIVCDP 251 300 ENSTTRP00000001730/1-709 LSDYNVWSML KPVNTSETLE PDDKVVVAAT RLDSRSFFWN VAPGAESAVA ENSBTAP00000005677/1-717 LSDYNVWSLL KPINTSGTLE PDDRVVVAAT RLDSRSFFWN VAPGAESAVA ENSP00000294785/1-709 LSDYNVWSML KPINTTGTLK PDDRVVVAAT RLDSRSFFWN VAPGAESAVA bmy_06317T0/1-709 LSDYNVWSML KPVNTSETLE PDDKVVVAAT RLDSRSFFWN VAPGAESAVA BACU003874/1-709 LSDYNVWSML KPVNTSETLE PDDKVVVAAT RLDSRSFFWN VAPGAESAVA 301 350 ENSTTRP00000001730/1-709 SFVTQLAAAE ALQKAPDVTT VPRNVMFVFF QEETFDYIGS SRMVYDMKNG ENSBTAP00000005677/1-717 SFITQLAAAE ALQKAPDAAT LPRNVMFVFF QGETFDYIGS SRMVYDMENG ENSP00000294785/1-709 SFVTQLAAAE ALQKAPDVTT LPRNVMFVFF QGETFDYIGS SRMVYDMEKG bmy_06317T0/1-709 SFVTQLAAAE ALQKAPDVTT LPRNVMFVFF QGETFDYIGS SRMVYDMENG BACU003874/1-709 SFVTQLAAAE ALQKAPDVTT LPRNVMFVFF QGETFDYIGS SRMVYDMENG 351 400 ENSTTRP00000001730/1-709 KFPVQLENID SFVELGQVAL RNSLELWMHT DPMSQKNETV QNQVEELLTT ENSBTAP00000005677/1-717 KFPVQLENID SFVELGQVAL RNSLELWMHT DPMSQKNETV LNQVEVLLST ENSP00000294785/1-709 KFPVQLENVD SFVELGQVAL RTSLELWMHT DPVSQKNESV RNQVEDLLAT bmy_06317T0/1-709 KFPVQLENID SFVELGQVAL RNSLELWMHT DPMSQKNETV QNQVEELLTT BACU003874/1-709 KFPVQLENID SFVELGQVAL RNSLELWMHT DPMSQKNETV QNQVEELLTT 401 450 ENSTTRP00000001730/1-709 LEKSGAGVPT VVLRRLNRSQ PLPPSSLQRF LRAQNISGVV LADHSAVFQN ENSBTAP00000005677/1-717 LEQSGAGVPT VVLRRLNQSQ PLPPSSLQRF LRARNVSGVV LADHSDSFHN ENSP00000294785/1-709 LEKSGAGVPA VILRRPNQSQ PLPPSSLQRF LRARNISGVV LADHSGAFHN bmy_06317T0/1-709 LEKSGAGVPT VVLRRLSRSQ PLPPSSLQRF LRARNISGVV LADHSAVFHN BACU003874/1-709 LEKSGAGVPT VVLRRLSRSQ PLPPSSLQRF LRARNISGVV LADHSAVFHN 451 500 ENSTTRP00000001730/1-709 HYYQSIYDTA ENINVTYPEG QSPEEDLNFV TDTAKALAGV ATVLGRALYQ ENSBTAP00000005677/1-717 LYYQSIYDTA ENINVTYPAG QSPEEDLNFV TDTAKALAGV ATVLARALYR ENSP00000294785/1-709 KYYQSIYDTA ENINVSYPEW LSPEEDLNFV TDTAKALADV ATVLGRALYE bmy_06317T0/1-709 HYYQSIYDTA ENINVTYPEG QSPEEDLNFV TDAAKALAGV ATVLGRALYQ BACU003874/1-709 HYYQSIYDTA ENINVTYPEG QSPEEDLNFV TDAAKALAGV ATVLGRALYQ 501 550 ENSTTRP00000001730/1-709 LAGGTNFSDT IQADPQTVTR LLYGFLVRAN NSWFQSILRP DLRSYLGDGP ENSBTAP00000005677/1-717 LAGGASFNDT IQADPHTVTR LLYGFLVRAN NSWFQSILRP DLRSYLGDGP ENSP00000294785/1-709 LAGGTNFSDT VQADPQTVTR LLYGFLIKAN NSWFQSILRQ DLRSYLGDGP bmy_06317T0/1-709 LAGGTNFSHT IQADPQTVTR LLYGFLVRAN NSWFQSILRP DLRSYLGDGP BACU003874/1-709 LAGGTNFSDT IQADPQTVTR LLYGFLVRAN NSWFQSILRP DLRSYLGDGP 551 600 ENSTTRP00000001730/1-709 LQHYIAVSSP TNTTYVVQYA LANLTGKVID LTREQCQDPS KVPTENKDXX ENSBTAP00000005677/1-717 LQHYIAVSSP TNATYVVQYA LANLTGKVID LTREQCQDPS QVPTENKDLY ENSP00000294785/1-709 LQHYIAVSSP TNTTYVVQYA LANLTGTVVN LTREQCQDPS KVPSENKDLY bmy_06317T0/1-709 LQHYIAVSSP TNTTYVVQYA LANLTGKVID LTREQCQDPS KVPTENKDLY BACU003874/1-709 LQHYIAVSSP TNTTYVVQYA LANLTGKVID LTREQCQDPS KVPTENKDLY 601 650 ENSTTRP00000001730/1-709 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000005677/1-717 EYTWVQGPLN ANETDRLPRC VRSTARLARA LSPAFELKQW GSTEYSTWTE ENSP00000294785/1-709 EYSWVQGPLH SNETDRLPRC VRSTARLARA LSPAFELSQW SSTEYSTWTE bmy_06317T0/1-709 EYTWVQGPLN SNETDRLPRC VRSTARLARA LSPAFELKQW GSTEYSTWTE BACU003874/1-709 EYTWVQGPLN SNETDRLPRC VRSTARLARA LSPAFELKQW GSTEYSTWTE 651 700 ENSTTRP00000001730/1-709 XXXXXXXXXX XXXXXXXXXF ITLMVGFGVL VFSLVVTY-- ----CINAKA ENSBTAP00000005677/1-717 SRWKDIRARI FLIASKELEA E-----FGSM AELLDVAGKG LNQLSVEANL ENSP00000294785/1-709 SRWKDIRARI FLIASKELEL ITLTVGFGIL IFSLIVTY-- ----CINAKA bmy_06317T0/1-709 SRWKDIRARI FLIASKELEF ITLMVGFGVL VFSLVVTY-- ----CINAKA BACU003874/1-709 SRWKDIRARI FLIASKELEF ITLMVGFGVL VFSLVVTY-- ----CINAKA 701 750 ENSTTRP00000001730/1-709 DVLFIAPR-E PGSVSY---- -- ENSBTAP00000005677/1-717 QEWRLKPAFS PHCWPRACLQ RA ENSP00000294785/1-709 DVLFIAPR-E PGAVSY---- -- bmy_06317T0/1-709 DVLFIAPR-E PGSVSY---- -- BACU003874/1-709 DVLFIAPR-E PGSVSY---- --