KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:09 2014 Check: 00 .. Name: bmy_04718T0/1-544 Len: 603 Check: 9124 Weight: 1.00 Name: ENSTTRP00000004201/1-535 Len: 603 Check: 6216 Weight: 1.00 Name: ENSP00000243052/1-536 Len: 603 Check: 2700 Weight: 1.00 Name: BACU008105/1-525 Len: 603 Check: 857 Weight: 1.00 Name: ENSBTAP00000005680/1-535 Len: 603 Check: 4879 Weight: 1.00 // 1 50 bmy_04718T0/1-544 ---------- ---------- ---------- ---------- -MVKQLENGE ENSTTRP00000004201/1-535 MELSPRSPPE ML-QSDCPSA LELKSAPSKK MWIXXXXXLR YMVKQLENGE ENSP00000243052/1-536 MELSPRSPPE MLEESDCPSP LELKSAPSKK MWIKLRSLLR YMVKQLENGE BACU008105/1-525 ---------- ML-QSDCPSD LELKSAPSKK MWIKLRSLLR YMVKQLENGE ENSBTAP00000005680/1-535 MELSPRSPPE ML-ESDCPSP LELKSAPSKK MWIKLRSLLR YMVKQLENGE 51 100 bmy_04718T0/1-544 VNIEELKKNL EYTASLLEAV YINETRQILD TEDELQELRS DAVPSEVRDW ENSTTRP00000004201/1-535 VNIEELKQNL EYTASLLEAV YINETRQILD TEDELQELRS DAVPSEVRDW ENSP00000243052/1-536 INIEELKKNL EYTASLLEAV YIDETRQILD TEDELQELRS DAVPSEVRDW BACU008105/1-525 VNIEELKKNL EYTASLLEAV YINETRQILD TEDELQELRS DAVPSEVRDW ENSBTAP00000005680/1-535 VNIEELKKNL EYTASLLEAV YIDETRQILD TEDELQELRS DAVPSEVRDW 101 150 bmy_04718T0/1-544 LASTFTQQAR AKGRRAEEKP KFRSIVHAVQ AGIFVERMFR RTYTSVGPTY ENSTTRP00000004201/1-535 LASTFTQQAR AKGRRAEEKP KFRSIVHAVQ AGIFVERMFR RTYTSVGPTY ENSP00000243052/1-536 LASTFTQQAR AKGRRAEEKP KFRSIVHAVQ AGIFVERMFR RTYTSVGPTY BACU008105/1-525 LASTFTQQAR AKGRRAEEKP KFRSIVHAVQ AGIFVERMFR RTYTSVGPTY ENSBTAP00000005680/1-535 LASTFTQQTR AKGRRAEEKP KFRSIVHAVQ AGIFVERMFR RTYTSVGPTY 151 200 bmy_04718T0/1-544 STAVLNCLKN LDLWCFDVFS LNRAADDHAL RTI------- --------IP ENSTTRP00000004201/1-535 STVVLNCLKN LDLWCFDVFS LNRASDDHAL RTIVFQLLTR HNLISRFKIP ENSP00000243052/1-536 STAVLNCLKN LDLWCFDVFS LNQAADDHAL RTIVFELLTR HNLISRFKIP BACU008105/1-525 STAVLNCLKN LDLWCFDVFS LNRAADDHAL RTIVFELLTR HNLISRFKIP ENSBTAP00000005680/1-535 STAVLNCLKN VDLWCFDVFS LNRAADDHAL RTIVFELLTR HNLISRFKIP 201 250 bmy_04718T0/1-544 TVFLMTFLDA LETGYGKYKN PYHNQIHAAD VTQTVHCFLL RTGMVHCLSE ENSTTRP00000004201/1-535 TVFLMTFLDA LETGYGKYKN PYHNQIHAAD VTQTVHCFLL RTGMVHCLSE ENSP00000243052/1-536 TVFLMSFLDA LETGYGKYKN PYHNQIHAAD VTQTVHCFLL RTGMVHCLSE BACU008105/1-525 TVFLMTFLDA LETGYGKYKN PYHNQIHAAD VTQTVHCFLL RTGMVHCLSE ENSBTAP00000005680/1-535 TVFLMTFLDA LETGYGKYKN PYHNQIHAAD VTQTVHCFLL RTGMVHCLSE 251 300 bmy_04718T0/1-544 IEVLAIIFAA AIHDYEHTGT TNSFHIQTKS ECAILYNDRS VLENHHISSV ENSTTRP00000004201/1-535 IEVLAIIFAA AIHDYEHTGT TNSFHIQTKS ECAILYNDRS VLENHHISSV ENSP00000243052/1-536 IELLAIIFAA AIHDYEHTGT TNSFHIQTKS ECAIVYNDRS VLENHHISSV BACU008105/1-525 IEVLAIIFAA AIHDYEHTGT TNSFHIQTKS ECAILYNDRS VLENHHVSSV ENSBTAP00000005680/1-535 IEVLAIIFAA AIHDYEHTGT TNSFHIQTKS ECAILYNDRS VLENHHISSV 301 350 bmy_04718T0/1-544 FRMMQDDEMN IFINLTKDEF VELRALVIEM VLATDMSCHF QQVKSMKTAL ENSTTRP00000004201/1-535 FRIMQDDEMN IFINLTKDEF VELRALVIEM VLATDMSCHF QQLKSMKTAL ENSP00000243052/1-536 FRLMQDDEMN IFINLTKDEF VELRALVIEM VLATDMSCHF QQVKTMKTAL BACU008105/1-525 FRMMQDDEMN IFINLTKDEF VELRALVIEM VLATDMSCHF QQVKSMKTAL ENSBTAP00000005680/1-535 FRMMQDDEMN IFINLTKDEF VELRALVIEM VLATDMSCHF QQVKSMKTAL 351 400 bmy_04718T0/1-544 QQLERIDKSK ALSLLLHTAD ISHPTKQWSV HSRWTKALME EFFRQGDKEA ENSTTRP00000004201/1-535 QQLERIDKPK ALSLLLHAAD ISHPTKQWSV HSRWTKALME EFFRQGDKEA ENSP00000243052/1-536 QQLERIDKPK ALSLLLHAAD ISHPTKQWLV HSRWTKALME EFFRQGDKEA BACU008105/1-525 QQLERIDKSK ALSLLLHTAD ISHPTKQWSV HSRWTKALME EFFRQGDKEA ENSBTAP00000005680/1-535 QQLERIDKSK ALSLLLHAAD ISHPTKQWSV HSRWTKALME EFFRQGDKEA 401 450 bmy_04718T0/1-544 ELGLPFSPLC DRTSTLVAQS QIGFIDFIVE PTFSVLTDVA EKSVQPMGDE ENSTTRP00000004201/1-535 ELGLPFSPLC DRTSTLVAQS QIGFIDFIVE PTFSVLTDVA EKSVQPMGEE ENSP00000243052/1-536 ELGLPFSPLC DRTSTLVAQS QIGFIDFIVE PTFSVLTDVA EKSVQPLADE BACU008105/1-525 ELGLPFSPLC DRTSTLVAQS QIGFIDFIVE PTFSVLTDVA EKSVQPTGDE ENSBTAP00000005680/1-535 ELGLPFSPLC DRTSTLVAQS QIGFIDFIVE PTFSVLTDVA EKSVQPTGDD 451 500 bmy_04718T0/1-544 DSKSKTQPSG ASLLWMWKWE TPTPTWSASA LPGPN--TFR RTSRNGRNRR ENSTTRP00000004201/1-535 DSKSKTQPS- ------FQWR QPSLDVEVGD -PNPDVVSFR S--------- ENSP00000243052/1-536 DSKSKNQPS- ------FQWR QPSLDVEVGD -PNPDVVSFR S--------- BACU008105/1-525 DSKSKTQPS- ------FQWR QPSLDVEVGD -PNPDVVSFR S--------- ENSBTAP00000005680/1-535 DSKSKNQPS- ------FQWR QPSLDVEVGD -PNPDVVSFR S--------- 501 550 bmy_04718T0/1-544 QAASPTRCPL TSCRPVRKRP QPPLPTMSTA RTGIWTSRGL AQVLTGSEVF ENSTTRP00000004201/1-535 ---------- TWIKYIQENK QK-------- ----WKERA- ASGVTNQMSI ENSP00000243052/1-536 ---------- TWVKRIQENK QK-------- ----WKERA- ASGITNQMSI BACU008105/1-525 ---------- TWTKYIQENK QK-------- ----WKERA- ASGVTNQMSI ENSBTAP00000005680/1-535 ---------- TWTKYIQENK QK-------- ----WKERA- ASGITNQMSI 551 600 bmy_04718T0/1-544 DVISTIHRDW LPHLLQGSMD VEEQTTHPKD KCQRLWDWGK GLSPSDTHWG ENSTTRP00000004201/1-535 DELSPCE--- ---------- -EEAPASPAE D--------- ----EHNQNG ENSP00000243052/1-536 DELSPCE--- ---------- -EEAPPSPAE D--------- ----EHNQNG BACU008105/1-525 DELSPCE--- ---------- -EEAPASPAD D--------- ----EHSQNG ENSBTAP00000005680/1-535 DELSPCE--- ---------- -EEAPASPAE D--------- ----EHNQNG 601 650 bmy_04718T0/1-544 AL- ENSTTRP00000004201/1-535 NLD ENSP00000243052/1-536 NLD BACU008105/1-525 NLD ENSBTAP00000005680/1-535 NLD